RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 GOLGA6L4A6NEF3 574 aa10.06□□□□□ -0.8
LIMCH1-201ENST00000313860 RRP12Q5JTH9 1297 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-201ENST00000313860 FKBP8Q14318 412 aa10.03□□□□□ -0.8
LIMCH1-201ENST00000313860 PLCD4Q9BRC7 762 aa10.03□□□□□ -0.8
LIMCH1-201ENST00000313860 LAS1LQ9Y4W2 734 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-201ENST00000313860 UBTFP17480 764 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-201ENST00000313860 MSNP26038 577 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-201ENST00000313860 USP35Q9P2H5 1018 aa10.02□□□□□ -0.81
LIMCH1-201ENST00000313860 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-201ENST00000313860 HNRNPUL2Q1KMD3 747 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-201ENST00000313860 DRC7Q8IY82 874 aa10.01□□□□□ -0.81
LIMCH1-201ENST00000313860 KRI1Q8N9T8 703 aaKnown RBP10□□□□□ -0.81
LIMCH1-201ENST00000313860 ANP32CO43423 234 aa9.99□□□□□ -0.81
LIMCH1-201ENST00000313860 L1TD1Q5T7N2 865 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-201ENST00000313860 LMOD2Q6P5Q4 547 aa9.97□□□□□ -0.81
LIMCH1-201ENST00000313860 NRDCO43847 1150 aa9.97□□□□□ -0.81
LIMCH1-201ENST00000313860 KIAA2012Q0VF49 1180 aa9.95□□□□□ -0.82
LIMCH1-201ENST00000313860 TRIM41Q8WV44 630 aa9.94□□□□□ -0.82
LIMCH1-201ENST00000313860 ZNF771Q7L3S4 317 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-201ENST00000313860 C14orf37Q86TY3 774 aa9.93□□□□□ -0.82
LIMCH1-201ENST00000313860 SCAF1Q9H7N4 1312 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-201ENST00000313860 BECN1Q14457 450 aa9.92□□□□□ -0.82
LIMCH1-201ENST00000313860 A0A0G2JS52 829 aa9.91□□□□□ -0.82
LIMCH1-201ENST00000313860 DEKP35659 375 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-201ENST00000313860 WDR43Q15061 677 aaKnown RBP eCLIP9.9□□□□□ -0.83
LIMCH1-201ENST00000313860 HSP90AB3PQ58FF7 597 aa9.9□□□□□ -0.83
LIMCH1-201ENST00000313860 SALL2Q9Y467 1007 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-201ENST00000313860 HSP90AA2PQ14568 343 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-201ENST00000313860 ACIN1Q9UKV3 1341 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-201ENST00000313860 MAP7D2Q96T17 732 aa9.88□□□□□ -0.83
LIMCH1-201ENST00000313860 NEUROD1Q13562 356 aa9.88□□□□□ -0.83
LIMCH1-201ENST00000313860 HTATSF1O43719 755 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-201ENST00000313860 GOLGA6L3A6NEY3 463 aa9.87□□□□□ -0.83
LIMCH1-201ENST00000313860 DHX37Q8IY37 1157 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-201ENST00000313860 MAPK8IP2Q13387 824 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-201ENST00000313860 DDRGK1Q96HY6 314 aa9.87□□□□□ -0.83
LIMCH1-201ENST00000313860 PKNOX2Q96KN3 472 aa9.86□□□□□ -0.83
LIMCH1-201ENST00000313860 MYO15BQ96JP2 1530 aa9.86□□□□□ -0.83
LIMCH1-201ENST00000313860 WWC1Q8IX03 1113 aa9.86□□□□□ -0.83
LIMCH1-201ENST00000313860 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-201ENST00000313860 RBM25P49756 843 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-201ENST00000313860 AK7Q96M32 723 aa9.84□□□□□ -0.83
LIMCH1-201ENST00000313860 AXDND1Q5T1B0 1012 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-201ENST00000313860 LOC105371045A0A1W2PR82 267 aa9.83□□□□□ -0.84
LIMCH1-201ENST00000313860 NAP1L2Q9ULW6 460 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-201ENST00000313860 DYDC1Q8WWB3 177 aa9.83□□□□□ -0.84
LIMCH1-201ENST00000313860 TSPYL1Q9H0U9 437 aa9.82□□□□□ -0.84
LIMCH1-201ENST00000313860 IRX6P78412 446 aaPredicted RBP9.82□□□□□ -0.84
LIMCH1-201ENST00000313860 DCAF1Q9Y4B6 1507 aa9.82□□□□□ -0.84
LIMCH1-201ENST00000313860 CCAR1Q8IX12 1150 aaKnown RBP9.82□□□□□ -0.84
LIMCH1-201ENST00000313860 SEPT11Q9NVA2 429 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-201ENST00000313860 NOM1Q5C9Z4 860 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-201ENST00000313860 TIMELESSQ9UNS1 1208 aa9.8□□□□□ -0.84
LIMCH1-201ENST00000313860 HSP90B1P14625 803 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-201ENST00000313860 MYH16Q9H6N6 1097 aa9.8□□□□□ -0.84
LIMCH1-201ENST00000313860 TRIM52Q96A61 297 aa9.78□□□□□ -0.84
LIMCH1-201ENST00000313860 RDXP35241 583 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-201ENST00000313860 TMX4Q9H1E5 349 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-201ENST00000313860 TEX35Q5T0J7 233 aa9.75□□□□□ -0.85
LIMCH1-201ENST00000313860 CCDC191Q8NCU4 936 aa9.75□□□□□ -0.85
LIMCH1-201ENST00000313860 CLGNO14967 610 aa9.75□□□□□ -0.85
LIMCH1-201ENST00000313860 HMMRO75330 724 aa9.75□□□□□ -0.85
LIMCH1-201ENST00000313860 PPM1GO15355 546 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-201ENST00000313860 CCAR2Q8N163 923 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-201ENST00000313860 NOP58Q9Y2X3 529 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-201ENST00000313860 SPRYD3Q8NCJ5 442 aa9.74□□□□□ -0.85
LIMCH1-201ENST00000313860 AEBP1Q8IUX7 1158 aa9.74□□□□□ -0.85
LIMCH1-201ENST00000313860 CEP89Q96ST8 783 aa9.74□□□□□ -0.85
LIMCH1-201ENST00000313860 CASC1Q6TDU7 716 aa9.73□□□□□ -0.85
LIMCH1-201ENST00000313860 CREBRFQ8IUR6 639 aa9.73□□□□□ -0.85
LIMCH1-201ENST00000313860 ISY1Q9ULR0 285 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-201ENST00000313860 VGFO15240 615 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-201ENST00000313860 HSP90AB1P08238 724 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-201ENST00000313860 FGD1P98174 961 aa9.71□□□□□ -0.85
LIMCH1-201ENST00000313860 CCDC180Q9P1Z9 1646 aa9.71□□□□□ -0.86
LIMCH1-201ENST00000313860 SSR1P43307 286 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-201ENST00000313860 PAF1Q8N7H5 531 aa9.71□□□□□ -0.86
LIMCH1-201ENST00000313860 PHF14O94880 888 aa9.7□□□□□ -0.86
LIMCH1-201ENST00000313860 FAM9BQ8IZU0 186 aa9.7□□□□□ -0.86
LIMCH1-201ENST00000313860 HIRIP3Q9BW71 556 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-201ENST00000313860 TNNT1P13805 278 aa9.69□□□□□ -0.86
LIMCH1-201ENST00000313860 H0YHG0 523 aa9.69□□□□□ -0.86
LIMCH1-201ENST00000313860 GZF1Q9H116 711 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-201ENST00000313860 HNRNPUQ00839 825 aaKnown RBP eCLIP9.68□□□□□ -0.86
LIMCH1-201ENST00000313860 RSPH4AQ5TD94 716 aa9.68□□□□□ -0.86
LIMCH1-201ENST00000313860 GPS2Q13227 327 aa9.68□□□□□ -0.86
LIMCH1-201ENST00000313860 GNL2Q13823 731 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-201ENST00000313860 PPP1R1BQ9UD71 204 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-201ENST00000313860 PLEKHG5O94827 1062 aa9.66□□□□□ -0.86
LIMCH1-201ENST00000313860 FLIIQ13045 1269 aa9.66□□□□□ -0.86
LIMCH1-201ENST00000313860 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.66□□□□□ -0.86
LIMCH1-201ENST00000313860 NEXNQ0ZGT2 675 aa9.65□□□□□ -0.86
LIMCH1-201ENST00000313860 TPM3P06753 285 aa9.65□□□□□ -0.87
LIMCH1-201ENST00000313860 GIMAP7Q8NHV1 300 aa9.64□□□□□ -0.87
LIMCH1-201ENST00000313860 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.64□□□□□ -0.87
LIMCH1-201ENST00000313860 BCL11BQ9C0K0 894 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-201ENST00000313860 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.63□□□□□ -0.87
LIMCH1-201ENST00000313860 RBM28Q9NW13 759 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-201ENST00000313860 CLASRPQ8N2M8 674 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-201ENST00000313860 SKIDA1Q1XH10 827 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms