RNA–Protein interactions for RNA: ENST00000331450.9

LRRC28-202, Transcript of leucine rich repeat containing 28, humanhuman

TSL 1 (best) BASIC

Gene LRRC28, Length 752 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-202ENST00000331450 KIAA0586Q9BVV6 1533 aa26.6■■□□□ 1.85
LRRC28-202ENST00000331450 IQGAP2Q13576 1575 aa26.56■■□□□ 1.84
LRRC28-202ENST00000331450 DNAJC5Q9H3Z4 198 aa26.56■■□□□ 1.84
LRRC28-202ENST00000331450 GOLGA3Q08378 1498 aa26.51■■□□□ 1.83
LRRC28-202ENST00000331450 RIMBP3CA6NJZ7 1639 aa26.48■■□□□ 1.83
LRRC28-202ENST00000331450 RIMBP3BA6NNM3 1639 aa26.48■■□□□ 1.83
LRRC28-202ENST00000331450 RIMBP3Q9UFD9 1639 aa26.48■■□□□ 1.83
LRRC28-202ENST00000331450 ARHGEF11O15085 1522 aa26.48■■□□□ 1.83
LRRC28-202ENST00000331450 ERCC6L2Q5T890 1561 aa26.43■■□□□ 1.82
LRRC28-202ENST00000331450 UGGT2Q9NYU1 1516 aa26.42■■□□□ 1.82
LRRC28-202ENST00000331450 JPH4Q96JJ6 628 aa26.38■■□□□ 1.81
LRRC28-202ENST00000331450 PRG4Q92954 1404 aaPredicted RBP26.36■■□□□ 1.81
LRRC28-202ENST00000331450 KIAA0556O60303 1618 aa26.32■■□□□ 1.8
LRRC28-202ENST00000331450 DISP1Q96F81 1524 aa26.32■■□□□ 1.8
LRRC28-202ENST00000331450 SAMD9Q5K651 1589 aa26.3■■□□□ 1.8
LRRC28-202ENST00000331450 ARAP1Q96P48 1450 aa26.3■■□□□ 1.8
LRRC28-202ENST00000331450 EHMT2Q96KQ7 1210 aa26.27■■□□□ 1.8
LRRC28-202ENST00000331450 UBTFP17480 764 aaKnown RBP26.24■■□□□ 1.79
LRRC28-202ENST00000331450 CARMIL2Q6F5E8 1435 aa26.23■■□□□ 1.79
LRRC28-202ENST00000331450 EFCAB5A4FU69 1503 aa26.21■■□□□ 1.79
LRRC28-202ENST00000331450 TNIKQ9UKE5 1360 aa26.2■■□□□ 1.79
LRRC28-202ENST00000331450 ARHGAP35Q9NRY4 1499 aa26.1■■□□□ 1.77
LRRC28-202ENST00000331450 LOC105371045A0A1W2PR82 267 aa26.09■■□□□ 1.77
LRRC28-202ENST00000331450 PTPRGP23470 1445 aa26.05■■□□□ 1.76
LRRC28-202ENST00000331450 CYB5RLQ6IPT4 315 aa26.04■■□□□ 1.76
LRRC28-202ENST00000331450 ADCY10Q96PN6 1610 aa26.03■■□□□ 1.76
LRRC28-202ENST00000331450 FHOD3Q2V2M9 1422 aa26.03■■□□□ 1.76
LRRC28-202ENST00000331450 RANGAP1P46060 587 aaPredicted RBP26.02■■□□□ 1.76
LRRC28-202ENST00000331450 CLIP1P30622 1438 aa26.01■■□□□ 1.75
LRRC28-202ENST00000331450 ABCA8O94911 1581 aa26■■□□□ 1.75
LRRC28-202ENST00000331450 CEP162Q5TB80 1403 aa26■■□□□ 1.75
LRRC28-202ENST00000331450 P3H3Q8IVL6 736 aa25.98■■□□□ 1.75
LRRC28-202ENST00000331450 ABCC2Q92887 1545 aa25.97■■□□□ 1.75
LRRC28-202ENST00000331450 UHRF1BP1LA0JNW5 1464 aa25.96■■□□□ 1.75
LRRC28-202ENST00000331450 PLB1Q6P1J6 1458 aa25.94■■□□□ 1.74
LRRC28-202ENST00000331450 RAPGEF6Q8TEU7 1601 aa25.94■■□□□ 1.74
LRRC28-202ENST00000331450 UACAQ9BZF9 1416 aa25.94■■□□□ 1.74
LRRC28-202ENST00000331450 TTBK1Q5TCY1 1321 aaPredicted RBP25.9■■□□□ 1.74
LRRC28-202ENST00000331450 FMN1Q68DA7 1419 aa25.88■■□□□ 1.73
LRRC28-202ENST00000331450 ZCCHC11Q5TAX3 1644 aaKnown RBP25.85■■□□□ 1.73
LRRC28-202ENST00000331450 KDM5BQ9UGL1 1544 aa25.83■■□□□ 1.73
LRRC28-202ENST00000331450 PCF11O94913 1555 aaKnown RBP25.83■■□□□ 1.73
LRRC28-202ENST00000331450 HECW1Q76N89 1606 aa25.81■■□□□ 1.72
LRRC28-202ENST00000331450 LRRIQ1Q96JM4 1722 aa25.8■■□□□ 1.72
LRRC28-202ENST00000331450 NUP153P49790 1475 aaKnown RBP25.8■■□□□ 1.72
LRRC28-202ENST00000331450 MAPKBP1O60336 1514 aa25.78■■□□□ 1.72
LRRC28-202ENST00000331450 FYCO1Q9BQS8 1478 aa25.74■■□□□ 1.71
LRRC28-202ENST00000331450 CASKIN1Q8WXD9 1431 aa25.73■■□□□ 1.71
LRRC28-202ENST00000331450 ATP10BO94823 1461 aa25.71■■□□□ 1.71
LRRC28-202ENST00000331450 VPS8Q8N3P4 1428 aa25.68■■□□□ 1.7
LRRC28-202ENST00000331450 EPRSP07814 1512 aaKnown RBP25.67■■□□□ 1.7
LRRC28-202ENST00000331450 CDK13Q14004 1512 aaKnown RBP25.66■■□□□ 1.7
LRRC28-202ENST00000331450 NPM1P06748 294 aaKnown RBP eCLIP25.65■■□□□ 1.7
LRRC28-202ENST00000331450 KIF13AQ9H1H9 1805 aa25.63■■□□□ 1.69
LRRC28-202ENST00000331450 ASXL2Q76L83 1435 aa25.63■■□□□ 1.69
LRRC28-202ENST00000331450 CCDC18Q5T9S5 1454 aa25.61■■□□□ 1.69
LRRC28-202ENST00000331450 DIP2BQ9P265 1576 aa25.61■■□□□ 1.69
LRRC28-202ENST00000331450 CFAP43Q8NDM7 1665 aa25.59■■□□□ 1.69
LRRC28-202ENST00000331450 WDR7Q9Y4E6 1490 aa25.59■■□□□ 1.69
LRRC28-202ENST00000331450 ARID3CA6NKF2 412 aa25.57■■□□□ 1.68
LRRC28-202ENST00000331450 ABCC10Q5T3U5 1492 aa25.55■■□□□ 1.68
LRRC28-202ENST00000331450 GLI2P10070 1586 aa25.52■■□□□ 1.68
LRRC28-202ENST00000331450 ATP1B4Q9UN42 357 aaPredicted RBP25.51■■□□□ 1.67
LRRC28-202ENST00000331450 TIAM1Q13009 1591 aa25.5■■□□□ 1.67
LRRC28-202ENST00000331450 MAGI3Q5TCQ9 1506 aa25.5■■□□□ 1.67
LRRC28-202ENST00000331450 MAP3K1Q13233 1512 aa25.47■■□□□ 1.67
LRRC28-202ENST00000331450 MAP3K4Q9Y6R4 1608 aa25.46■■□□□ 1.67
LRRC28-202ENST00000331450 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.45■■□□□ 1.66
LRRC28-202ENST00000331450 HNRNPUL2Q1KMD3 747 aaKnown RBP25.45■■□□□ 1.66
LRRC28-202ENST00000331450 ABCA9Q8IUA7 1624 aa25.45■■□□□ 1.66
LRRC28-202ENST00000331450 TROQ12816 1431 aaPredicted RBP25.43■■□□□ 1.66
LRRC28-202ENST00000331450 KIF14Q15058 1648 aa25.42■■□□□ 1.66
LRRC28-202ENST00000331450 PLEKHD1A6NEE1 506 aa25.4■■□□□ 1.66
LRRC28-202ENST00000331450 EHBP1L1Q8N3D4 1523 aa25.39■■□□□ 1.66
LRRC28-202ENST00000331450 PPRC1Q5VV67 1664 aaKnown RBP25.39■■□□□ 1.65
LRRC28-202ENST00000331450 CDK11AQ9UQ88 783 aaPredicted RBP25.38■■□□□ 1.65
LRRC28-202ENST00000331450 TTC37Q6PGP7 1564 aa25.38■■□□□ 1.65
LRRC28-202ENST00000331450 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.37■■□□□ 1.65
LRRC28-202ENST00000331450 TRHP20396 242 aaPredicted RBP25.35■■□□□ 1.65
LRRC28-202ENST00000331450 FAM69CQ0P6D2 419 aa25.35■■□□□ 1.65
LRRC28-202ENST00000331450 TSPOAP1O95153 1857 aa25.34■■□□□ 1.65
LRRC28-202ENST00000331450 KCNH8Q96L42 1107 aa25.32■■□□□ 1.64
LRRC28-202ENST00000331450 LRRC9Q6ZRR7 1453 aa25.32■■□□□ 1.64
LRRC28-202ENST00000331450 MYO5CQ9NQX4 1742 aa25.32■■□□□ 1.64
LRRC28-202ENST00000331450 MTUS2Q5JR59 1369 aa25.3■■□□□ 1.64
LRRC28-202ENST00000331450 SUPT6HQ7KZ85 1726 aaKnown RBP25.29■■□□□ 1.64
LRRC28-202ENST00000331450 CDC42BPAQ5VT25 1732 aa25.27■■□□□ 1.64
LRRC28-202ENST00000331450 CD109Q6YHK3 1445 aa25.25■■□□□ 1.63
LRRC28-202ENST00000331450 PREX2Q70Z35 1606 aa25.25■■□□□ 1.63
LRRC28-202ENST00000331450 CDC42BPBQ9Y5S2 1711 aa25.23■■□□□ 1.63
LRRC28-202ENST00000331450 ARAP3Q8WWN8 1544 aa25.22■■□□□ 1.63
LRRC28-202ENST00000331450 ITSN2Q9NZM3 1697 aa25.2■■□□□ 1.63
LRRC28-202ENST00000331450 KANK4Q5T7N3 995 aaPredicted RBP25.2■■□□□ 1.62
LRRC28-202ENST00000331450 APLP2Q06481 763 aa25.19■■□□□ 1.62
LRRC28-202ENST00000331450 NCOA2Q15596 1464 aa25.19■■□□□ 1.62
LRRC28-202ENST00000331450 TEX14Q8IWB6 1497 aa25.19■■□□□ 1.62
LRRC28-202ENST00000331450 CFAP74Q9C0B2 1584 aa25.18■■□□□ 1.62
LRRC28-202ENST00000331450 PLCH2O75038 1416 aa25.16■■□□□ 1.62
LRRC28-202ENST00000331450 GPATCH8Q9UKJ3 1502 aaKnown RBP25.13■■□□□ 1.61
LRRC28-202ENST00000331450 NEO1Q92859 1461 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms