RNA–Protein interactions for RNA: ENST00000328111.6

DNMT3B-202, Transcript of DNA methyltransferase 3 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DNMT3B, Length 4,336 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3B-202ENST00000328111 RAPGEF2Q9Y4G8 1499 aa18.89■□□□□ 0.61
DNMT3B-202ENST00000328111 EIF4G2P78344 907 aaKnown RBP eCLIP18.88■□□□□ 0.61
DNMT3B-202ENST00000328111 TSPY4P0CV99 314 aa18.87■□□□□ 0.61
DNMT3B-202ENST00000328111 TSPY10P0CW01 314 aa18.87■□□□□ 0.61
DNMT3B-202ENST00000328111 KDM2AQ9Y2K7 1162 aa18.87■□□□□ 0.61
DNMT3B-202ENST00000328111 MRS2Q9HD23 443 aa18.86■□□□□ 0.61
DNMT3B-202ENST00000328111 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.86■□□□□ 0.61
DNMT3B-202ENST00000328111 FHAD1B1AJZ9 1412 aa18.84■□□□□ 0.61
DNMT3B-202ENST00000328111 SALL2Q9Y467 1007 aaPredicted RBP18.82■□□□□ 0.6
DNMT3B-202ENST00000328111 IRX6P78412 446 aaPredicted RBP18.82■□□□□ 0.6
DNMT3B-202ENST00000328111 RTL5Q5HYW3 569 aaPredicted RBP18.81■□□□□ 0.6
DNMT3B-202ENST00000328111 TMC1Q8TDI8 760 aa18.78■□□□□ 0.6
DNMT3B-202ENST00000328111 CFDP1Q9UEE9 299 aaPredicted RBP18.76■□□□□ 0.59
DNMT3B-202ENST00000328111 PLEKHD1A6NEE1 506 aa18.74■□□□□ 0.59
DNMT3B-202ENST00000328111 SETD5Q9C0A6 1442 aa18.73■□□□□ 0.59
DNMT3B-202ENST00000328111 RAB3GAP2Q9H2M9 1393 aa18.73■□□□□ 0.59
DNMT3B-202ENST00000328111 TDRD9Q8NDG6 1382 aaKnown RBP18.73■□□□□ 0.59
DNMT3B-202ENST00000328111 CADPSQ9ULU8 1353 aa18.7■□□□□ 0.58
DNMT3B-202ENST00000328111 SENP3-EIF4A1A0A087X0R7 540 aa18.7■□□□□ 0.58
DNMT3B-202ENST00000328111 CHGAP10645 457 aaKnown RBP18.69■□□□□ 0.58
DNMT3B-202ENST00000328111 KCNH8Q96L42 1107 aa18.67■□□□□ 0.58
DNMT3B-202ENST00000328111 RGL3Q3MIN7 710 aa18.66■□□□□ 0.58
DNMT3B-202ENST00000328111 TIMELESSQ9UNS1 1208 aa18.65■□□□□ 0.58
DNMT3B-202ENST00000328111 SUPT16HQ9Y5B9 1047 aaKnown RBP18.64■□□□□ 0.57
DNMT3B-202ENST00000328111 EIF4G1Q04637 1599 aaKnown RBP18.64■□□□□ 0.57
DNMT3B-202ENST00000328111 ARHGAP35Q9NRY4 1499 aa18.63■□□□□ 0.57
DNMT3B-202ENST00000328111 CANXP27824 592 aaKnown RBP18.63■□□□□ 0.57
DNMT3B-202ENST00000328111 NPM2Q86SE8 214 aaKnown RBP18.63■□□□□ 0.57
DNMT3B-202ENST00000328111 CCDC136Q96JN2 1154 aa18.63■□□□□ 0.57
DNMT3B-202ENST00000328111 ANP32AP39687 249 aaKnown RBP18.61■□□□□ 0.57
DNMT3B-202ENST00000328111 FHOD3Q2V2M9 1422 aa18.61■□□□□ 0.57
DNMT3B-202ENST00000328111 DHX57Q6P158 1386 aaKnown RBP18.61■□□□□ 0.57
DNMT3B-202ENST00000328111 FOXD1Q16676 465 aa18.59■□□□□ 0.57
DNMT3B-202ENST00000328111 PPP1R15AO75807 674 aaPredicted RBP18.55■□□□□ 0.56
DNMT3B-202ENST00000328111 CARD11Q9BXL7 1154 aa18.55■□□□□ 0.56
DNMT3B-202ENST00000328111 FMN1Q68DA7 1419 aa18.55■□□□□ 0.56
DNMT3B-202ENST00000328111 NPM1P06748 294 aaKnown RBP eCLIP18.54■□□□□ 0.56
DNMT3B-202ENST00000328111 IGF1RP08069 1367 aa18.51■□□□□ 0.55
DNMT3B-202ENST00000328111 HSPA5P11021 654 aaKnown RBP18.51■□□□□ 0.55
DNMT3B-202ENST00000328111 PDS5BQ9NTI5 1447 aa18.51■□□□□ 0.55
DNMT3B-202ENST00000328111 BCL11AQ9H165 835 aa18.5■□□□□ 0.55
DNMT3B-202ENST00000328111 ERCC6Q03468 1493 aa18.47■□□□□ 0.55
DNMT3B-202ENST00000328111 WDR43Q15061 677 aaKnown RBP eCLIP18.47■□□□□ 0.55
DNMT3B-202ENST00000328111 CCER2I3L3R5 266 aa18.47■□□□□ 0.55
DNMT3B-202ENST00000328111 MPHOSPH9Q99550 1183 aa18.46■□□□□ 0.55
DNMT3B-202ENST00000328111 KIF21BO75037 1637 aa18.45■□□□□ 0.54
DNMT3B-202ENST00000328111 SYNJ1O43426 1573 aa18.44■□□□□ 0.54
DNMT3B-202ENST00000328111 FANCD2Q9BXW9 1451 aa18.43■□□□□ 0.54
DNMT3B-202ENST00000328111 NEFMP07197 916 aa18.43■□□□□ 0.54
DNMT3B-202ENST00000328111 DCAF11Q8TEB1 546 aa18.42■□□□□ 0.54
DNMT3B-202ENST00000328111 PKD2Q13563 968 aa18.41■□□□□ 0.54
DNMT3B-202ENST00000328111 SENP3Q9H4L4 574 aaPredicted RBP18.41■□□□□ 0.54
DNMT3B-202ENST00000328111 NCAPD3P42695 1498 aa18.41■□□□□ 0.54
DNMT3B-202ENST00000328111 STAG3Q9UJ98 1225 aa18.4■□□□□ 0.54
DNMT3B-202ENST00000328111 L3MBTL2Q969R5 705 aa18.39■□□□□ 0.53
DNMT3B-202ENST00000328111 FGD5Q6ZNL6 1462 aa18.39■□□□□ 0.53
DNMT3B-202ENST00000328111 NBR1Q14596 966 aa18.36■□□□□ 0.53
DNMT3B-202ENST00000328111 ZBTB47Q9UFB7 747 aaPredicted RBP18.35■□□□□ 0.53
DNMT3B-202ENST00000328111 ARAP1Q96P48 1450 aa18.35■□□□□ 0.53
DNMT3B-202ENST00000328111 RAD54L2Q9Y4B4 1467 aa18.35■□□□□ 0.53
DNMT3B-202ENST00000328111 B4GALNT3Q6L9W6 998 aa18.34■□□□□ 0.53
DNMT3B-202ENST00000328111 PPP4R2Q9NY27 417 aa18.33■□□□□ 0.52
DNMT3B-202ENST00000328111 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.32■□□□□ 0.52
DNMT3B-202ENST00000328111 PHLDB1Q86UU1 1377 aa18.32■□□□□ 0.52
DNMT3B-202ENST00000328111 KNSTRNQ9Y448 316 aa18.31■□□□□ 0.52
DNMT3B-202ENST00000328111 SLC24A1O60721 1099 aa18.31■□□□□ 0.52
DNMT3B-202ENST00000328111 ESF1Q9H501 851 aaKnown RBP18.3■□□□□ 0.52
DNMT3B-202ENST00000328111 CC2D1BQ5T0F9 858 aaKnown RBP18.3■□□□□ 0.52
DNMT3B-202ENST00000328111 NUP155O75694 1391 aa18.27■□□□□ 0.52
DNMT3B-202ENST00000328111 PRXQ9BXM0 1461 aa18.27■□□□□ 0.51
DNMT3B-202ENST00000328111 CFTRP13569 1480 aa18.25■□□□□ 0.51
DNMT3B-202ENST00000328111 CARMIL2Q6F5E8 1435 aa18.25■□□□□ 0.51
DNMT3B-202ENST00000328111 ANP32EQ9BTT0 268 aa18.25■□□□□ 0.51
DNMT3B-202ENST00000328111 CDCA8Q53HL2 280 aa18.23■□□□□ 0.51
DNMT3B-202ENST00000328111 JPH4Q96JJ6 628 aa18.23■□□□□ 0.51
DNMT3B-202ENST00000328111 PLPPR3Q6T4P5 718 aa18.23■□□□□ 0.51
DNMT3B-202ENST00000328111 HNRNPMP52272 730 aaKnown RBP eCLIP18.22■□□□□ 0.519e-7■■□□□ 12.9
DNMT3B-202ENST00000328111 LRRC9Q6ZRR7 1453 aa18.21■□□□□ 0.51
DNMT3B-202ENST00000328111 ERICH3Q5RHP9 1530 aa18.21■□□□□ 0.51
DNMT3B-202ENST00000328111 CCDC18Q5T9S5 1454 aa18.21■□□□□ 0.51
DNMT3B-202ENST00000328111 ANKRD30AQ9BXX3 1397 aa18.21■□□□□ 0.5
DNMT3B-202ENST00000328111 RBM19Q9Y4C8 960 aaKnown RBP18.2■□□□□ 0.5
DNMT3B-202ENST00000328111 GAPVD1Q14C86 1478 aa18.19■□□□□ 0.5
DNMT3B-202ENST00000328111 TSHZ2Q9NRE2 1034 aa18.19■□□□□ 0.5
DNMT3B-202ENST00000328111 TMF1P82094 1093 aa18.18■□□□□ 0.5
DNMT3B-202ENST00000328111 TOP2BQ02880 1626 aa18.18■□□□□ 0.5
DNMT3B-202ENST00000328111 NEUROD2Q15784 382 aa18.18■□□□□ 0.5
DNMT3B-202ENST00000328111 FGD6Q6ZV73 1430 aa18.18■□□□□ 0.5
DNMT3B-202ENST00000328111 CUX1P39880 1505 aa18.17■□□□□ 0.5
DNMT3B-202ENST00000328111 UPF2Q9HAU5 1272 aaKnown RBP18.17■□□□□ 0.5
DNMT3B-202ENST00000328111 RRBP1Q9P2E9 1410 aaKnown RBP18.17■□□□□ 0.5
DNMT3B-202ENST00000328111 TNNT2P45379 298 aaPredicted RBP18.15■□□□□ 0.5
DNMT3B-202ENST00000328111 BICRAQ9NZM4 1560 aa18.15■□□□□ 0.5
DNMT3B-202ENST00000328111 ZNF644Q9H582 1327 aaPredicted RBP18.14■□□□□ 0.49
DNMT3B-202ENST00000328111 ROCK2O75116 1388 aaKnown RBP18.11■□□□□ 0.49
DNMT3B-202ENST00000328111 MYOM3Q5VTT5 1437 aa18.09■□□□□ 0.49
DNMT3B-202ENST00000328111 PRKRIP1Q9H875 184 aaPredicted RBP18.09■□□□□ 0.49
DNMT3B-202ENST00000328111 NESP48681 1621 aa18.09■□□□□ 0.49
DNMT3B-202ENST00000328111 CASKIN1Q8WXD9 1431 aa18.08■□□□□ 0.49
DNMT3B-202ENST00000328111 EFCAB2Q5VUJ9 269 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms