RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 ADAMTS12P58397 1594 aa23.04■■□□□ 1.28
TPM3-208ENST00000341485 CTTNBP2Q8WZ74 1663 aa23.02■■□□□ 1.28
TPM3-208ENST00000341485 VPS8Q8N3P4 1428 aa22.99■■□□□ 1.27
TPM3-208ENST00000341485 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.98■■□□□ 1.27
TPM3-208ENST00000341485 SNAPC4Q5SXM2 1469 aa22.98■■□□□ 1.27
TPM3-208ENST00000341485 ARAP1Q96P48 1450 aa22.96■■□□□ 1.27
TPM3-208ENST00000341485 ARHGAP35Q9NRY4 1499 aa22.96■■□□□ 1.27
TPM3-208ENST00000341485 MAGI1Q96QZ7 1491 aaPredicted RBP22.91■■□□□ 1.26
TPM3-208ENST00000341485 CCER1Q8TC90 406 aaPredicted RBP22.91■■□□□ 1.26
TPM3-208ENST00000341485 APLP2Q06481 763 aa22.85■■□□□ 1.25
TPM3-208ENST00000341485 EFCAB5A4FU69 1503 aa22.85■■□□□ 1.25
TPM3-208ENST00000341485 SYNJ2O15056 1496 aa22.83■■□□□ 1.25
TPM3-208ENST00000341485 GRIN2AQ12879 1464 aa22.83■■□□□ 1.25
TPM3-208ENST00000341485 CHMP7Q8WUX9 453 aaPredicted RBP22.82■■□□□ 1.24
TPM3-208ENST00000341485 P3H3Q8IVL6 736 aa22.81■■□□□ 1.24
TPM3-208ENST00000341485 IQGAP2Q13576 1575 aa22.79■■□□□ 1.24
TPM3-208ENST00000341485 FBLN2P98095 1184 aa22.78■■□□□ 1.24
TPM3-208ENST00000341485 FHOD3Q2V2M9 1422 aa22.76■■□□□ 1.23
TPM3-208ENST00000341485 SAMD9Q5K651 1589 aa22.74■■□□□ 1.23
TPM3-208ENST00000341485 KIAA0586Q9BVV6 1533 aa22.72■■□□□ 1.23
TPM3-208ENST00000341485 CEP170Q5SW79 1584 aa22.68■■□□□ 1.22
TPM3-208ENST00000341485 FMN1Q68DA7 1419 aa22.66■■□□□ 1.22
TPM3-208ENST00000341485 UGGT2Q9NYU1 1516 aa22.65■■□□□ 1.22
TPM3-208ENST00000341485 PCF11O94913 1555 aaKnown RBP22.65■■□□□ 1.22
TPM3-208ENST00000341485 NUP160Q12769 1436 aa22.64■■□□□ 1.21
TPM3-208ENST00000341485 ATP1B4Q9UN42 357 aaPredicted RBP22.61■■□□□ 1.21
TPM3-208ENST00000341485 HNRNPUL2Q1KMD3 747 aaKnown RBP22.61■■□□□ 1.21
TPM3-208ENST00000341485 CHD1O14646 1710 aa22.6■■□□□ 1.21
TPM3-208ENST00000341485 FYCO1Q9BQS8 1478 aa22.59■■□□□ 1.21
TPM3-208ENST00000341485 CASKIN1Q8WXD9 1431 aa22.59■■□□□ 1.21
TPM3-208ENST00000341485 TIAM1Q13009 1591 aa22.56■■□□□ 1.2
TPM3-208ENST00000341485 MAP3K1Q13233 1512 aa22.56■■□□□ 1.2
TPM3-208ENST00000341485 KANK4Q5T7N3 995 aaPredicted RBP22.56■■□□□ 1.2
TPM3-208ENST00000341485 KIAA0556O60303 1618 aa22.55■■□□□ 1.2
TPM3-208ENST00000341485 DISP1Q96F81 1524 aa22.53■■□□□ 1.2
TPM3-208ENST00000341485 CFAP43Q8NDM7 1665 aa22.52■■□□□ 1.2
TPM3-208ENST00000341485 JPH4Q96JJ6 628 aa22.5■■□□□ 1.19
TPM3-208ENST00000341485 CARMIL2Q6F5E8 1435 aa22.47■■□□□ 1.19
TPM3-208ENST00000341485 LRRC9Q6ZRR7 1453 aa22.45■■□□□ 1.18
TPM3-208ENST00000341485 HECW1Q76N89 1606 aa22.43■■□□□ 1.18
TPM3-208ENST00000341485 LRRIQ1Q96JM4 1722 aa22.4■■□□□ 1.18
TPM3-208ENST00000341485 CCDC18Q5T9S5 1454 aa22.38■■□□□ 1.17
TPM3-208ENST00000341485 RRBP1Q9P2E9 1410 aaKnown RBP22.38■■□□□ 1.17
TPM3-208ENST00000341485 PRG4Q92954 1404 aaPredicted RBP22.37■■□□□ 1.17
TPM3-208ENST00000341485 RAPGEF6Q8TEU7 1601 aa22.35■■□□□ 1.17
TPM3-208ENST00000341485 MTUS2Q5JR59 1369 aa22.34■■□□□ 1.17
TPM3-208ENST00000341485 SHROOM2Q13796 1616 aa22.33■■□□□ 1.16
TPM3-208ENST00000341485 DIEXFQ68CQ4 756 aaKnown RBP22.32■■□□□ 1.16
TPM3-208ENST00000341485 EPRSP07814 1512 aaKnown RBP22.32■■□□□ 1.16
TPM3-208ENST00000341485 CLASP1Q7Z460 1538 aa22.3■■□□□ 1.16
TPM3-208ENST00000341485 CDK13Q14004 1512 aaKnown RBP22.28■■□□□ 1.16
TPM3-208ENST00000341485 ARID3CA6NKF2 412 aa22.28■■□□□ 1.16
TPM3-208ENST00000341485 EHBP1L1Q8N3D4 1523 aa22.28■■□□□ 1.16
TPM3-208ENST00000341485 ZNF316A6NFI3 1004 aaPredicted RBP22.27■■□□□ 1.16
TPM3-208ENST00000341485 PLB1Q6P1J6 1458 aa22.27■■□□□ 1.15
TPM3-208ENST00000341485 CCNB3Q8WWL7 1395 aa22.26■■□□□ 1.15
TPM3-208ENST00000341485 NUP153P49790 1475 aaKnown RBP22.26■■□□□ 1.15
TPM3-208ENST00000341485 PHLDB1Q86UU1 1377 aa22.25■■□□□ 1.15
TPM3-208ENST00000341485 PTPRGP23470 1445 aa22.23■■□□□ 1.15
TPM3-208ENST00000341485 DHX57Q6P158 1386 aaKnown RBP22.23■■□□□ 1.15
TPM3-208ENST00000341485 SUPT6HQ7KZ85 1726 aaKnown RBP22.23■■□□□ 1.15
TPM3-208ENST00000341485 MAGI3Q5TCQ9 1506 aa22.21■■□□□ 1.15
TPM3-208ENST00000341485 ABCA8O94911 1581 aa22.2■■□□□ 1.15
TPM3-208ENST00000341485 CLSPNQ9HAW4 1339 aa22.18■■□□□ 1.14
TPM3-208ENST00000341485 NCOA2Q15596 1464 aa22.18■■□□□ 1.14
TPM3-208ENST00000341485 ERCC6L2Q5T890 1561 aa22.18■■□□□ 1.14
TPM3-208ENST00000341485 CDK11AQ9UQ88 783 aaPredicted RBP22.17■■□□□ 1.14
TPM3-208ENST00000341485 FAM50AQ14320 339 aaKnown RBP22.12■■□□□ 1.13
TPM3-208ENST00000341485 OSCARQ8IYS5 282 aa22.12■■□□□ 1.13
TPM3-208ENST00000341485 UACAQ9BZF9 1416 aa22.1■■□□□ 1.13
TPM3-208ENST00000341485 ARHGEF11O15085 1522 aa22.1■■□□□ 1.13
TPM3-208ENST00000341485 MYOM3Q5VTT5 1437 aa22.1■■□□□ 1.13
TPM3-208ENST00000341485 FGD6Q6ZV73 1430 aa22.1■■□□□ 1.13
TPM3-208ENST00000341485 ITGAEP38570 1179 aa22.09■■□□□ 1.13
TPM3-208ENST00000341485 ATP10BO94823 1461 aa22.06■■□□□ 1.12
TPM3-208ENST00000341485 TROQ12816 1431 aaPredicted RBP22.06■■□□□ 1.12
TPM3-208ENST00000341485 SCAF1Q9H7N4 1312 aaKnown RBP22.06■■□□□ 1.12
TPM3-208ENST00000341485 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.04■■□□□ 1.123e-7■■□□□ 11.8
TPM3-208ENST00000341485 PLEKHD1A6NEE1 506 aa22.03■■□□□ 1.12
TPM3-208ENST00000341485 ABCC2Q92887 1545 aa22.02■■□□□ 1.12
TPM3-208ENST00000341485 RAB3GAP2Q9H2M9 1393 aa22■■□□□ 1.11
TPM3-208ENST00000341485 PTPN23Q9H3S7 1636 aa21.99■■□□□ 1.11
TPM3-208ENST00000341485 ADCY10Q96PN6 1610 aa21.99■■□□□ 1.11
TPM3-208ENST00000341485 ACIN1Q9UKV3 1341 aaKnown RBP21.98■■□□□ 1.11
TPM3-208ENST00000341485 MIA2Q96PC5 1412 aa21.96■■□□□ 1.11
TPM3-208ENST00000341485 KIF14Q15058 1648 aa21.96■■□□□ 1.11
TPM3-208ENST00000341485 NEUROD1Q13562 356 aa21.95■■□□□ 1.11
TPM3-208ENST00000341485 SETD5Q9C0A6 1442 aa21.95■■□□□ 1.1
TPM3-208ENST00000341485 UHRF1BP1LA0JNW5 1464 aa21.95■■□□□ 1.1
TPM3-208ENST00000341485 TCOF1Q13428 1488 aaKnown RBP21.93■■□□□ 1.1
TPM3-208ENST00000341485 MAPKBP1O60336 1514 aa21.92■■□□□ 1.1
TPM3-208ENST00000341485 ITSN2Q9NZM3 1697 aa21.91■■□□□ 1.1
TPM3-208ENST00000341485 CENPBP07199 599 aaPredicted RBP21.89■■□□□ 1.09
TPM3-208ENST00000341485 MIER1Q8N108 512 aa21.89■■□□□ 1.09
TPM3-208ENST00000341485 ZCCHC11Q5TAX3 1644 aaKnown RBP21.88■■□□□ 1.09
TPM3-208ENST00000341485 KDM5BQ9UGL1 1544 aa21.86■■□□□ 1.09
TPM3-208ENST00000341485 GPATCH8Q9UKJ3 1502 aaKnown RBP21.86■■□□□ 1.09
TPM3-208ENST00000341485 CFDP1Q9UEE9 299 aaPredicted RBP21.85■■□□□ 1.09
TPM3-208ENST00000341485 ABCC10Q5T3U5 1492 aa21.85■■□□□ 1.09
TPM3-208ENST00000341485 CDC42BPAQ5VT25 1732 aa21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms