RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 SLC4A1APQ9BWU0 796 aaKnown RBP17.05■□□□□ 0.32
SNRNP48-201ENST00000342415 MTUS2Q5JR59 1369 aa17.04■□□□□ 0.32
SNRNP48-201ENST00000342415 BAZ1BQ9UIG0 1483 aaKnown RBP17.02■□□□□ 0.32
SNRNP48-201ENST00000342415 RAPGEF2Q9Y4G8 1499 aa17■□□□□ 0.31
SNRNP48-201ENST00000342415 CCDC136Q96JN2 1154 aa16.98■□□□□ 0.31
SNRNP48-201ENST00000342415 RBM19Q9Y4C8 960 aaKnown RBP16.98■□□□□ 0.31
SNRNP48-201ENST00000342415 ANP32AP39687 249 aaKnown RBP16.98■□□□□ 0.31
SNRNP48-201ENST00000342415 KIF27Q86VH2 1401 aa16.97■□□□□ 0.31
SNRNP48-201ENST00000342415 EIF4G2P78344 907 aaKnown RBP eCLIP16.97■□□□□ 0.31
SNRNP48-201ENST00000342415 KDM2AQ9Y2K7 1162 aa16.96■□□□□ 0.31
SNRNP48-201ENST00000342415 DHX57Q6P158 1386 aaKnown RBP16.96■□□□□ 0.31
SNRNP48-201ENST00000342415 RAB3GAP2Q9H2M9 1393 aa16.96■□□□□ 0.31
SNRNP48-201ENST00000342415 B4GALNT3Q6L9W6 998 aa16.95■□□□□ 0.3
SNRNP48-201ENST00000342415 TMC1Q8TDI8 760 aa16.93■□□□□ 0.3
SNRNP48-201ENST00000342415 FOXD1Q16676 465 aa16.89■□□□□ 0.29
SNRNP48-201ENST00000342415 TOP2AP11388 1531 aaKnown RBP16.88■□□□□ 0.29
SNRNP48-201ENST00000342415 SETD5Q9C0A6 1442 aa16.84■□□□□ 0.29
SNRNP48-201ENST00000342415 BCL11AQ9H165 835 aa16.84■□□□□ 0.29
SNRNP48-201ENST00000342415 ZBTB47Q9UFB7 747 aaPredicted RBP16.82■□□□□ 0.28
SNRNP48-201ENST00000342415 PPP1R15AO75807 674 aaPredicted RBP16.82■□□□□ 0.28
SNRNP48-201ENST00000342415 CUX2O14529 1486 aa16.82■□□□□ 0.28
SNRNP48-201ENST00000342415 CARMIL1Q5VZK9 1371 aa16.82■□□□□ 0.28
SNRNP48-201ENST00000342415 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.8■□□□□ 0.282e-6■□□□□ 11.2
SNRNP48-201ENST00000342415 HSPA5P11021 654 aaKnown RBP16.78■□□□□ 0.28
SNRNP48-201ENST00000342415 PPP4R2Q9NY27 417 aa16.75■□□□□ 0.27
SNRNP48-201ENST00000342415 CCER2I3L3R5 266 aa16.75■□□□□ 0.27
SNRNP48-201ENST00000342415 RGL3Q3MIN7 710 aa16.75■□□□□ 0.27
SNRNP48-201ENST00000342415 SMARCA2P51531 1590 aa16.73■□□□□ 0.27
SNRNP48-201ENST00000342415 SMARCA4P51532 1647 aa16.72■□□□□ 0.27
SNRNP48-201ENST00000342415 CANXP27824 592 aaKnown RBP16.71■□□□□ 0.27
SNRNP48-201ENST00000342415 EIF5BO60841 1220 aaKnown RBP16.68■□□□□ 0.26
SNRNP48-201ENST00000342415 RTN4Q9NQC3 1192 aaKnown RBP16.67■□□□□ 0.26
SNRNP48-201ENST00000342415 LAS1LQ9Y4W2 734 aaKnown RBP16.67■□□□□ 0.26
SNRNP48-201ENST00000342415 ARXQ96QS3 562 aa16.66■□□□□ 0.26
SNRNP48-201ENST00000342415 TIMELESSQ9UNS1 1208 aa16.66■□□□□ 0.26
SNRNP48-201ENST00000342415 FHOD3Q2V2M9 1422 aa16.64■□□□□ 0.25
SNRNP48-201ENST00000342415 FHAD1B1AJZ9 1412 aa16.64■□□□□ 0.25
SNRNP48-201ENST00000342415 TSPY4P0CV99 314 aa16.63■□□□□ 0.25
SNRNP48-201ENST00000342415 TSPY10P0CW01 314 aa16.63■□□□□ 0.25
SNRNP48-201ENST00000342415 CARD11Q9BXL7 1154 aa16.63■□□□□ 0.25
SNRNP48-201ENST00000342415 L3MBTL2Q969R5 705 aa16.63■□□□□ 0.25
SNRNP48-201ENST00000342415 KIF21BO75037 1637 aa16.62■□□□□ 0.25
SNRNP48-201ENST00000342415 ATAD2BQ9ULI0 1458 aa16.62■□□□□ 0.25
SNRNP48-201ENST00000342415 SENP3Q9H4L4 574 aaPredicted RBP16.62■□□□□ 0.25
SNRNP48-201ENST00000342415 CFDP1Q9UEE9 299 aaPredicted RBP16.61■□□□□ 0.25
SNRNP48-201ENST00000342415 NOP58Q9Y2X3 529 aaKnown RBP16.61■□□□□ 0.25
SNRNP48-201ENST00000342415 ARHGAP35Q9NRY4 1499 aa16.6■□□□□ 0.25
SNRNP48-201ENST00000342415 CHMP7Q8WUX9 453 aaPredicted RBP16.59■□□□□ 0.25
SNRNP48-201ENST00000342415 DEKP35659 375 aaKnown RBP16.59■□□□□ 0.25
SNRNP48-201ENST00000342415 TDRD9Q8NDG6 1382 aaKnown RBP16.58■□□□□ 0.24
SNRNP48-201ENST00000342415 MPHOSPH9Q99550 1183 aa16.58■□□□□ 0.24
SNRNP48-201ENST00000342415 CHGAP10645 457 aaKnown RBP16.56■□□□□ 0.24
SNRNP48-201ENST00000342415 CC2D1BQ5T0F9 858 aaKnown RBP16.55■□□□□ 0.24
SNRNP48-201ENST00000342415 ARAP1Q96P48 1450 aa16.55■□□□□ 0.24
SNRNP48-201ENST00000342415 PHLDB1Q86UU1 1377 aa16.54■□□□□ 0.24
SNRNP48-201ENST00000342415 SYNJ1O43426 1573 aa16.53■□□□□ 0.24
SNRNP48-201ENST00000342415 WDR43Q15061 677 aaKnown RBP eCLIP16.53■□□□□ 0.24
SNRNP48-201ENST00000342415 DCAF11Q8TEB1 546 aa16.52■□□□□ 0.24
SNRNP48-201ENST00000342415 NEFMP07197 916 aa16.5■□□□□ 0.23
SNRNP48-201ENST00000342415 RGS3P49796 1198 aa16.49■□□□□ 0.23
SNRNP48-201ENST00000342415 EIF4G1Q04637 1599 aaKnown RBP16.48■□□□□ 0.23
SNRNP48-201ENST00000342415 PKD2Q13563 968 aa16.48■□□□□ 0.23
SNRNP48-201ENST00000342415 IGF1RP08069 1367 aa16.47■□□□□ 0.23
SNRNP48-201ENST00000342415 PRKRIP1Q9H875 184 aaPredicted RBP16.46■□□□□ 0.23
SNRNP48-201ENST00000342415 PLEKHD1A6NEE1 506 aa16.45■□□□□ 0.22
SNRNP48-201ENST00000342415 NEUROD2Q15784 382 aa16.45■□□□□ 0.22
SNRNP48-201ENST00000342415 CCDC184Q52MB2 194 aa16.44■□□□□ 0.22
SNRNP48-201ENST00000342415 FMN1Q68DA7 1419 aa16.4■□□□□ 0.22
SNRNP48-201ENST00000342415 WASHC2AQ641Q2 1341 aa16.39■□□□□ 0.22
SNRNP48-201ENST00000342415 TNNT2P45379 298 aaPredicted RBP16.38■□□□□ 0.21
SNRNP48-201ENST00000342415 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.38■□□□□ 0.21
SNRNP48-201ENST00000342415 RRBP1Q9P2E9 1410 aaKnown RBP16.37■□□□□ 0.21
SNRNP48-201ENST00000342415 NUDCQ9Y266 331 aa16.36■□□□□ 0.21
SNRNP48-201ENST00000342415 CCDC18Q5T9S5 1454 aa16.36■□□□□ 0.21
SNRNP48-201ENST00000342415 CADPSQ9ULU8 1353 aa16.36■□□□□ 0.21
SNRNP48-201ENST00000342415 KNSTRNQ9Y448 316 aa16.36■□□□□ 0.21
SNRNP48-201ENST00000342415 RCAN3Q9UKA8 241 aa16.35■□□□□ 0.21
SNRNP48-201ENST00000342415 PLIN1O60240 522 aa16.35■□□□□ 0.21
SNRNP48-201ENST00000342415 WDR97A6NE52 1622 aa16.34■□□□□ 0.21
SNRNP48-201ENST00000342415 ZNF644Q9H582 1327 aaPredicted RBP16.34■□□□□ 0.21
SNRNP48-201ENST00000342415 UPF2Q9HAU5 1272 aaKnown RBP16.33■□□□□ 0.21
SNRNP48-201ENST00000342415 LRRC9Q6ZRR7 1453 aa16.33■□□□□ 0.2
SNRNP48-201ENST00000342415 FRAT1Q92837 279 aaPredicted RBP16.33■□□□□ 0.2
SNRNP48-201ENST00000342415 ST20-MTHFSA0A0A6YYL1 179 aa16.32■□□□□ 0.2
SNRNP48-201ENST00000342415 ERICH6BQ5W0A0 696 aa16.32■□□□□ 0.2
SNRNP48-201ENST00000342415 PRXQ9BXM0 1461 aa16.31■□□□□ 0.2
SNRNP48-201ENST00000342415 IPO9Q96P70 1041 aaKnown RBP16.31■□□□□ 0.2
SNRNP48-201ENST00000342415 PLPPR3Q6T4P5 718 aa16.3■□□□□ 0.2
SNRNP48-201ENST00000342415 HSP90AA1P07900 732 aaKnown RBP16.3■□□□□ 0.2
SNRNP48-201ENST00000342415 EXOC6Q8TAG9 804 aa16.3■□□□□ 0.2
SNRNP48-201ENST00000342415 SLC4A3P48751 1232 aa16.3■□□□□ 0.2
SNRNP48-201ENST00000342415 SLC24A1O60721 1099 aa16.3■□□□□ 0.2
SNRNP48-201ENST00000342415 RAD54L2Q9Y4B4 1467 aa16.3■□□□□ 0.2
SNRNP48-201ENST00000342415 MSH5O43196 834 aa16.29■□□□□ 0.2
SNRNP48-201ENST00000342415 NUP155O75694 1391 aa16.29■□□□□ 0.2
SNRNP48-201ENST00000342415 DDRGK1Q96HY6 314 aa16.28■□□□□ 0.2
SNRNP48-201ENST00000342415 ZBED9Q6R2W3 1325 aa16.28■□□□□ 0.2
SNRNP48-201ENST00000342415 FANCIQ9NVI1 1328 aa16.28■□□□□ 0.2
SNRNP48-201ENST00000342415 PPM1GO15355 546 aaPredicted RBP16.27■□□□□ 0.2
SNRNP48-201ENST00000342415 KIF7Q2M1P5 1343 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms