RNA–Protein interactions for RNA: ENST00000334895.9

TPM1-204, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,637 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-204ENST00000334895 TNIKQ9UKE5 1360 aa34.92■■■■□ 3.18
TPM1-204ENST00000334895 CEP170Q5SW79 1584 aa34.89■■■■□ 3.18
TPM1-204ENST00000334895 CTTNBP2Q8WZ74 1663 aa34.88■■■■□ 3.17
TPM1-204ENST00000334895 NUP160Q12769 1436 aa34.87■■■■□ 3.17
TPM1-204ENST00000334895 CLASP1Q7Z460 1538 aa34.81■■■■□ 3.16
TPM1-204ENST00000334895 KIAA0586Q9BVV6 1533 aa34.75■■■■□ 3.15
TPM1-204ENST00000334895 IQGAP2Q13576 1575 aa34.72■■■■□ 3.15
TPM1-204ENST00000334895 CEP162Q5TB80 1403 aa34.68■■■■□ 3.14
TPM1-204ENST00000334895 RANGAP1P46060 587 aaPredicted RBP34.61■■■■□ 3.13
TPM1-204ENST00000334895 RIMBP3CA6NJZ7 1639 aa34.6■■■■□ 3.13
TPM1-204ENST00000334895 RIMBP3BA6NNM3 1639 aa34.6■■■■□ 3.13
TPM1-204ENST00000334895 RIMBP3Q9UFD9 1639 aa34.6■■■■□ 3.13
TPM1-204ENST00000334895 ARHGEF11O15085 1522 aa34.58■■■■□ 3.13
TPM1-204ENST00000334895 CLIP1P30622 1438 aa34.58■■■■□ 3.13
TPM1-204ENST00000334895 UGGT2Q9NYU1 1516 aa34.56■■■■□ 3.12
TPM1-204ENST00000334895 SHROOM2Q13796 1616 aa34.53■■■■□ 3.12
TPM1-204ENST00000334895 ARHGAP35Q9NRY4 1499 aa34.52■■■■□ 3.12
TPM1-204ENST00000334895 SAMD9Q5K651 1589 aa34.5■■■■□ 3.11
TPM1-204ENST00000334895 JPH4Q96JJ6 628 aa34.48■■■■□ 3.11
TPM1-204ENST00000334895 EFCAB5A4FU69 1503 aa34.47■■■■□ 3.11
TPM1-204ENST00000334895 DISP1Q96F81 1524 aa34.44■■■■□ 3.1
TPM1-204ENST00000334895 ERCC6L2Q5T890 1561 aa34.41■■■■□ 3.1
TPM1-204ENST00000334895 ARAP1Q96P48 1450 aa34.4■■■■□ 3.1
TPM1-204ENST00000334895 KIAA0556O60303 1618 aa34.39■■■■□ 3.1
TPM1-204ENST00000334895 PRG4Q92954 1404 aaPredicted RBP34.36■■■■□ 3.09
TPM1-204ENST00000334895 P3H3Q8IVL6 736 aa34.36■■■■□ 3.09
TPM1-204ENST00000334895 FHOD3Q2V2M9 1422 aa34.34■■■■□ 3.09
TPM1-204ENST00000334895 CARMIL2Q6F5E8 1435 aa34.29■■■■□ 3.08
TPM1-204ENST00000334895 CYB5RLQ6IPT4 315 aa34.19■■■■□ 3.06
TPM1-204ENST00000334895 VPS8Q8N3P4 1428 aa34.18■■■■□ 3.06
TPM1-204ENST00000334895 FMN1Q68DA7 1419 aa34.11■■■■□ 3.05
TPM1-204ENST00000334895 TTBK1Q5TCY1 1321 aaPredicted RBP34.07■■■■□ 3.05
TPM1-204ENST00000334895 PCF11O94913 1555 aaKnown RBP34.06■■■■□ 3.04
TPM1-204ENST00000334895 PTPRGP23470 1445 aa34.05■■■■□ 3.04
TPM1-204ENST00000334895 CASKIN1Q8WXD9 1431 aa34■■■■□ 3.03
TPM1-204ENST00000334895 PLB1Q6P1J6 1458 aa33.98■■■■□ 3.03
TPM1-204ENST00000334895 FYCO1Q9BQS8 1478 aa33.97■■■■□ 3.03
TPM1-204ENST00000334895 ABCA8O94911 1581 aa33.96■■■■□ 3.03
TPM1-204ENST00000334895 RAPGEF6Q8TEU7 1601 aa33.95■■■■□ 3.03
TPM1-204ENST00000334895 LRRIQ1Q96JM4 1722 aa33.89■■■■□ 3.02
TPM1-204ENST00000334895 HECW1Q76N89 1606 aa33.88■■■■□ 3.01
TPM1-204ENST00000334895 UACAQ9BZF9 1416 aa33.87■■■■□ 3.01
TPM1-204ENST00000334895 NUP153P49790 1475 aaKnown RBP33.86■■■■□ 3.01
TPM1-204ENST00000334895 ADCY10Q96PN6 1610 aa33.85■■■■□ 3.01
TPM1-204ENST00000334895 ATP1B4Q9UN42 357 aaPredicted RBP33.83■■■■□ 3.01
TPM1-204ENST00000334895 ABCC2Q92887 1545 aa33.81■■■■□ 3
TPM1-204ENST00000334895 EPRSP07814 1512 aaKnown RBP33.78■■■■□ 3
TPM1-204ENST00000334895 UHRF1BP1LA0JNW5 1464 aa33.78■■■■□ 3
TPM1-204ENST00000334895 CFAP43Q8NDM7 1665 aa33.76■■■□□ 2.99
TPM1-204ENST00000334895 TIAM1Q13009 1591 aa33.75■■■□□ 2.99
TPM1-204ENST00000334895 CDK13Q14004 1512 aaKnown RBP33.74■■■□□ 2.99
TPM1-204ENST00000334895 MAP3K1Q13233 1512 aa33.73■■■□□ 2.99
TPM1-204ENST00000334895 ARID3CA6NKF2 412 aa33.72■■■□□ 2.99
TPM1-204ENST00000334895 CCDC18Q5T9S5 1454 aa33.72■■■□□ 2.99
TPM1-204ENST00000334895 ATP10BO94823 1461 aa33.68■■■□□ 2.98
TPM1-204ENST00000334895 APLP2Q06481 763 aa33.68■■■□□ 2.98
TPM1-204ENST00000334895 KDM5BQ9UGL1 1544 aa33.64■■■□□ 2.98
TPM1-204ENST00000334895 KANK4Q5T7N3 995 aaPredicted RBP33.62■■■□□ 2.97
TPM1-204ENST00000334895 ZCCHC11Q5TAX3 1644 aaKnown RBP33.6■■■□□ 2.97
TPM1-204ENST00000334895 PPARGC1BQ86YN6 1023 aaKnown RBP33.6■■■□□ 2.97
TPM1-204ENST00000334895 MAGI3Q5TCQ9 1506 aa33.59■■■□□ 2.97
TPM1-204ENST00000334895 LRRC9Q6ZRR7 1453 aa33.58■■■□□ 2.97
TPM1-204ENST00000334895 NPM1P06748 294 aaKnown RBP eCLIP33.54■■■□□ 2.96
TPM1-204ENST00000334895 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.53■■■□□ 2.96
TPM1-204ENST00000334895 HNRNPUL2Q1KMD3 747 aaKnown RBP33.53■■■□□ 2.96
TPM1-204ENST00000334895 MAPKBP1O60336 1514 aa33.51■■■□□ 2.95
TPM1-204ENST00000334895 EHBP1L1Q8N3D4 1523 aa33.48■■■□□ 2.95
TPM1-204ENST00000334895 MTUS2Q5JR59 1369 aa33.47■■■□□ 2.95
TPM1-204ENST00000334895 CDK11AQ9UQ88 783 aaPredicted RBP33.43■■■□□ 2.94
TPM1-204ENST00000334895 TROQ12816 1431 aaPredicted RBP33.43■■■□□ 2.94
TPM1-204ENST00000334895 KIF13AQ9H1H9 1805 aa33.42■■■□□ 2.94
TPM1-204ENST00000334895 PLEKHD1A6NEE1 506 aa33.39■■■□□ 2.94
TPM1-204ENST00000334895 TRHP20396 242 aaPredicted RBP33.39■■■□□ 2.94
TPM1-204ENST00000334895 ASXL2Q76L83 1435 aa33.37■■■□□ 2.93
TPM1-204ENST00000334895 SUPT6HQ7KZ85 1726 aaKnown RBP33.35■■■□□ 2.93
TPM1-204ENST00000334895 KIF14Q15058 1648 aa33.34■■■□□ 2.93
TPM1-204ENST00000334895 DIP2BQ9P265 1576 aa33.33■■■□□ 2.93
TPM1-204ENST00000334895 WDR7Q9Y4E6 1490 aa33.32■■■□□ 2.92
TPM1-204ENST00000334895 NCOA2Q15596 1464 aa33.31■■■□□ 2.92
TPM1-204ENST00000334895 ABCC10Q5T3U5 1492 aa33.29■■■□□ 2.92
TPM1-204ENST00000334895 PHLDB1Q86UU1 1377 aa33.24■■■□□ 2.91
TPM1-204ENST00000334895 KCNH8Q96L42 1107 aa33.2■■■□□ 2.9
TPM1-204ENST00000334895 FAM69CQ0P6D2 419 aa33.19■■■□□ 2.9
TPM1-204ENST00000334895 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.19■■■□□ 2.9
TPM1-204ENST00000334895 TTC37Q6PGP7 1564 aa33.17■■■□□ 2.9
TPM1-204ENST00000334895 TSPOAP1O95153 1857 aa33.17■■■□□ 2.9
TPM1-204ENST00000334895 GLI2P10070 1586 aa33.14■■■□□ 2.9
TPM1-204ENST00000334895 MYOM3Q5VTT5 1437 aa33.11■■■□□ 2.89
TPM1-204ENST00000334895 CDC42BPAQ5VT25 1732 aa33.1■■■□□ 2.89
TPM1-204ENST00000334895 CCNB3Q8WWL7 1395 aa33.1■■■□□ 2.89
TPM1-204ENST00000334895 ABCA9Q8IUA7 1624 aa33.1■■■□□ 2.89
TPM1-204ENST00000334895 GPATCH8Q9UKJ3 1502 aaKnown RBP33.09■■■□□ 2.89
TPM1-204ENST00000334895 MAP3K4Q9Y6R4 1608 aa33.08■■■□□ 2.89
TPM1-204ENST00000334895 ITSN2Q9NZM3 1697 aa33.05■■■□□ 2.88
TPM1-204ENST00000334895 RRBP1Q9P2E9 1410 aaKnown RBP33.04■■■□□ 2.88
TPM1-204ENST00000334895 FGD6Q6ZV73 1430 aa33.04■■■□□ 2.88
TPM1-204ENST00000334895 PREX2Q70Z35 1606 aa33.03■■■□□ 2.88
TPM1-204ENST00000334895 PPRC1Q5VV67 1664 aaKnown RBP33.02■■■□□ 2.88
TPM1-204ENST00000334895 MYO5CQ9NQX4 1742 aa33.02■■■□□ 2.88
TPM1-204ENST00000334895 CDC42BPBQ9Y5S2 1711 aa33■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms