RNA–Protein interactions for RNA: ENST00000318023.11

CAPN3-201, Transcript of calpain 3, humanhuman

TSL 5 BASIC

Gene CAPN3, Length 3,172 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-201ENST00000318023 WDR97A6NE52 1622 aa14.5□□□□□ -0.09
CAPN3-201ENST00000318023 TRIM26Q12899 539 aaPredicted RBP14.5□□□□□ -0.09
CAPN3-201ENST00000318023 JPH4Q96JJ6 628 aa14.5□□□□□ -0.09
CAPN3-201ENST00000318023 BCL11AQ9H165 835 aa14.5□□□□□ -0.09
CAPN3-201ENST00000318023 GRIN2AQ12879 1464 aa14.5□□□□□ -0.09
CAPN3-201ENST00000318023 TRHP20396 242 aaPredicted RBP14.49□□□□□ -0.09
CAPN3-201ENST00000318023 CSRNP3Q8WYN3 585 aa14.48□□□□□ -0.09
CAPN3-201ENST00000318023 ARID3CA6NKF2 412 aa14.47□□□□□ -0.09
CAPN3-201ENST00000318023 ARHGEF11O15085 1522 aa14.47□□□□□ -0.09
CAPN3-201ENST00000318023 ZEB1P37275 1124 aaPredicted RBP14.46□□□□□ -0.09
CAPN3-201ENST00000318023 UBTFP17480 764 aaKnown RBP14.45□□□□□ -0.1
CAPN3-201ENST00000318023 ADAMTS12P58397 1594 aa14.43□□□□□ -0.1
CAPN3-201ENST00000318023 ERICH3Q5RHP9 1530 aa14.42□□□□□ -0.1
CAPN3-201ENST00000318023 RIMBP3CA6NJZ7 1639 aa14.41□□□□□ -0.1
CAPN3-201ENST00000318023 RIMBP3BA6NNM3 1639 aa14.41□□□□□ -0.1
CAPN3-201ENST00000318023 RIMBP3Q9UFD9 1639 aa14.41□□□□□ -0.1
CAPN3-201ENST00000318023 CEP170Q5SW79 1584 aa14.4□□□□□ -0.1
CAPN3-201ENST00000318023 ERCC6L2Q5T890 1561 aa14.4□□□□□ -0.1
CAPN3-201ENST00000318023 PRG4Q92954 1404 aaPredicted RBP14.4□□□□□ -0.1
CAPN3-201ENST00000318023 LOC105371045A0A1W2PR82 267 aa14.4□□□□□ -0.1
CAPN3-201ENST00000318023 ARAP1Q96P48 1450 aa14.37□□□□□ -0.11
CAPN3-201ENST00000318023 CENPBP07199 599 aaPredicted RBP14.36□□□□□ -0.11
CAPN3-201ENST00000318023 NUP160Q12769 1436 aa14.35□□□□□ -0.11
CAPN3-201ENST00000318023 ATP1B4Q9UN42 357 aaPredicted RBP14.34□□□□□ -0.11
CAPN3-201ENST00000318023 RAPGEF2Q9Y4G8 1499 aa14.34□□□□□ -0.11
CAPN3-201ENST00000318023 PRKCSHP14314 528 aaPredicted RBP14.32□□□□□ -0.12
CAPN3-201ENST00000318023 CLASP1Q7Z460 1538 aa14.32□□□□□ -0.12
CAPN3-201ENST00000318023 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.28□□□□□ -0.12
CAPN3-201ENST00000318023 HNRNPUL2Q1KMD3 747 aaKnown RBP14.28□□□□□ -0.12
CAPN3-201ENST00000318023 NPM1P06748 294 aaKnown RBP eCLIP14.27□□□□□ -0.12
CAPN3-201ENST00000318023 KIAA0586Q9BVV6 1533 aa14.27□□□□□ -0.13
CAPN3-201ENST00000318023 CUL7Q14999 1698 aa14.24□□□□□ -0.13
CAPN3-201ENST00000318023 PTPRGP23470 1445 aa14.24□□□□□ -0.13
CAPN3-201ENST00000318023 PRXQ9BXM0 1461 aa14.23□□□□□ -0.13
CAPN3-201ENST00000318023 KCNH8Q96L42 1107 aa14.2□□□□□ -0.14
CAPN3-201ENST00000318023 CARMIL2Q6F5E8 1435 aa14.2□□□□□ -0.14
CAPN3-201ENST00000318023 IQGAP2Q13576 1575 aa14.18□□□□□ -0.14
CAPN3-201ENST00000318023 FAM69CQ0P6D2 419 aa14.16□□□□□ -0.14
CAPN3-201ENST00000318023 DIEXFQ68CQ4 756 aaKnown RBP14.16□□□□□ -0.14
CAPN3-201ENST00000318023 EEA1Q15075 1411 aa14.15□□□□□ -0.14
CAPN3-201ENST00000318023 TNIKQ9UKE5 1360 aa14.15□□□□□ -0.14
CAPN3-201ENST00000318023 YTHDC1Q96MU7 727 aaKnown RBP14.15□□□□□ -0.14
CAPN3-201ENST00000318023 FHOD3Q2V2M9 1422 aa14.14□□□□□ -0.15
CAPN3-201ENST00000318023 DISP1Q96F81 1524 aa14.12□□□□□ -0.15
CAPN3-201ENST00000318023 PLB1Q6P1J6 1458 aa14.12□□□□□ -0.15
CAPN3-201ENST00000318023 ANP32EQ9BTT0 268 aa14.09□□□□□ -0.15
CAPN3-201ENST00000318023 SHROOM2Q13796 1616 aa14.08□□□□□ -0.15
CAPN3-201ENST00000318023 GOLGA3Q08378 1498 aa14.08□□□□□ -0.16
CAPN3-201ENST00000318023 UACAQ9BZF9 1416 aa14.05□□□□□ -0.16
CAPN3-201ENST00000318023 UGGT2Q9NYU1 1516 aa14.02□□□□□ -0.17
CAPN3-201ENST00000318023 KIAA0556O60303 1618 aa14.01□□□□□ -0.17
CAPN3-201ENST00000318023 ADCY10Q96PN6 1610 aa14□□□□□ -0.17
CAPN3-201ENST00000318023 CTTNBP2Q8WZ74 1663 aa13.99□□□□□ -0.17
CAPN3-201ENST00000318023 ASXL2Q76L83 1435 aa13.98□□□□□ -0.17
CAPN3-201ENST00000318023 KIF21BO75037 1637 aa13.97□□□□□ -0.17
CAPN3-201ENST00000318023 CLIP1P30622 1438 aa13.96□□□□□ -0.18
CAPN3-201ENST00000318023 ABCC2Q92887 1545 aa13.94□□□□□ -0.18
CAPN3-201ENST00000318023 ARHGAP35Q9NRY4 1499 aa13.94□□□□□ -0.18
CAPN3-201ENST00000318023 PLEKHD1A6NEE1 506 aa13.93□□□□□ -0.18
CAPN3-201ENST00000318023 CCER1Q8TC90 406 aaPredicted RBP13.93□□□□□ -0.18
CAPN3-201ENST00000318023 CEP162Q5TB80 1403 aa13.89□□□□□ -0.19
CAPN3-201ENST00000318023 ATP10BO94823 1461 aa13.89□□□□□ -0.19
CAPN3-201ENST00000318023 TSPOAP1O95153 1857 aa13.89□□□□□ -0.19
CAPN3-201ENST00000318023 CDK13Q14004 1512 aaKnown RBP13.88□□□□□ -0.19
CAPN3-201ENST00000318023 ABCC10Q5T3U5 1492 aa13.86□□□□□ -0.19
CAPN3-201ENST00000318023 ZNF777Q9ULD5 760 aaPredicted RBP13.86□□□□□ -0.19
CAPN3-201ENST00000318023 MYT1LQ9UL68 1186 aa13.85□□□□□ -0.19
CAPN3-201ENST00000318023 NUP153P49790 1475 aaKnown RBP13.85□□□□□ -0.19
CAPN3-201ENST00000318023 TSHZ2Q9NRE2 1034 aa13.84□□□□□ -0.19
CAPN3-201ENST00000318023 KDM5BQ9UGL1 1544 aa13.84□□□□□ -0.19
CAPN3-201ENST00000318023 SAMD9Q5K651 1589 aa13.84□□□□□ -0.19
CAPN3-201ENST00000318023 ABCA8O94911 1581 aa13.83□□□□□ -0.2
CAPN3-201ENST00000318023 ZCCHC11Q5TAX3 1644 aaKnown RBP13.83□□□□□ -0.2
CAPN3-201ENST00000318023 RAPGEF3O95398 923 aa13.82□□□□□ -0.2
CAPN3-201ENST00000318023 PLPPR3Q6T4P5 718 aa13.82□□□□□ -0.2
CAPN3-201ENST00000318023 WDR7Q9Y4E6 1490 aa13.82□□□□□ -0.2
CAPN3-201ENST00000318023 FMN1Q68DA7 1419 aa13.82□□□□□ -0.2
CAPN3-201ENST00000318023 UHRF1BP1LA0JNW5 1464 aa13.82□□□□□ -0.2
CAPN3-201ENST00000318023 CD109Q6YHK3 1445 aa13.81□□□□□ -0.2
CAPN3-201ENST00000318023 CDK11AQ9UQ88 783 aaPredicted RBP13.81□□□□□ -0.2
CAPN3-201ENST00000318023 EPRSP07814 1512 aaKnown RBP13.8□□□□□ -0.2
CAPN3-201ENST00000318023 ERICH6Q7L0X2 663 aa13.8□□□□□ -0.2
CAPN3-201ENST00000318023 RAPGEF6Q8TEU7 1601 aa13.8□□□□□ -0.2
CAPN3-201ENST00000318023 EFCAB5A4FU69 1503 aa13.79□□□□□ -0.2
CAPN3-201ENST00000318023 MAPKBP1O60336 1514 aa13.79□□□□□ -0.2
CAPN3-201ENST00000318023 DIP2BQ9P265 1576 aa13.78□□□□□ -0.2
CAPN3-201ENST00000318023 APLP2Q06481 763 aa13.77□□□□□ -0.2
CAPN3-201ENST00000318023 MIER1Q8N108 512 aa13.77□□□□□ -0.2
CAPN3-201ENST00000318023 SUPT16HQ9Y5B9 1047 aaKnown RBP13.76□□□□□ -0.21
CAPN3-201ENST00000318023 KIF13AQ9H1H9 1805 aa13.74□□□□□ -0.21
CAPN3-201ENST00000318023 MTUS2Q5JR59 1369 aa13.74□□□□□ -0.21
CAPN3-201ENST00000318023 KANK4Q5T7N3 995 aaPredicted RBP13.73□□□□□ -0.21
CAPN3-201ENST00000318023 PCF11O94913 1555 aaKnown RBP13.73□□□□□ -0.21
CAPN3-201ENST00000318023 COL17A1Q9UMD9 1497 aaPredicted RBP13.73□□□□□ -0.21
CAPN3-201ENST00000318023 MLECQ14165 292 aa13.71□□□□□ -0.21
CAPN3-201ENST00000318023 ARID4BQ4LE39 1312 aaPredicted RBP13.71□□□□□ -0.21
CAPN3-201ENST00000318023 AEBP2Q6ZN18 517 aaPredicted RBP13.7□□□□□ -0.22
CAPN3-201ENST00000318023 ZNF316A6NFI3 1004 aaPredicted RBP13.69□□□□□ -0.22
CAPN3-201ENST00000318023 AFAP1Q8N556 730 aa13.69□□□□□ -0.22
CAPN3-201ENST00000318023 CASKIN1Q8WXD9 1431 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms