RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 SHROOM2Q13796 1616 aa27.41■■□□□ 1.98
HDDC2-201ENST00000318787 RUSC2Q8N2Y8 1516 aa27.41■■□□□ 1.98
HDDC2-201ENST00000318787 CARMIL1Q5VZK9 1371 aa27.34■■□□□ 1.97
HDDC2-201ENST00000318787 PRG4Q92954 1404 aaPredicted RBP27.3■■□□□ 1.96
HDDC2-201ENST00000318787 TRHP20396 242 aaPredicted RBP27.29■■□□□ 1.96
HDDC2-201ENST00000318787 JPH4Q96JJ6 628 aa27.29■■□□□ 1.96
HDDC2-201ENST00000318787 KIAA0586Q9BVV6 1533 aa27.23■■□□□ 1.95
HDDC2-201ENST00000318787 PHF23Q9BUL5 403 aaPredicted RBP27.23■■□□□ 1.95
HDDC2-201ENST00000318787 RAPGEF2Q9Y4G8 1499 aa27.17■■□□□ 1.94
HDDC2-201ENST00000318787 IQGAP2Q13576 1575 aa27.14■■□□□ 1.93
HDDC2-201ENST00000318787 TTBK1Q5TCY1 1321 aaPredicted RBP27.09■■□□□ 1.93
HDDC2-201ENST00000318787 CTTNBP2Q8WZ74 1663 aa27.07■■□□□ 1.92
HDDC2-201ENST00000318787 CARMIL2Q6F5E8 1435 aa27.01■■□□□ 1.91
HDDC2-201ENST00000318787 ADCY10Q96PN6 1610 aa26.96■■□□□ 1.91
HDDC2-201ENST00000318787 PRXQ9BXM0 1461 aa26.95■■□□□ 1.9
HDDC2-201ENST00000318787 FAM9AQ8IZU1 332 aaPredicted RBP26.95■■□□□ 1.9
HDDC2-201ENST00000318787 PTPRGP23470 1445 aa26.92■■□□□ 1.9
HDDC2-201ENST00000318787 NPM1P06748 294 aaKnown RBP eCLIP26.91■■□□□ 1.9
HDDC2-201ENST00000318787 CSRNP3Q8WYN3 585 aa26.91■■□□□ 1.9
HDDC2-201ENST00000318787 TNIKQ9UKE5 1360 aa26.9■■□□□ 1.9
HDDC2-201ENST00000318787 DISP1Q96F81 1524 aa26.89■■□□□ 1.9
HDDC2-201ENST00000318787 UGGT2Q9NYU1 1516 aa26.89■■□□□ 1.9
HDDC2-201ENST00000318787 KIAA0556O60303 1618 aa26.88■■□□□ 1.89
HDDC2-201ENST00000318787 EEA1Q15075 1411 aa26.86■■□□□ 1.89
HDDC2-201ENST00000318787 KIF13AQ9H1H9 1805 aa26.83■■□□□ 1.89
HDDC2-201ENST00000318787 GOLGA3Q08378 1498 aa26.76■■□□□ 1.87
HDDC2-201ENST00000318787 MAPKBP1O60336 1514 aa26.75■■□□□ 1.87
HDDC2-201ENST00000318787 EHMT2Q96KQ7 1210 aa26.73■■□□□ 1.87
HDDC2-201ENST00000318787 UACAQ9BZF9 1416 aa26.72■■□□□ 1.87
HDDC2-201ENST00000318787 RANGAP1P46060 587 aaPredicted RBP26.71■■□□□ 1.87
HDDC2-201ENST00000318787 ABCC2Q92887 1545 aa26.71■■□□□ 1.87
HDDC2-201ENST00000318787 FAM69CQ0P6D2 419 aa26.69■■□□□ 1.86
HDDC2-201ENST00000318787 DIP2BQ9P265 1576 aa26.69■■□□□ 1.86
HDDC2-201ENST00000318787 KIF21BO75037 1637 aa26.68■■□□□ 1.86
HDDC2-201ENST00000318787 P3H3Q8IVL6 736 aa26.68■■□□□ 1.86
HDDC2-201ENST00000318787 ABCC10Q5T3U5 1492 aa26.67■■□□□ 1.86
HDDC2-201ENST00000318787 UHRF1BP1LA0JNW5 1464 aa26.66■■□□□ 1.86
HDDC2-201ENST00000318787 TSPOAP1O95153 1857 aa26.65■■□□□ 1.86
HDDC2-201ENST00000318787 ZCCHC11Q5TAX3 1644 aaKnown RBP26.64■■□□□ 1.86
HDDC2-201ENST00000318787 PLB1Q6P1J6 1458 aa26.63■■□□□ 1.85
HDDC2-201ENST00000318787 ASXL2Q76L83 1435 aa26.59■■□□□ 1.85
HDDC2-201ENST00000318787 SAMD9Q5K651 1589 aa26.58■■□□□ 1.85
HDDC2-201ENST00000318787 KDM5BQ9UGL1 1544 aa26.56■■□□□ 1.84
HDDC2-201ENST00000318787 ABCA8O94911 1581 aa26.55■■□□□ 1.84
HDDC2-201ENST00000318787 UBTFP17480 764 aaKnown RBP26.53■■□□□ 1.84
HDDC2-201ENST00000318787 ARID3CA6NKF2 412 aa26.5■■□□□ 1.83
HDDC2-201ENST00000318787 FHOD3Q2V2M9 1422 aa26.46■■□□□ 1.83
HDDC2-201ENST00000318787 RAPGEF6Q8TEU7 1601 aa26.44■■□□□ 1.82
HDDC2-201ENST00000318787 EFCAB5A4FU69 1503 aa26.41■■□□□ 1.82
HDDC2-201ENST00000318787 EPRSP07814 1512 aaKnown RBP26.41■■□□□ 1.82
HDDC2-201ENST00000318787 WDR7Q9Y4E6 1490 aa26.41■■□□□ 1.82
HDDC2-201ENST00000318787 GLI2P10070 1586 aa26.41■■□□□ 1.82
HDDC2-201ENST00000318787 KDM6BO15054 1643 aa26.39■■□□□ 1.81
HDDC2-201ENST00000318787 PPRC1Q5VV67 1664 aaKnown RBP26.37■■□□□ 1.81
HDDC2-201ENST00000318787 KCNH8Q96L42 1107 aa26.36■■□□□ 1.81
HDDC2-201ENST00000318787 MAP3K4Q9Y6R4 1608 aa26.36■■□□□ 1.81
HDDC2-201ENST00000318787 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.35■■□□□ 1.81
HDDC2-201ENST00000318787 HNRNPUL2Q1KMD3 747 aaKnown RBP26.35■■□□□ 1.81
HDDC2-201ENST00000318787 ATP10BO94823 1461 aa26.31■■□□□ 1.8
HDDC2-201ENST00000318787 CFAP43Q8NDM7 1665 aa26.27■■□□□ 1.8
HDDC2-201ENST00000318787 NUP153P49790 1475 aaKnown RBP26.27■■□□□ 1.8
HDDC2-201ENST00000318787 TEX14Q8IWB6 1497 aa26.23■■□□□ 1.79
HDDC2-201ENST00000318787 ARHGAP35Q9NRY4 1499 aa26.23■■□□□ 1.79
HDDC2-201ENST00000318787 ATP1B4Q9UN42 357 aaPredicted RBP26.22■■□□□ 1.79
HDDC2-201ENST00000318787 CD109Q6YHK3 1445 aa26.2■■□□□ 1.78
HDDC2-201ENST00000318787 FMN1Q68DA7 1419 aa26.16■■□□□ 1.78
HDDC2-201ENST00000318787 HECW1Q76N89 1606 aa26.15■■□□□ 1.78
HDDC2-201ENST00000318787 CDK13Q14004 1512 aaKnown RBP26.14■■□□□ 1.78
HDDC2-201ENST00000318787 ABCA9Q8IUA7 1624 aa26.12■■□□□ 1.77
HDDC2-201ENST00000318787 MAGI3Q5TCQ9 1506 aa26.1■■□□□ 1.77
HDDC2-201ENST00000318787 PLEKHD1A6NEE1 506 aa26.09■■□□□ 1.77
HDDC2-201ENST00000318787 COL17A1Q9UMD9 1497 aaPredicted RBP26.07■■□□□ 1.76
HDDC2-201ENST00000318787 LRRIQ1Q96JM4 1722 aa26.05■■□□□ 1.76
HDDC2-201ENST00000318787 CLIP1P30622 1438 aa26.03■■□□□ 1.76
HDDC2-201ENST00000318787 PCF11O94913 1555 aaKnown RBP26.03■■□□□ 1.76
HDDC2-201ENST00000318787 TTC37Q6PGP7 1564 aa25.98■■□□□ 1.75
HDDC2-201ENST00000318787 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.97■■□□□ 1.755e-7■■■□□ 15.7
HDDC2-201ENST00000318787 KDM4FA0A1W2PPD8 638 aa25.95■■□□□ 1.74
HDDC2-201ENST00000318787 CDK11AQ9UQ88 783 aaPredicted RBP25.93■■□□□ 1.74
HDDC2-201ENST00000318787 CASKIN1Q8WXD9 1431 aa25.91■■□□□ 1.74
HDDC2-201ENST00000318787 KIF14Q15058 1648 aa25.89■■□□□ 1.74
HDDC2-201ENST00000318787 CFAP74Q9C0B2 1584 aa25.89■■□□□ 1.74
HDDC2-201ENST00000318787 NEO1Q92859 1461 aa25.88■■□□□ 1.73
HDDC2-201ENST00000318787 MYO5CQ9NQX4 1742 aa25.88■■□□□ 1.73
HDDC2-201ENST00000318787 ARAP3Q8WWN8 1544 aa25.88■■□□□ 1.73
HDDC2-201ENST00000318787 CCDC18Q5T9S5 1454 aa25.87■■□□□ 1.73
HDDC2-201ENST00000318787 FYCO1Q9BQS8 1478 aa25.87■■□□□ 1.73
HDDC2-201ENST00000318787 CEP162Q5TB80 1403 aa25.86■■□□□ 1.73
HDDC2-201ENST00000318787 FANCAO15360 1455 aa25.85■■□□□ 1.73
HDDC2-201ENST00000318787 LOC105371045A0A1W2PR82 267 aa25.84■■□□□ 1.73
HDDC2-201ENST00000318787 TROQ12816 1431 aaPredicted RBP25.84■■□□□ 1.73
HDDC2-201ENST00000318787 PHLDB1Q86UU1 1377 aa25.83■■□□□ 1.73
HDDC2-201ENST00000318787 RAPGEF3O95398 923 aa25.82■■□□□ 1.72
HDDC2-201ENST00000318787 AKNAQ7Z591 1439 aa25.79■■□□□ 1.72
HDDC2-201ENST00000318787 ADGRL1O94910 1474 aa25.78■■□□□ 1.72
HDDC2-201ENST00000318787 FRMPD1Q5SYB0 1578 aa25.78■■□□□ 1.72
HDDC2-201ENST00000318787 RICTORQ6R327 1708 aa25.76■■□□□ 1.71
HDDC2-201ENST00000318787 DENND4BO75064 1496 aaPredicted RBP25.75■■□□□ 1.71
HDDC2-201ENST00000318787 PLCH2O75038 1416 aa25.74■■□□□ 1.71
HDDC2-201ENST00000318787 ARHGAP5Q13017 1502 aa25.74■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 156 ms