RNA–Protein interactions for RNA: ENST00000314289.12

RNF4-201, Transcript of ring finger protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF4, Length 3,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-201ENST00000314289 ABCA5Q8WWZ7 1642 aa18.64■□□□□ 0.57
RNF4-201ENST00000314289 CUL7Q14999 1698 aa18.63■□□□□ 0.57
RNF4-201ENST00000314289 PELP1Q8IZL8 1130 aaKnown RBP18.62■□□□□ 0.57
RNF4-201ENST00000314289 MRC2Q9UBG0 1479 aa18.61■□□□□ 0.57
RNF4-201ENST00000314289 TARBP1Q13395 1621 aaKnown RBP18.61■□□□□ 0.57
RNF4-201ENST00000314289 PCF11O94913 1555 aaKnown RBP18.57■□□□□ 0.56
RNF4-201ENST00000314289 ZNF608Q9ULD9 1512 aaPredicted RBP18.56■□□□□ 0.56
RNF4-201ENST00000314289 ERCC6Q03468 1493 aa18.56■□□□□ 0.56
RNF4-201ENST00000314289 CTTNBP2Q8WZ74 1663 aa18.56■□□□□ 0.56
RNF4-201ENST00000314289 TIAM1Q13009 1591 aa18.55■□□□□ 0.56
RNF4-201ENST00000314289 FHAD1B1AJZ9 1412 aa18.54■□□□□ 0.56
RNF4-201ENST00000314289 CCNB3Q8WWL7 1395 aa18.53■□□□□ 0.56
RNF4-201ENST00000314289 FAM50AQ14320 339 aaKnown RBP18.51■□□□□ 0.55
RNF4-201ENST00000314289 LRRC9Q6ZRR7 1453 aa18.5■□□□□ 0.55
RNF4-201ENST00000314289 RRBP1Q9P2E9 1410 aaKnown RBP18.5■□□□□ 0.55
RNF4-201ENST00000314289 PHLDB1Q86UU1 1377 aa18.5■□□□□ 0.55
RNF4-201ENST00000314289 ARID3CA6NKF2 412 aa18.5■□□□□ 0.55
RNF4-201ENST00000314289 PBRM1Q86U86 1689 aa18.47■□□□□ 0.55
RNF4-201ENST00000314289 EFCAB5A4FU69 1503 aa18.47■□□□□ 0.55
RNF4-201ENST00000314289 FBLN2P98095 1184 aa18.44■□□□□ 0.54
RNF4-201ENST00000314289 CASKIN1Q8WXD9 1431 aa18.43■□□□□ 0.54
RNF4-201ENST00000314289 WDR62O43379 1518 aa18.43■□□□□ 0.54
RNF4-201ENST00000314289 GRIN2BQ13224 1484 aa18.43■□□□□ 0.54
RNF4-201ENST00000314289 FMN1Q68DA7 1419 aa18.42■□□□□ 0.54
RNF4-201ENST00000314289 IFT140Q96RY7 1462 aa18.42■□□□□ 0.54
RNF4-201ENST00000314289 FYCO1Q9BQS8 1478 aa18.42■□□□□ 0.54
RNF4-201ENST00000314289 MAP3K1Q13233 1512 aa18.4■□□□□ 0.54
RNF4-201ENST00000314289 ADAMTS12P58397 1594 aa18.39■□□□□ 0.54
RNF4-201ENST00000314289 SNAPC4Q5SXM2 1469 aa18.39■□□□□ 0.53
RNF4-201ENST00000314289 DHX57Q6P158 1386 aaKnown RBP18.39■□□□□ 0.53
RNF4-201ENST00000314289 CFAP43Q8NDM7 1665 aa18.38■□□□□ 0.53
RNF4-201ENST00000314289 SAMD9Q5K651 1589 aa18.37■□□□□ 0.53
RNF4-201ENST00000314289 MTUS2Q5JR59 1369 aa18.37■□□□□ 0.53
RNF4-201ENST00000314289 EIF4G3O43432 1585 aaKnown RBP18.34■□□□□ 0.53
RNF4-201ENST00000314289 DIEXFQ68CQ4 756 aaKnown RBP18.34■□□□□ 0.53
RNF4-201ENST00000314289 IQGAP2Q13576 1575 aa18.33■□□□□ 0.52
RNF4-201ENST00000314289 CHMP7Q8WUX9 453 aaPredicted RBP18.33■□□□□ 0.52
RNF4-201ENST00000314289 LRRIQ1Q96JM4 1722 aa18.32■□□□□ 0.52
RNF4-201ENST00000314289 RAB3GAP2Q9H2M9 1393 aa18.32■□□□□ 0.52
RNF4-201ENST00000314289 THOC2Q8NI27 1593 aaKnown RBP18.32■□□□□ 0.52
RNF4-201ENST00000314289 ZNF316A6NFI3 1004 aaPredicted RBP18.29■□□□□ 0.52
RNF4-201ENST00000314289 NEUROD1Q13562 356 aa18.27■□□□□ 0.52
RNF4-201ENST00000314289 ACIN1Q9UKV3 1341 aaKnown RBP18.27■□□□□ 0.52
RNF4-201ENST00000314289 GRIN2AQ12879 1464 aa18.25■□□□□ 0.51
RNF4-201ENST00000314289 CDK13Q14004 1512 aaKnown RBP18.23■□□□□ 0.51
RNF4-201ENST00000314289 FGD6Q6ZV73 1430 aa18.22■□□□□ 0.51
RNF4-201ENST00000314289 SETD5Q9C0A6 1442 aa18.22■□□□□ 0.51
RNF4-201ENST00000314289 NCOA2Q15596 1464 aa18.22■□□□□ 0.51
RNF4-201ENST00000314289 MAGI3Q5TCQ9 1506 aa18.22■□□□□ 0.51
RNF4-201ENST00000314289 KIAA0586Q9BVV6 1533 aa18.2■□□□□ 0.5
RNF4-201ENST00000314289 DISP1Q96F81 1524 aa18.18■□□□□ 0.5
RNF4-201ENST00000314289 CHIC2Q9UKJ5 165 aa18.17■□□□□ 0.5
RNF4-201ENST00000314289 EPRSP07814 1512 aaKnown RBP18.17■□□□□ 0.5
RNF4-201ENST00000314289 SIN3AQ96ST3 1273 aa18.17■□□□□ 0.5
RNF4-201ENST00000314289 UGGT2Q9NYU1 1516 aa18.17■□□□□ 0.5
RNF4-201ENST00000314289 GTF3C3Q9Y5Q9 886 aa18.16■□□□□ 0.5
RNF4-201ENST00000314289 PTPRKQ15262 1439 aa18.16■□□□□ 0.5
RNF4-201ENST00000314289 CLSPNQ9HAW4 1339 aa18.15■□□□□ 0.5
RNF4-201ENST00000314289 SYNJ2O15056 1496 aa18.15■□□□□ 0.5
RNF4-201ENST00000314289 MAGI1Q96QZ7 1491 aaPredicted RBP18.15■□□□□ 0.5
RNF4-201ENST00000314289 CEP170Q5SW79 1584 aa18.15■□□□□ 0.5
RNF4-201ENST00000314289 MYOM3Q5VTT5 1437 aa18.14■□□□□ 0.49
RNF4-201ENST00000314289 HECW1Q76N89 1606 aa18.14■□□□□ 0.49
RNF4-201ENST00000314289 JPH4Q96JJ6 628 aa18.13■□□□□ 0.49
RNF4-201ENST00000314289 KIAA0556O60303 1618 aa18.13■□□□□ 0.49
RNF4-201ENST00000314289 SUPT6HQ7KZ85 1726 aaKnown RBP18.12■□□□□ 0.49
RNF4-201ENST00000314289 EHBP1L1Q8N3D4 1523 aa18.12■□□□□ 0.49
RNF4-201ENST00000314289 CCDC18Q5T9S5 1454 aa18.11■□□□□ 0.49
RNF4-201ENST00000314289 CENPBP07199 599 aaPredicted RBP18.11■□□□□ 0.49
RNF4-201ENST00000314289 RRP7BPQ9NSQ0 103 aa18.11■□□□□ 0.49
RNF4-201ENST00000314289 MAPKBP1O60336 1514 aa18.11■□□□□ 0.49
RNF4-201ENST00000314289 PLB1Q6P1J6 1458 aa18.08■□□□□ 0.49
RNF4-201ENST00000314289 NUP153P49790 1475 aaKnown RBP18.07■□□□□ 0.48
RNF4-201ENST00000314289 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.06■□□□□ 0.48
RNF4-201ENST00000314289 ZNF644Q9H582 1327 aaPredicted RBP18.05■□□□□ 0.48
RNF4-201ENST00000314289 PTPN23Q9H3S7 1636 aa18.05■□□□□ 0.48
RNF4-201ENST00000314289 MIER1Q8N108 512 aa18.04■□□□□ 0.48
RNF4-201ENST00000314289 NUP160Q12769 1436 aa18.02■□□□□ 0.48
RNF4-201ENST00000314289 ARHGEF11O15085 1522 aa18.02■□□□□ 0.47
RNF4-201ENST00000314289 RAPGEF6Q8TEU7 1601 aa18.01■□□□□ 0.47
RNF4-201ENST00000314289 PRG4Q92954 1404 aaPredicted RBP18.01■□□□□ 0.47
RNF4-201ENST00000314289 YTHDC1Q96MU7 727 aaKnown RBP18.01■□□□□ 0.47
RNF4-201ENST00000314289 ZNF777Q9ULD5 760 aaPredicted RBP17.99■□□□□ 0.47
RNF4-201ENST00000314289 NAIPQ13075 1403 aa17.99■□□□□ 0.47
RNF4-201ENST00000314289 CARMIL2Q6F5E8 1435 aa17.99■□□□□ 0.47
RNF4-201ENST00000314289 CDK11AQ9UQ88 783 aaPredicted RBP17.98■□□□□ 0.47
RNF4-201ENST00000314289 HFM1A2PYH4 1435 aa17.98■□□□□ 0.47
RNF4-201ENST00000314289 TRIM52Q96A61 297 aa17.97■□□□□ 0.47
RNF4-201ENST00000314289 HIRIP3Q9BW71 556 aaPredicted RBP17.94■□□□□ 0.46
RNF4-201ENST00000314289 CFDP1Q9UEE9 299 aaPredicted RBP17.91■□□□□ 0.46
RNF4-201ENST00000314289 TCOF1Q13428 1488 aaKnown RBP17.91■□□□□ 0.46
RNF4-201ENST00000314289 FOXD1Q16676 465 aa17.9■□□□□ 0.46
RNF4-201ENST00000314289 MIA2Q96PC5 1412 aa17.89■□□□□ 0.45
RNF4-201ENST00000314289 KDM6BO15054 1643 aa17.89■□□□□ 0.45
RNF4-201ENST00000314289 UACAQ9BZF9 1416 aa17.89■□□□□ 0.45
RNF4-201ENST00000314289 TROQ12816 1431 aaPredicted RBP17.88■□□□□ 0.45
RNF4-201ENST00000314289 CHD1O14646 1710 aa17.88■□□□□ 0.45
RNF4-201ENST00000314289 KIF14Q15058 1648 aa17.88■□□□□ 0.45
RNF4-201ENST00000314289 PLEKHD1A6NEE1 506 aa17.87■□□□□ 0.45
RNF4-201ENST00000314289 PTPRGP23470 1445 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms