RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 GAPVD1Q14C86 1478 aa9.48□□□□□ -0.89
CSDE1-202ENST00000339438 MAP3K4Q9Y6R4 1608 aa9.48□□□□□ -0.89
CSDE1-202ENST00000339438 KIAA0556O60303 1618 aa9.45□□□□□ -0.9
CSDE1-202ENST00000339438 ABCA8O94911 1581 aa9.45□□□□□ -0.9
CSDE1-202ENST00000339438 SOGA1O94964 1423 aa9.45□□□□□ -0.9
CSDE1-202ENST00000339438 MAPKBP1O60336 1514 aa9.43□□□□□ -0.9
CSDE1-202ENST00000339438 SIGLEC1Q9BZZ2 1709 aa9.42□□□□□ -0.9
CSDE1-202ENST00000339438 IGF1RP08069 1367 aa9.41□□□□□ -0.9
CSDE1-202ENST00000339438 GLI2P10070 1586 aa9.41□□□□□ -0.9
CSDE1-202ENST00000339438 FHAD1B1AJZ9 1412 aa9.4□□□□□ -0.9
CSDE1-202ENST00000339438 UHRF1BP1LA0JNW5 1464 aa9.39□□□□□ -0.91
CSDE1-202ENST00000339438 PPARGC1BQ86YN6 1023 aaKnown RBP9.38□□□□□ -0.91
CSDE1-202ENST00000339438 DIP2BQ9P265 1576 aa9.38□□□□□ -0.91
CSDE1-202ENST00000339438 IQGAP2Q13576 1575 aa9.37□□□□□ -0.91
CSDE1-202ENST00000339438 ZCCHC11Q5TAX3 1644 aaKnown RBP9.37□□□□□ -0.91
CSDE1-202ENST00000339438 ABCC2Q92887 1545 aa9.37□□□□□ -0.91
CSDE1-202ENST00000339438 KIAA0586Q9BVV6 1533 aa9.33□□□□□ -0.92
CSDE1-202ENST00000339438 FRMPD1Q5SYB0 1578 aa9.32□□□□□ -0.92
CSDE1-202ENST00000339438 BCORL1Q5H9F3 1711 aa9.29□□□□□ -0.92
CSDE1-202ENST00000339438 ABCA9Q8IUA7 1624 aa9.29□□□□□ -0.92
CSDE1-202ENST00000339438 CFAP43Q8NDM7 1665 aa9.28□□□□□ -0.92
CSDE1-202ENST00000339438 RICTORQ6R327 1708 aa9.27□□□□□ -0.93
CSDE1-202ENST00000339438 SCAF1Q9H7N4 1312 aaKnown RBP9.27□□□□□ -0.93
CSDE1-202ENST00000339438 TDRD9Q8NDG6 1382 aaKnown RBP9.26□□□□□ -0.93
CSDE1-202ENST00000339438 CDC42BPBQ9Y5S2 1711 aa9.24□□□□□ -0.93
CSDE1-202ENST00000339438 RAPGEF6Q8TEU7 1601 aa9.22□□□□□ -0.93
CSDE1-202ENST00000339438 EFCAB5A4FU69 1503 aa9.22□□□□□ -0.93
CSDE1-202ENST00000339438 RAPGEF2Q9Y4G8 1499 aa9.21□□□□□ -0.93
CSDE1-202ENST00000339438 MAGI3Q5TCQ9 1506 aa9.21□□□□□ -0.93
CSDE1-202ENST00000339438 CDC42BPAQ5VT25 1732 aa9.21□□□□□ -0.93
CSDE1-202ENST00000339438 MYT1Q01538 1121 aa9.19□□□□□ -0.94
CSDE1-202ENST00000339438 KIF27Q86VH2 1401 aa9.18□□□□□ -0.94
CSDE1-202ENST00000339438 PCGF6Q9BYE7 350 aa9.18□□□□□ -0.94
CSDE1-202ENST00000339438 EEA1Q15075 1411 aa9.17□□□□□ -0.94
CSDE1-202ENST00000339438 ARAP3Q8WWN8 1544 aa9.16□□□□□ -0.94
CSDE1-202ENST00000339438 CROCC2H7BZ55 1655 aa9.15□□□□□ -0.94
CSDE1-202ENST00000339438 PREX2Q70Z35 1606 aa9.13□□□□□ -0.95
CSDE1-202ENST00000339438 ITSN2Q9NZM3 1697 aa9.13□□□□□ -0.95
CSDE1-202ENST00000339438 NUP153P49790 1475 aaKnown RBP9.13□□□□□ -0.95
CSDE1-202ENST00000339438 ARHGAP35Q9NRY4 1499 aa9.13□□□□□ -0.95
CSDE1-202ENST00000339438 TTC37Q6PGP7 1564 aa9.12□□□□□ -0.95
CSDE1-202ENST00000339438 ABCC10Q5T3U5 1492 aa9.12□□□□□ -0.95
CSDE1-202ENST00000339438 ZMYM4Q5VZL5 1548 aa9.12□□□□□ -0.95
CSDE1-202ENST00000339438 REREQ9P2R6 1566 aa9.12□□□□□ -0.95
CSDE1-202ENST00000339438 PCF11O94913 1555 aaKnown RBP9.11□□□□□ -0.95
CSDE1-202ENST00000339438 KDM5CP41229 1560 aa9.1□□□□□ -0.95
CSDE1-202ENST00000339438 ADGBQ8N7X0 1667 aa9.1□□□□□ -0.95
CSDE1-202ENST00000339438 KIF14Q15058 1648 aa9.09□□□□□ -0.95
CSDE1-202ENST00000339438 SUPT5HO00267 1087 aaKnown RBP9.08□□□□□ -0.96
CSDE1-202ENST00000339438 ADAMTSL3P82987 1691 aa9.07□□□□□ -0.96
CSDE1-202ENST00000339438 PLXNC1O60486 1568 aa9.07□□□□□ -0.96
CSDE1-202ENST00000339438 EPRSP07814 1512 aaKnown RBP9.07□□□□□ -0.96
CSDE1-202ENST00000339438 MAP3K1Q13233 1512 aa9.07□□□□□ -0.96
CSDE1-202ENST00000339438 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.07□□□□□ -0.96
CSDE1-202ENST00000339438 MYO5CQ9NQX4 1742 aa9.07□□□□□ -0.96
CSDE1-202ENST00000339438 CARMIL1Q5VZK9 1371 aa9.06□□□□□ -0.96
CSDE1-202ENST00000339438 PRG4Q92954 1404 aaPredicted RBP9.04□□□□□ -0.96
CSDE1-202ENST00000339438 INO80Q9ULG1 1556 aaPredicted RBP9.04□□□□□ -0.96
CSDE1-202ENST00000339438 DEPDC5O75140 1603 aa9.02□□□□□ -0.97
CSDE1-202ENST00000339438 KIDINS220Q9ULH0 1771 aa9.02□□□□□ -0.97
CSDE1-202ENST00000339438 ATP10BO94823 1461 aa9.02□□□□□ -0.97
CSDE1-202ENST00000339438 COL17A1Q9UMD9 1497 aaPredicted RBP9.01□□□□□ -0.97
CSDE1-202ENST00000339438 HECW1Q76N89 1606 aa9.01□□□□□ -0.97
CSDE1-202ENST00000339438 PLB1Q6P1J6 1458 aa9□□□□□ -0.97
CSDE1-202ENST00000339438 MROH1Q8NDA8 1641 aa9□□□□□ -0.97
CSDE1-202ENST00000339438 TIAM1Q13009 1591 aa9□□□□□ -0.97
CSDE1-202ENST00000339438 CHIC1Q5VXU3 224 aa8.99□□□□□ -0.97
CSDE1-202ENST00000339438 CFAP74Q9C0B2 1584 aa8.99□□□□□ -0.97
CSDE1-202ENST00000339438 MAST1Q9Y2H9 1570 aa8.99□□□□□ -0.97
CSDE1-202ENST00000339438 OSCARQ8IYS5 282 aa8.99□□□□□ -0.97
CSDE1-202ENST00000339438 SAMD9LQ8IVG5 1584 aa8.98□□□□□ -0.97
CSDE1-202ENST00000339438 MROH2AA6NES4 1674 aa8.98□□□□□ -0.97
CSDE1-202ENST00000339438 FER1L4A9Z1Z3 1794 aa8.96□□□□□ -0.97
CSDE1-202ENST00000339438 ABCA6Q8N139 1617 aa8.96□□□□□ -0.98
CSDE1-202ENST00000339438 UACAQ9BZF9 1416 aa8.95□□□□□ -0.98
CSDE1-202ENST00000339438 GOLGA3Q08378 1498 aa8.95□□□□□ -0.98
CSDE1-202ENST00000339438 FYCO1Q9BQS8 1478 aa8.95□□□□□ -0.98
CSDE1-202ENST00000339438 TNIKQ9UKE5 1360 aa8.94□□□□□ -0.98
CSDE1-202ENST00000339438 ABCC1P33527 1531 aa8.94□□□□□ -0.98
CSDE1-202ENST00000339438 WDR7Q9Y4E6 1490 aa8.94□□□□□ -0.98
CSDE1-202ENST00000339438 RNF17Q9BXT8 1623 aaKnown RBP8.94□□□□□ -0.98
CSDE1-202ENST00000339438 ARHGEF40Q8TER5 1519 aa8.94□□□□□ -0.98
CSDE1-202ENST00000339438 TSPOAP1O95153 1857 aa8.93□□□□□ -0.98
CSDE1-202ENST00000339438 ZNF142P52746 1687 aaPredicted RBP8.93□□□□□ -0.98
CSDE1-202ENST00000339438 ARHGEF12Q9NZN5 1544 aa8.93□□□□□ -0.98
CSDE1-202ENST00000339438 VWDEQ8N2E2 1590 aa8.92□□□□□ -0.98
CSDE1-202ENST00000339438 CASKIN1Q8WXD9 1431 aa8.91□□□□□ -0.98
CSDE1-202ENST00000339438 ARHGEF5Q12774 1597 aa8.9□□□□□ -0.98
CSDE1-202ENST00000339438 DIP2CQ9Y2E4 1556 aa8.9□□□□□ -0.99
CSDE1-202ENST00000339438 ACIN1Q9UKV3 1341 aaKnown RBP8.89□□□□□ -0.99
CSDE1-202ENST00000339438 ASXL2Q76L83 1435 aa8.89□□□□□ -0.99
CSDE1-202ENST00000339438 SUPT6HQ7KZ85 1726 aaKnown RBP8.89□□□□□ -0.99
CSDE1-202ENST00000339438 KDM5AP29375 1690 aaKnown RBP8.88□□□□□ -0.99
CSDE1-202ENST00000339438 CDK13Q14004 1512 aaKnown RBP8.88□□□□□ -0.99
CSDE1-202ENST00000339438 NEUROD1Q13562 356 aa8.88□□□□□ -0.99
CSDE1-202ENST00000339438 EIF2AK4Q9P2K8 1649 aaKnown RBP8.88□□□□□ -0.99
CSDE1-202ENST00000339438 TRIM26Q12899 539 aaPredicted RBP8.87□□□□□ -0.99
CSDE1-202ENST00000339438 STRCQ7RTU9 1775 aa8.85□□□□□ -0.99
CSDE1-202ENST00000339438 TCOF1Q13428 1488 aaKnown RBP8.85□□□□□ -0.99
CSDE1-202ENST00000339438 MAGI2Q86UL8 1455 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms