RNA–Protein interactions for RNA: ENST00000339255.2

NIPAL3-202, Transcript of NIPA like domain containing 3, humanhuman

TSL 5 BASIC

Gene NIPAL3, Length 1,676 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-202ENST00000339255 NUP160Q12769 1436 aa23.39■■□□□ 1.33
NIPAL3-202ENST00000339255 CEP170Q5SW79 1584 aa23.37■■□□□ 1.33
NIPAL3-202ENST00000339255 CEP162Q5TB80 1403 aa23.36■■□□□ 1.33
NIPAL3-202ENST00000339255 IQGAP2Q13576 1575 aa23.36■■□□□ 1.33
NIPAL3-202ENST00000339255 KIAA0586Q9BVV6 1533 aa23.35■■□□□ 1.33
NIPAL3-202ENST00000339255 CLIP1P30622 1438 aa23.29■■□□□ 1.32
NIPAL3-202ENST00000339255 EFCAB5A4FU69 1503 aa23.27■■□□□ 1.32
NIPAL3-202ENST00000339255 UGGT2Q9NYU1 1516 aa23.24■■□□□ 1.31
NIPAL3-202ENST00000339255 CLASP1Q7Z460 1538 aa23.21■■□□□ 1.31
NIPAL3-202ENST00000339255 SAMD9Q5K651 1589 aa23.21■■□□□ 1.31
NIPAL3-202ENST00000339255 ARHGAP35Q9NRY4 1499 aa23.18■■□□□ 1.3
NIPAL3-202ENST00000339255 SHROOM2Q13796 1616 aa23.17■■□□□ 1.3
NIPAL3-202ENST00000339255 RANGAP1P46060 587 aaPredicted RBP23.14■■□□□ 1.29
NIPAL3-202ENST00000339255 KIAA0556O60303 1618 aa23.11■■□□□ 1.29
NIPAL3-202ENST00000339255 OSCARQ8IYS5 282 aa23.11■■□□□ 1.29
NIPAL3-202ENST00000339255 ARAP1Q96P48 1450 aa23.1■■□□□ 1.29
NIPAL3-202ENST00000339255 JPH4Q96JJ6 628 aa23.09■■□□□ 1.29
NIPAL3-202ENST00000339255 CARMIL2Q6F5E8 1435 aa23.09■■□□□ 1.29
NIPAL3-202ENST00000339255 DISP1Q96F81 1524 aa23.08■■□□□ 1.29
NIPAL3-202ENST00000339255 VPS8Q8N3P4 1428 aa23.04■■□□□ 1.28
NIPAL3-202ENST00000339255 FHOD3Q2V2M9 1422 aa23.03■■□□□ 1.28
NIPAL3-202ENST00000339255 PRG4Q92954 1404 aaPredicted RBP23.03■■□□□ 1.28
NIPAL3-202ENST00000339255 FMN1Q68DA7 1419 aa23.01■■□□□ 1.27
NIPAL3-202ENST00000339255 P3H3Q8IVL6 736 aa22.96■■□□□ 1.27
NIPAL3-202ENST00000339255 FYCO1Q9BQS8 1478 aa22.91■■□□□ 1.26
NIPAL3-202ENST00000339255 PCF11O94913 1555 aaKnown RBP22.9■■□□□ 1.26
NIPAL3-202ENST00000339255 ERCC6L2Q5T890 1561 aa22.89■■□□□ 1.26
NIPAL3-202ENST00000339255 CASKIN1Q8WXD9 1431 aa22.88■■□□□ 1.25
NIPAL3-202ENST00000339255 HECW1Q76N89 1606 aa22.85■■□□□ 1.25
NIPAL3-202ENST00000339255 PTPRGP23470 1445 aa22.84■■□□□ 1.25
NIPAL3-202ENST00000339255 RAPGEF6Q8TEU7 1601 aa22.84■■□□□ 1.25
NIPAL3-202ENST00000339255 ABCA8O94911 1581 aa22.79■■□□□ 1.24
NIPAL3-202ENST00000339255 MAP3K1Q13233 1512 aa22.79■■□□□ 1.24
NIPAL3-202ENST00000339255 ARHGEF11O15085 1522 aa22.78■■□□□ 1.24
NIPAL3-202ENST00000339255 CFAP43Q8NDM7 1665 aa22.78■■□□□ 1.24
NIPAL3-202ENST00000339255 APLP2Q06481 763 aa22.77■■□□□ 1.24
NIPAL3-202ENST00000339255 CCDC18Q5T9S5 1454 aa22.77■■□□□ 1.24
NIPAL3-202ENST00000339255 PLB1Q6P1J6 1458 aa22.76■■□□□ 1.23
NIPAL3-202ENST00000339255 LRRIQ1Q96JM4 1722 aa22.75■■□□□ 1.23
NIPAL3-202ENST00000339255 TIAM1Q13009 1591 aa22.74■■□□□ 1.23
NIPAL3-202ENST00000339255 TTBK1Q5TCY1 1321 aaPredicted RBP22.73■■□□□ 1.23
NIPAL3-202ENST00000339255 NUP153P49790 1475 aaKnown RBP22.73■■□□□ 1.23
NIPAL3-202ENST00000339255 UACAQ9BZF9 1416 aa22.72■■□□□ 1.23
NIPAL3-202ENST00000339255 ABCC2Q92887 1545 aa22.71■■□□□ 1.23
NIPAL3-202ENST00000339255 RIMBP3CA6NJZ7 1639 aa22.71■■□□□ 1.23
NIPAL3-202ENST00000339255 RIMBP3BA6NNM3 1639 aa22.71■■□□□ 1.23
NIPAL3-202ENST00000339255 RIMBP3Q9UFD9 1639 aa22.71■■□□□ 1.23
NIPAL3-202ENST00000339255 EPRSP07814 1512 aaKnown RBP22.7■■□□□ 1.22
NIPAL3-202ENST00000339255 UHRF1BP1LA0JNW5 1464 aa22.69■■□□□ 1.22
NIPAL3-202ENST00000339255 ATP1B4Q9UN42 357 aaPredicted RBP22.68■■□□□ 1.22
NIPAL3-202ENST00000339255 CDK13Q14004 1512 aaKnown RBP22.62■■□□□ 1.21
NIPAL3-202ENST00000339255 ADCY10Q96PN6 1610 aa22.62■■□□□ 1.21
NIPAL3-202ENST00000339255 LRRC9Q6ZRR7 1453 aa22.6■■□□□ 1.21
NIPAL3-202ENST00000339255 EHBP1L1Q8N3D4 1523 aa22.58■■□□□ 1.21
NIPAL3-202ENST00000339255 KDM5BQ9UGL1 1544 aa22.58■■□□□ 1.21
NIPAL3-202ENST00000339255 ATP10BO94823 1461 aa22.57■■□□□ 1.2
NIPAL3-202ENST00000339255 CDK11AQ9UQ88 783 aaPredicted RBP22.55■■□□□ 1.2
NIPAL3-202ENST00000339255 ZCCHC11Q5TAX3 1644 aaKnown RBP22.55■■□□□ 1.2
NIPAL3-202ENST00000339255 MTUS2Q5JR59 1369 aa22.54■■□□□ 1.2
NIPAL3-202ENST00000339255 KANK4Q5T7N3 995 aaPredicted RBP22.52■■□□□ 1.2
NIPAL3-202ENST00000339255 SUPT6HQ7KZ85 1726 aaKnown RBP22.51■■□□□ 1.19
NIPAL3-202ENST00000339255 MAGI3Q5TCQ9 1506 aa22.5■■□□□ 1.19
NIPAL3-202ENST00000339255 ARID3CA6NKF2 412 aa22.5■■□□□ 1.19
NIPAL3-202ENST00000339255 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.5■■□□□ 1.19
NIPAL3-202ENST00000339255 HNRNPUL2Q1KMD3 747 aaKnown RBP22.5■■□□□ 1.19
NIPAL3-202ENST00000339255 TROQ12816 1431 aaPredicted RBP22.48■■□□□ 1.19
NIPAL3-202ENST00000339255 PPARGC1BQ86YN6 1023 aaKnown RBP22.46■■□□□ 1.19
NIPAL3-202ENST00000339255 CYB5RLQ6IPT4 315 aa22.45■■□□□ 1.18
NIPAL3-202ENST00000339255 PLEKHD1A6NEE1 506 aa22.44■■□□□ 1.18
NIPAL3-202ENST00000339255 KIF14Q15058 1648 aa22.43■■□□□ 1.18
NIPAL3-202ENST00000339255 NPM1P06748 294 aaKnown RBP eCLIP22.42■■□□□ 1.18
NIPAL3-202ENST00000339255 NCOA2Q15596 1464 aa22.4■■□□□ 1.18
NIPAL3-202ENST00000339255 WDR7Q9Y4E6 1490 aa22.38■■□□□ 1.17
NIPAL3-202ENST00000339255 MAPKBP1O60336 1514 aa22.36■■□□□ 1.17
NIPAL3-202ENST00000339255 DNAJC5Q9H3Z4 198 aa22.36■■□□□ 1.17
NIPAL3-202ENST00000339255 ASXL2Q76L83 1435 aa22.34■■□□□ 1.17
NIPAL3-202ENST00000339255 ITSN2Q9NZM3 1697 aa22.34■■□□□ 1.17
NIPAL3-202ENST00000339255 PHLDB1Q86UU1 1377 aa22.31■■□□□ 1.16
NIPAL3-202ENST00000339255 MYOM3Q5VTT5 1437 aa22.31■■□□□ 1.16
NIPAL3-202ENST00000339255 TRIM26Q12899 539 aaPredicted RBP22.3■■□□□ 1.16
NIPAL3-202ENST00000339255 ABCC10Q5T3U5 1492 aa22.29■■□□□ 1.16
NIPAL3-202ENST00000339255 RRBP1Q9P2E9 1410 aaKnown RBP22.28■■□□□ 1.16
NIPAL3-202ENST00000339255 CCNB3Q8WWL7 1395 aa22.27■■□□□ 1.16
NIPAL3-202ENST00000339255 CDC42BPAQ5VT25 1732 aa22.27■■□□□ 1.16
NIPAL3-202ENST00000339255 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.26■■□□□ 1.15
NIPAL3-202ENST00000339255 TTC37Q6PGP7 1564 aa22.26■■□□□ 1.15
NIPAL3-202ENST00000339255 MYO5CQ9NQX4 1742 aa22.26■■□□□ 1.15
NIPAL3-202ENST00000339255 FGD6Q6ZV73 1430 aa22.25■■□□□ 1.15
NIPAL3-202ENST00000339255 ABCA9Q8IUA7 1624 aa22.25■■□□□ 1.15
NIPAL3-202ENST00000339255 MIA2Q96PC5 1412 aa22.24■■□□□ 1.15
NIPAL3-202ENST00000339255 PREX2Q70Z35 1606 aa22.24■■□□□ 1.15
NIPAL3-202ENST00000339255 GPATCH8Q9UKJ3 1502 aaKnown RBP22.22■■□□□ 1.15
NIPAL3-202ENST00000339255 KCNH8Q96L42 1107 aa22.2■■□□□ 1.14
NIPAL3-202ENST00000339255 PTPN23Q9H3S7 1636 aa22.19■■□□□ 1.14
NIPAL3-202ENST00000339255 ARAP3Q8WWN8 1544 aa22.19■■□□□ 1.14
NIPAL3-202ENST00000339255 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.19■■□□□ 1.14
NIPAL3-202ENST00000339255 CDC42BPBQ9Y5S2 1711 aa22.18■■□□□ 1.14
NIPAL3-202ENST00000339255 GLI2P10070 1586 aa22.16■■□□□ 1.14
NIPAL3-202ENST00000339255 TCOF1Q13428 1488 aaKnown RBP22.15■■□□□ 1.14
NIPAL3-202ENST00000339255 DIP2BQ9P265 1576 aa22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms