RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 ANP32AP39687 249 aaKnown RBP11.35□□□□□ -0.59
VPS41-202ENST00000310301 SLC4A1APQ9BWU0 796 aaKnown RBP11.35□□□□□ -0.59
VPS41-202ENST00000310301 MRC2Q9UBG0 1479 aa11.32□□□□□ -0.6
VPS41-202ENST00000310301 ANP32CO43423 234 aa11.32□□□□□ -0.6
VPS41-202ENST00000310301 CARMIL1Q5VZK9 1371 aa11.32□□□□□ -0.6
VPS41-202ENST00000310301 HMGXB3Q12766 1538 aa11.32□□□□□ -0.6
VPS41-202ENST00000310301 MTUS2Q5JR59 1369 aa11.29□□□□□ -0.6
VPS41-202ENST00000310301 NPM2Q86SE8 214 aaKnown RBP11.29□□□□□ -0.6
VPS41-202ENST00000310301 NEUROD1Q13562 356 aa11.27□□□□□ -0.61
VPS41-202ENST00000310301 BICRAQ9NZM4 1560 aa11.26□□□□□ -0.61
VPS41-202ENST00000310301 JPH4Q96JJ6 628 aa11.25□□□□□ -0.61
VPS41-202ENST00000310301 WIZO95785 1651 aa11.24□□□□□ -0.61
VPS41-202ENST00000310301 CHGAP10645 457 aaKnown RBP11.23□□□□□ -0.61
VPS41-202ENST00000310301 IFT140Q96RY7 1462 aa11.23□□□□□ -0.61
VPS41-202ENST00000310301 ZBTB47Q9UFB7 747 aaPredicted RBP11.22□□□□□ -0.61
VPS41-202ENST00000310301 FKBP8Q14318 412 aa11.2□□□□□ -0.62
VPS41-202ENST00000310301 CLIP1P30622 1438 aa11.2□□□□□ -0.62
VPS41-202ENST00000310301 ANP32BQ92688 251 aaKnown RBP11.2□□□□□ -0.62
VPS41-202ENST00000310301 LAMC3Q9Y6N6 1575 aa11.2□□□□□ -0.62
VPS41-202ENST00000310301 NBR1Q14596 966 aa11.19□□□□□ -0.62
VPS41-202ENST00000310301 GOLGA3Q08378 1498 aa11.19□□□□□ -0.62
VPS41-202ENST00000310301 CFDP1Q9UEE9 299 aaPredicted RBP11.19□□□□□ -0.62
VPS41-202ENST00000310301 CANXP27824 592 aaKnown RBP11.18□□□□□ -0.62
VPS41-202ENST00000310301 BCL11AQ9H165 835 aa11.18□□□□□ -0.62
VPS41-202ENST00000310301 PPP1R15AO75807 674 aaPredicted RBP11.17□□□□□ -0.62
VPS41-202ENST00000310301 CFTRP13569 1480 aa11.16□□□□□ -0.62
VPS41-202ENST00000310301 GAPVD1Q14C86 1478 aa11.16□□□□□ -0.62
VPS41-202ENST00000310301 PTPRGP23470 1445 aa11.15□□□□□ -0.62
VPS41-202ENST00000310301 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.15□□□□□ -0.621e-6■■■□□ 15.1
VPS41-202ENST00000310301 NESP48681 1621 aa11.15□□□□□ -0.62
VPS41-202ENST00000310301 EFCAB2Q5VUJ9 269 aa11.15□□□□□ -0.63
VPS41-202ENST00000310301 GRIN2BQ13224 1484 aa11.14□□□□□ -0.63
VPS41-202ENST00000310301 SCAF1Q9H7N4 1312 aaKnown RBP11.14□□□□□ -0.63
VPS41-202ENST00000310301 FHAD1B1AJZ9 1412 aa11.14□□□□□ -0.63
VPS41-202ENST00000310301 HDGFP51858 240 aaKnown RBP11.14□□□□□ -0.63
VPS41-202ENST00000310301 C14orf37Q86TY3 774 aa11.13□□□□□ -0.63
VPS41-202ENST00000310301 FAM69CQ0P6D2 419 aa11.11□□□□□ -0.63
VPS41-202ENST00000310301 ZNF326Q5BKZ1 582 aaKnown RBP11.1□□□□□ -0.63
VPS41-202ENST00000310301 FGD5Q6ZNL6 1462 aa11.1□□□□□ -0.63
VPS41-202ENST00000310301 MLECQ14165 292 aa11.09□□□□□ -0.63
VPS41-202ENST00000310301 CCNB3Q8WWL7 1395 aa11.09□□□□□ -0.63
VPS41-202ENST00000310301 AQRO60306 1485 aaKnown RBP eCLIP11.08□□□□□ -0.646e-6■■■■□ 25.1
VPS41-202ENST00000310301 RAPGEF2Q9Y4G8 1499 aa11.08□□□□□ -0.64
VPS41-202ENST00000310301 ARXQ96QS3 562 aa11.07□□□□□ -0.64
VPS41-202ENST00000310301 HSP90AA1P07900 732 aaKnown RBP11.06□□□□□ -0.64
VPS41-202ENST00000310301 KANK1Q14678 1352 aa11.06□□□□□ -0.64
VPS41-202ENST00000310301 FMN1Q68DA7 1419 aa11.05□□□□□ -0.64
VPS41-202ENST00000310301 CHIC2Q9UKJ5 165 aa11.03□□□□□ -0.64
VPS41-202ENST00000310301 RAD54L2Q9Y4B4 1467 aa11.03□□□□□ -0.64
VPS41-202ENST00000310301 TOPBP1Q92547 1522 aa11.02□□□□□ -0.65
VPS41-202ENST00000310301 UPF2Q9HAU5 1272 aaKnown RBP11.02□□□□□ -0.65
VPS41-202ENST00000310301 ANP32EQ9BTT0 268 aa11.01□□□□□ -0.65
VPS41-202ENST00000310301 TNIKQ9UKE5 1360 aa11□□□□□ -0.65
VPS41-202ENST00000310301 HNRNPUQ00839 825 aaKnown RBP eCLIP11□□□□□ -0.65
VPS41-202ENST00000310301 RSPH4AQ5TD94 716 aa11□□□□□ -0.65
VPS41-202ENST00000310301 DNMBPQ6XZF7 1577 aa10.98□□□□□ -0.65
VPS41-202ENST00000310301 SLC24A1O60721 1099 aa10.98□□□□□ -0.65
VPS41-202ENST00000310301 HAP1P54257 671 aaPredicted RBP10.98□□□□□ -0.65
VPS41-202ENST00000310301 CCDC136Q96JN2 1154 aa10.97□□□□□ -0.65
VPS41-202ENST00000310301 NEFMP07197 916 aa10.97□□□□□ -0.65
VPS41-202ENST00000310301 UNC13AQ9UPW8 1703 aa10.97□□□□□ -0.65
VPS41-202ENST00000310301 PRG4Q92954 1404 aaPredicted RBP10.96□□□□□ -0.66
VPS41-202ENST00000310301 GGT6Q6P531 493 aa10.96□□□□□ -0.66
VPS41-202ENST00000310301 SNAPC4Q5SXM2 1469 aa10.94□□□□□ -0.66
VPS41-202ENST00000310301 FAM9BQ8IZU0 186 aa10.94□□□□□ -0.66
VPS41-202ENST00000310301 SPAG9O60271 1321 aaKnown RBP10.93□□□□□ -0.66
VPS41-202ENST00000310301 POLA1P09884 1462 aaPredicted RBP10.93□□□□□ -0.66
VPS41-202ENST00000310301 EID1Q9Y6B2 187 aa10.92□□□□□ -0.66
VPS41-202ENST00000310301 MAGI1Q96QZ7 1491 aaPredicted RBP10.92□□□□□ -0.66
VPS41-202ENST00000310301 PEG3Q9GZU2 1588 aa10.92□□□□□ -0.66
VPS41-202ENST00000310301 TNNT2P45379 298 aaPredicted RBP10.91□□□□□ -0.66
VPS41-202ENST00000310301 DDX10Q13206 875 aaKnown RBP10.91□□□□□ -0.66
VPS41-202ENST00000310301 IRX6P78412 446 aaPredicted RBP10.91□□□□□ -0.66
VPS41-202ENST00000310301 CEP162Q5TB80 1403 aa10.91□□□□□ -0.66
VPS41-202ENST00000310301 IGF1RP08069 1367 aa10.9□□□□□ -0.66
VPS41-202ENST00000310301 SYNJ1O43426 1573 aa10.9□□□□□ -0.66
VPS41-202ENST00000310301 RTN4Q9NQC3 1192 aaKnown RBP10.9□□□□□ -0.66
VPS41-202ENST00000310301 CCDC18Q5T9S5 1454 aa10.9□□□□□ -0.67
VPS41-202ENST00000310301 SYNJ2O15056 1496 aa10.89□□□□□ -0.67
VPS41-202ENST00000310301 TRIM44Q96DX7 344 aaPredicted RBP10.89□□□□□ -0.67
VPS41-202ENST00000310301 RRP7BPQ9NSQ0 103 aa10.88□□□□□ -0.67
VPS41-202ENST00000310301 SALL2Q9Y467 1007 aaPredicted RBP10.88□□□□□ -0.67
VPS41-202ENST00000310301 MIER1Q8N108 512 aa10.86□□□□□ -0.67
VPS41-202ENST00000310301 POGZQ7Z3K3 1410 aa10.85□□□□□ -0.67
VPS41-202ENST00000310301 DDRGK1Q96HY6 314 aa10.85□□□□□ -0.67
VPS41-202ENST00000310301 WASHC2CQ9Y4E1 1318 aa10.84□□□□□ -0.67
VPS41-202ENST00000310301 NAP1L5Q96NT1 182 aaPredicted RBP10.84□□□□□ -0.67
VPS41-202ENST00000310301 KIF3BO15066 747 aa10.84□□□□□ -0.67
VPS41-202ENST00000310301 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.83□□□□□ -0.68
VPS41-202ENST00000310301 ERICH6BQ5W0A0 696 aa10.82□□□□□ -0.68
VPS41-202ENST00000310301 TONSLQ96HA7 1378 aa10.82□□□□□ -0.68
VPS41-202ENST00000310301 FHOD3Q2V2M9 1422 aa10.82□□□□□ -0.68
VPS41-202ENST00000310301 ANKRD30AQ9BXX3 1397 aa10.81□□□□□ -0.68
VPS41-202ENST00000310301 POGKQ9P215 609 aa10.8□□□□□ -0.68
VPS41-202ENST00000310301 ABCA10Q8WWZ4 1543 aa10.8□□□□□ -0.68
VPS41-202ENST00000310301 KIAA0586Q9BVV6 1533 aa10.8□□□□□ -0.68
VPS41-202ENST00000310301 URB2Q14146 1524 aaKnown RBP10.79□□□□□ -0.68
VPS41-202ENST00000310301 BECN1Q14457 450 aa10.79□□□□□ -0.68
VPS41-202ENST00000310301 DNAJC5Q9H3Z4 198 aa10.79□□□□□ -0.68
VPS41-202ENST00000310301 TMC1Q8TDI8 760 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 289.6 ms