RNA–Protein interactions for RNA: ENST00000312481.11

COL6A5-202, Transcript of collagen type VI alpha 5 chain, humanhuman

TSL 1 (best)

Gene COL6A5, Length 9,226 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5-202ENST00000312481 ROCK2O75116 1388 aaKnown RBP11.71□□□□□ -0.53
COL6A5-202ENST00000312481 EIF4G2P78344 907 aaKnown RBP eCLIP11.71□□□□□ -0.53
COL6A5-202ENST00000312481 CANXP27824 592 aaKnown RBP11.7□□□□□ -0.54
COL6A5-202ENST00000312481 PPM1GO15355 546 aaPredicted RBP11.69□□□□□ -0.54
COL6A5-202ENST00000312481 KIF21AQ7Z4S6 1674 aa11.67□□□□□ -0.54
COL6A5-202ENST00000312481 EFCAB5A4FU69 1503 aa11.65□□□□□ -0.54
COL6A5-202ENST00000312481 HAP1P54257 671 aaPredicted RBP11.64□□□□□ -0.55
COL6A5-202ENST00000312481 SETD5Q9C0A6 1442 aa11.63□□□□□ -0.55
COL6A5-202ENST00000312481 TMC1Q8TDI8 760 aa11.63□□□□□ -0.55
COL6A5-202ENST00000312481 CCDC136Q96JN2 1154 aa11.62□□□□□ -0.55
COL6A5-202ENST00000312481 GOLGA6L22H0YM25 854 aa11.62□□□□□ -0.55
COL6A5-202ENST00000312481 MROH2BQ7Z745 1585 aa11.62□□□□□ -0.55
COL6A5-202ENST00000312481 NGEFQ8N5V2 710 aa11.62□□□□□ -0.55
COL6A5-202ENST00000312481 PNNQ9H307 717 aaKnown RBP11.62□□□□□ -0.55
COL6A5-202ENST00000312481 TSPY4P0CV99 314 aa11.61□□□□□ -0.55
COL6A5-202ENST00000312481 TSPY10P0CW01 314 aa11.61□□□□□ -0.55
COL6A5-202ENST00000312481 CCDC18Q5T9S5 1454 aa11.61□□□□□ -0.55
COL6A5-202ENST00000312481 CCDC88BA6NC98 1476 aa11.61□□□□□ -0.55
COL6A5-202ENST00000312481 POLR3GLQ9BT43 218 aa11.6□□□□□ -0.55
COL6A5-202ENST00000312481 CUL7Q14999 1698 aa11.6□□□□□ -0.55
COL6A5-202ENST00000312481 KTN1Q86UP2 1357 aaKnown RBP11.6□□□□□ -0.55
COL6A5-202ENST00000312481 HNRNPUQ00839 825 aaKnown RBP eCLIP11.6□□□□□ -0.55
COL6A5-202ENST00000312481 HSP90AA1P07900 732 aaKnown RBP11.58□□□□□ -0.56
COL6A5-202ENST00000312481 HMGXB3Q12766 1538 aa11.58□□□□□ -0.56
COL6A5-202ENST00000312481 CHMP4AQ9BY43 222 aa11.58□□□□□ -0.56
COL6A5-202ENST00000312481 SUPT6HQ7KZ85 1726 aaKnown RBP11.57□□□□□ -0.56
COL6A5-202ENST00000312481 NCLP19338 710 aaKnown RBP11.57□□□□□ -0.56
COL6A5-202ENST00000312481 MYH16Q9H6N6 1097 aa11.57□□□□□ -0.56
COL6A5-202ENST00000312481 MAP3K1Q13233 1512 aa11.57□□□□□ -0.56
COL6A5-202ENST00000312481 PPP4R2Q9NY27 417 aa11.57□□□□□ -0.56
COL6A5-202ENST00000312481 USP35Q9P2H5 1018 aa11.56□□□□□ -0.56
COL6A5-202ENST00000312481 FKBP8Q14318 412 aa11.56□□□□□ -0.56
COL6A5-202ENST00000312481 RSPH4AQ5TD94 716 aa11.56□□□□□ -0.56
COL6A5-202ENST00000312481 WDR43Q15061 677 aaKnown RBP eCLIP11.55□□□□□ -0.56
COL6A5-202ENST00000312481 UNC13AQ9UPW8 1703 aa11.55□□□□□ -0.56
COL6A5-202ENST00000312481 TOP2BQ02880 1626 aa11.55□□□□□ -0.56
COL6A5-202ENST00000312481 TRIM44Q96DX7 344 aaPredicted RBP11.54□□□□□ -0.56
COL6A5-202ENST00000312481 PDS5BQ9NTI5 1447 aa11.54□□□□□ -0.56
COL6A5-202ENST00000312481 TNNT2P45379 298 aaPredicted RBP11.54□□□□□ -0.56
COL6A5-202ENST00000312481 PEG3Q9GZU2 1588 aa11.54□□□□□ -0.56
COL6A5-202ENST00000312481 STAC3Q96MF2 364 aa11.53□□□□□ -0.56
COL6A5-202ENST00000312481 SCAPERQ9BY12 1400 aa11.53□□□□□ -0.56
COL6A5-202ENST00000312481 AAMPQ13685 434 aa11.53□□□□□ -0.56
COL6A5-202ENST00000312481 RAPGEF2Q9Y4G8 1499 aa11.52□□□□□ -0.57
COL6A5-202ENST00000312481 EIF3AQ14152 1382 aaKnown RBP11.52□□□□□ -0.57
COL6A5-202ENST00000312481 CC2D2AQ9P2K1 1620 aa11.51□□□□□ -0.57
COL6A5-202ENST00000312481 CASC1Q6TDU7 716 aa11.51□□□□□ -0.57
COL6A5-202ENST00000312481 MRS2Q9HD23 443 aa11.51□□□□□ -0.57
COL6A5-202ENST00000312481 CARMIL2Q6F5E8 1435 aa11.51□□□□□ -0.57
COL6A5-202ENST00000312481 CFAP53Q96M91 514 aa11.5□□□□□ -0.57
COL6A5-202ENST00000312481 PDE3BQ13370 1112 aa11.49□□□□□ -0.57
COL6A5-202ENST00000312481 SCAF1Q9H7N4 1312 aaKnown RBP11.49□□□□□ -0.57
COL6A5-202ENST00000312481 L1TD1Q5T7N2 865 aaKnown RBP11.49□□□□□ -0.57
COL6A5-202ENST00000312481 FYCO1Q9BQS8 1478 aa11.48□□□□□ -0.57
COL6A5-202ENST00000312481 CARMIL1Q5VZK9 1371 aa11.48□□□□□ -0.57
COL6A5-202ENST00000312481 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.48□□□□□ -0.57
COL6A5-202ENST00000312481 KANK1Q14678 1352 aa11.47□□□□□ -0.57
COL6A5-202ENST00000312481 RALBP1Q15311 655 aa11.47□□□□□ -0.57
COL6A5-202ENST00000312481 PABPN1Q86U42 306 aaKnown RBP eCLIP11.47□□□□□ -0.57
COL6A5-202ENST00000312481 THOC2Q8NI27 1593 aaKnown RBP11.46□□□□□ -0.57
COL6A5-202ENST00000312481 UACAQ9BZF9 1416 aa11.46□□□□□ -0.57
COL6A5-202ENST00000312481 CUX2O14529 1486 aa11.45□□□□□ -0.58
COL6A5-202ENST00000312481 SLC4A1APQ9BWU0 796 aaKnown RBP11.45□□□□□ -0.58
COL6A5-202ENST00000312481 BIVM-ERCC5R4GMW8 1640 aa11.44□□□□□ -0.58
COL6A5-202ENST00000312481 HECW1Q76N89 1606 aa11.44□□□□□ -0.58
COL6A5-202ENST00000312481 DDX10Q13206 875 aaKnown RBP11.43□□□□□ -0.58
COL6A5-202ENST00000312481 CTTNBP2Q8WZ74 1663 aa11.43□□□□□ -0.58
COL6A5-202ENST00000312481 CECR2Q9BXF3 1484 aa11.43□□□□□ -0.58
COL6A5-202ENST00000312481 NRDCO43847 1150 aa11.43□□□□□ -0.58
COL6A5-202ENST00000312481 CALD1Q05682 793 aaKnown RBP11.42□□□□□ -0.58
COL6A5-202ENST00000312481 PLEKHD1A6NEE1 506 aa11.42□□□□□ -0.58
COL6A5-202ENST00000312481 ITSN2Q9NZM3 1697 aa11.41□□□□□ -0.58
COL6A5-202ENST00000312481 KNSTRNQ9Y448 316 aa11.41□□□□□ -0.58
COL6A5-202ENST00000312481 MIER1Q8N108 512 aa11.41□□□□□ -0.58
COL6A5-202ENST00000312481 TCERG1O14776 1098 aaKnown RBP11.4□□□□□ -0.58
COL6A5-202ENST00000312481 EHBP1L1Q8N3D4 1523 aa11.4□□□□□ -0.58
COL6A5-202ENST00000312481 NPM1P06748 294 aaKnown RBP eCLIP11.39□□□□□ -0.59
COL6A5-202ENST00000312481 ATAD2BQ9ULI0 1458 aa11.39□□□□□ -0.59
COL6A5-202ENST00000312481 NOP58Q9Y2X3 529 aaKnown RBP11.39□□□□□ -0.59
COL6A5-202ENST00000312481 GOLGA6L6A8MZA4 724 aa11.38□□□□□ -0.59
COL6A5-202ENST00000312481 ANKRD30AQ9BXX3 1397 aa11.38□□□□□ -0.59
COL6A5-202ENST00000312481 ZNF326Q5BKZ1 582 aaKnown RBP11.38□□□□□ -0.59
COL6A5-202ENST00000312481 HDAC5Q9UQL6 1122 aa11.37□□□□□ -0.59
COL6A5-202ENST00000312481 AQRO60306 1485 aaKnown RBP eCLIP11.37□□□□□ -0.59
COL6A5-202ENST00000312481 MIA2Q96PC5 1412 aa11.36□□□□□ -0.59
COL6A5-202ENST00000312481 NUDCQ9Y266 331 aa11.36□□□□□ -0.59
COL6A5-202ENST00000312481 ESF1Q9H501 851 aaKnown RBP11.35□□□□□ -0.59
COL6A5-202ENST00000312481 CHMP4CQ96CF2 233 aa11.35□□□□□ -0.59
COL6A5-202ENST00000312481 CFDP1Q9UEE9 299 aaPredicted RBP11.34□□□□□ -0.59
COL6A5-202ENST00000312481 IL27Q8NEV9 243 aa11.33□□□□□ -0.59
COL6A5-202ENST00000312481 BCANQ96GW7 911 aa11.33□□□□□ -0.6
COL6A5-202ENST00000312481 CNTLNQ9NXG0 1405 aa11.33□□□□□ -0.6
COL6A5-202ENST00000312481 WASHC2AQ641Q2 1341 aa11.33□□□□□ -0.6
COL6A5-202ENST00000312481 WASHC2CQ9Y4E1 1318 aa11.33□□□□□ -0.6
COL6A5-202ENST00000312481 TIAM1Q13009 1591 aa11.32□□□□□ -0.6
COL6A5-202ENST00000312481 RRBP1Q9P2E9 1410 aaKnown RBP11.32□□□□□ -0.6
COL6A5-202ENST00000312481 CHMP7Q8WUX9 453 aaPredicted RBP11.32□□□□□ -0.6
COL6A5-202ENST00000312481 PLEKHH2Q8IVE3 1493 aa11.32□□□□□ -0.6
COL6A5-202ENST00000312481 TMF1P82094 1093 aa11.32□□□□□ -0.6
COL6A5-202ENST00000312481 NCAPD3P42695 1498 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms