RNA–Protein interactions for RNA: ENST00000297689.3

NFIL3-201, Transcript of nuclear factor, interleukin 3 regulated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NFIL3, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFIL3-201ENST00000297689 TDRD9Q8NDG6 1382 aaKnown RBP29.58■■■□□ 2.33
NFIL3-201ENST00000297689 THOC2Q8NI27 1593 aaKnown RBP29.58■■■□□ 2.33
NFIL3-201ENST00000297689 GAPVD1Q14C86 1478 aa29.54■■■□□ 2.32
NFIL3-201ENST00000297689 MAP3K1Q13233 1512 aa29.53■■■□□ 2.32
NFIL3-201ENST00000297689 ZNF316A6NFI3 1004 aaPredicted RBP29.52■■■□□ 2.32
NFIL3-201ENST00000297689 CLSPNQ9HAW4 1339 aa29.46■■■□□ 2.31
NFIL3-201ENST00000297689 CTTNBP2Q8WZ74 1663 aa29.45■■■□□ 2.31
NFIL3-201ENST00000297689 TIAM1Q13009 1591 aa29.42■■■□□ 2.3
NFIL3-201ENST00000297689 DHX57Q6P158 1386 aaKnown RBP29.41■■■□□ 2.3
NFIL3-201ENST00000297689 CCNB3Q8WWL7 1395 aa29.39■■■□□ 2.3
NFIL3-201ENST00000297689 IFT140Q96RY7 1462 aa29.37■■■□□ 2.29
NFIL3-201ENST00000297689 PBRM1Q86U86 1689 aa29.36■■■□□ 2.29
NFIL3-201ENST00000297689 SCAF1Q9H7N4 1312 aaKnown RBP29.36■■■□□ 2.29
NFIL3-201ENST00000297689 FHAD1B1AJZ9 1412 aa29.31■■■□□ 2.28
NFIL3-201ENST00000297689 EFCAB5A4FU69 1503 aa29.31■■■□□ 2.28
NFIL3-201ENST00000297689 AQRO60306 1485 aaKnown RBP eCLIP29.31■■■□□ 2.285e-8■□□□□ 10.6
NFIL3-201ENST00000297689 LRRC9Q6ZRR7 1453 aa29.29■■■□□ 2.28
NFIL3-201ENST00000297689 P3H3Q8IVL6 736 aa29.29■■■□□ 2.28
NFIL3-201ENST00000297689 ZNF608Q9ULD9 1512 aaPredicted RBP29.27■■■□□ 2.28
NFIL3-201ENST00000297689 FHOD3Q2V2M9 1422 aa29.27■■■□□ 2.28
NFIL3-201ENST00000297689 PCF11O94913 1555 aaKnown RBP29.25■■■□□ 2.27
NFIL3-201ENST00000297689 CFAP43Q8NDM7 1665 aa29.25■■■□□ 2.27
NFIL3-201ENST00000297689 ACIN1Q9UKV3 1341 aaKnown RBP29.23■■■□□ 2.27
NFIL3-201ENST00000297689 ADAMTS12P58397 1594 aa29.21■■■□□ 2.27
NFIL3-201ENST00000297689 SAMD9Q5K651 1589 aa29.19■■■□□ 2.26
NFIL3-201ENST00000297689 GRIN2BQ13224 1484 aa29.18■■■□□ 2.26
NFIL3-201ENST00000297689 NEUROD1Q13562 356 aa29.16■■■□□ 2.26
NFIL3-201ENST00000297689 PHLDB1Q86UU1 1377 aa29.15■■■□□ 2.26
NFIL3-201ENST00000297689 FYCO1Q9BQS8 1478 aa29.15■■■□□ 2.26
NFIL3-201ENST00000297689 CASKIN1Q8WXD9 1431 aa29.13■■■□□ 2.25
NFIL3-201ENST00000297689 EIF4G3O43432 1585 aaKnown RBP29.12■■■□□ 2.25
NFIL3-201ENST00000297689 SNAPC4Q5SXM2 1469 aa29.06■■■□□ 2.24
NFIL3-201ENST00000297689 FMN1Q68DA7 1419 aa29.05■■■□□ 2.24
NFIL3-201ENST00000297689 RAB3GAP2Q9H2M9 1393 aa29.05■■■□□ 2.24
NFIL3-201ENST00000297689 CENPBP07199 599 aaPredicted RBP29.05■■■□□ 2.24
NFIL3-201ENST00000297689 IQGAP2Q13576 1575 aa29■■■□□ 2.23
NFIL3-201ENST00000297689 MIER1Q8N108 512 aa29■■■□□ 2.23
NFIL3-201ENST00000297689 ATP1B4Q9UN42 357 aaPredicted RBP29■■■□□ 2.23
NFIL3-201ENST00000297689 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29■■■□□ 2.23
NFIL3-201ENST00000297689 SETD5Q9C0A6 1442 aa28.99■■■□□ 2.23
NFIL3-201ENST00000297689 MAPKBP1O60336 1514 aa28.98■■■□□ 2.23
NFIL3-201ENST00000297689 ITGAEP38570 1179 aa28.98■■■□□ 2.23
NFIL3-201ENST00000297689 LRRIQ1Q96JM4 1722 aa28.96■■■□□ 2.23
NFIL3-201ENST00000297689 MAGI1Q96QZ7 1491 aaPredicted RBP28.89■■■□□ 2.22
NFIL3-201ENST00000297689 GRIN2AQ12879 1464 aa28.87■■■□□ 2.21
NFIL3-201ENST00000297689 UGGT2Q9NYU1 1516 aa28.87■■■□□ 2.21
NFIL3-201ENST00000297689 FAM50AQ14320 339 aaKnown RBP28.84■■■□□ 2.21
NFIL3-201ENST00000297689 KIAA0586Q9BVV6 1533 aa28.83■■■□□ 2.2
NFIL3-201ENST00000297689 FGD6Q6ZV73 1430 aa28.8■■■□□ 2.2
NFIL3-201ENST00000297689 SYNJ2O15056 1496 aa28.79■■■□□ 2.2
NFIL3-201ENST00000297689 GTF3C3Q9Y5Q9 886 aa28.78■■■□□ 2.2
NFIL3-201ENST00000297689 DISP1Q96F81 1524 aa28.74■■■□□ 2.19
NFIL3-201ENST00000297689 CEP170Q5SW79 1584 aa28.73■■■□□ 2.19
NFIL3-201ENST00000297689 CHMP7Q8WUX9 453 aaPredicted RBP28.73■■■□□ 2.19
NFIL3-201ENST00000297689 MTUS2Q5JR59 1369 aa28.72■■■□□ 2.19
NFIL3-201ENST00000297689 KIAA0556O60303 1618 aa28.72■■■□□ 2.19
NFIL3-201ENST00000297689 HECW1Q76N89 1606 aa28.71■■■□□ 2.19
NFIL3-201ENST00000297689 MAGI3Q5TCQ9 1506 aa28.7■■■□□ 2.18
NFIL3-201ENST00000297689 CCDC18Q5T9S5 1454 aa28.68■■■□□ 2.18
NFIL3-201ENST00000297689 NCOA2Q15596 1464 aa28.68■■■□□ 2.18
NFIL3-201ENST00000297689 ARHGEF11O15085 1522 aa28.68■■■□□ 2.18
NFIL3-201ENST00000297689 EHBP1L1Q8N3D4 1523 aa28.67■■■□□ 2.18
NFIL3-201ENST00000297689 MYOM3Q5VTT5 1437 aa28.65■■■□□ 2.18
NFIL3-201ENST00000297689 FBLN2P98095 1184 aa28.65■■■□□ 2.18
NFIL3-201ENST00000297689 TIMELESSQ9UNS1 1208 aa28.65■■■□□ 2.18
NFIL3-201ENST00000297689 PTPRKQ15262 1439 aa28.64■■■□□ 2.18
NFIL3-201ENST00000297689 EPRSP07814 1512 aaKnown RBP28.64■■■□□ 2.18
NFIL3-201ENST00000297689 YTHDC1Q96MU7 727 aaKnown RBP28.64■■■□□ 2.18
NFIL3-201ENST00000297689 SUPT6HQ7KZ85 1726 aaKnown RBP28.64■■■□□ 2.17
NFIL3-201ENST00000297689 NUP160Q12769 1436 aa28.62■■■□□ 2.17
NFIL3-201ENST00000297689 HFM1A2PYH4 1435 aa28.62■■■□□ 2.17
NFIL3-201ENST00000297689 CDK13Q14004 1512 aaKnown RBP28.59■■■□□ 2.17
NFIL3-201ENST00000297689 SIN3AQ96ST3 1273 aa28.59■■■□□ 2.17
NFIL3-201ENST00000297689 PTPN23Q9H3S7 1636 aa28.55■■■□□ 2.16
NFIL3-201ENST00000297689 CHD1O14646 1710 aa28.52■■■□□ 2.16
NFIL3-201ENST00000297689 NAIPQ13075 1403 aa28.52■■■□□ 2.16
NFIL3-201ENST00000297689 RAPGEF6Q8TEU7 1601 aa28.51■■■□□ 2.15
NFIL3-201ENST00000297689 PELP1Q8IZL8 1130 aaKnown RBP28.51■■■□□ 2.15
NFIL3-201ENST00000297689 TCOF1Q13428 1488 aaKnown RBP28.51■■■□□ 2.15
NFIL3-201ENST00000297689 UACAQ9BZF9 1416 aa28.51■■■□□ 2.15
NFIL3-201ENST00000297689 NUP153P49790 1475 aaKnown RBP28.5■■■□□ 2.15
NFIL3-201ENST00000297689 ARID3CA6NKF2 412 aa28.47■■■□□ 2.15
NFIL3-201ENST00000297689 JPH4Q96JJ6 628 aa28.46■■■□□ 2.15
NFIL3-201ENST00000297689 PPP1R15AO75807 674 aaPredicted RBP28.45■■■□□ 2.14
NFIL3-201ENST00000297689 CARMIL2Q6F5E8 1435 aa28.39■■■□□ 2.14
NFIL3-201ENST00000297689 MIA2Q96PC5 1412 aa28.38■■■□□ 2.13
NFIL3-201ENST00000297689 PLB1Q6P1J6 1458 aa28.38■■■□□ 2.13
NFIL3-201ENST00000297689 AKNAQ7Z591 1439 aa28.37■■■□□ 2.13
NFIL3-201ENST00000297689 GCC2Q8IWJ2 1684 aa28.33■■■□□ 2.13
NFIL3-201ENST00000297689 ABCA8O94911 1581 aa28.27■■■□□ 2.12
NFIL3-201ENST00000297689 KDM5BQ9UGL1 1544 aa28.27■■■□□ 2.12
NFIL3-201ENST00000297689 DENND4BO75064 1496 aaPredicted RBP28.26■■■□□ 2.11
NFIL3-201ENST00000297689 TONSLQ96HA7 1378 aa28.24■■■□□ 2.11
NFIL3-201ENST00000297689 PRG4Q92954 1404 aaPredicted RBP28.24■■■□□ 2.11
NFIL3-201ENST00000297689 TROQ12816 1431 aaPredicted RBP28.22■■■□□ 2.11
NFIL3-201ENST00000297689 CLASP1Q7Z460 1538 aa28.22■■■□□ 2.11
NFIL3-201ENST00000297689 SHROOM2Q13796 1616 aa28.22■■■□□ 2.11
NFIL3-201ENST00000297689 CDK11AQ9UQ88 783 aaPredicted RBP28.21■■■□□ 2.11
NFIL3-201ENST00000297689 KDM6BO15054 1643 aa28.19■■■□□ 2.1
NFIL3-201ENST00000297689 RRP7BPQ9NSQ0 103 aa28.19■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms