RNA–Protein interactions for RNA: ENST00000296682.3

PRDM9-201, Transcript of PR/SET domain 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRDM9, Length 3,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM9-201ENST00000296682 YTHDC1Q96MU7 727 aaKnown RBP13.89□□□□□ -0.19
PRDM9-201ENST00000296682 DNAJC5BQ9UF47 199 aa13.87□□□□□ -0.19
PRDM9-201ENST00000296682 LRRIQ1Q96JM4 1722 aa13.87□□□□□ -0.19
PRDM9-201ENST00000296682 PBRM1Q86U86 1689 aa13.87□□□□□ -0.19
PRDM9-201ENST00000296682 ARID3CA6NKF2 412 aa13.87□□□□□ -0.19
PRDM9-201ENST00000296682 THOC2Q8NI27 1593 aaKnown RBP13.87□□□□□ -0.19
PRDM9-201ENST00000296682 FAM50AQ14320 339 aaKnown RBP13.83□□□□□ -0.2
PRDM9-201ENST00000296682 DIEXFQ68CQ4 756 aaKnown RBP13.83□□□□□ -0.2
PRDM9-201ENST00000296682 KANK4Q5T7N3 995 aaPredicted RBP13.83□□□□□ -0.2
PRDM9-201ENST00000296682 NESP48681 1621 aa13.82□□□□□ -0.2
PRDM9-201ENST00000296682 FYCO1Q9BQS8 1478 aa13.8□□□□□ -0.2
PRDM9-201ENST00000296682 PCF11O94913 1555 aaKnown RBP13.8□□□□□ -0.2
PRDM9-201ENST00000296682 CARMIL1Q5VZK9 1371 aa13.79□□□□□ -0.2
PRDM9-201ENST00000296682 SNAPC4Q5SXM2 1469 aa13.78□□□□□ -0.2
PRDM9-201ENST00000296682 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.78□□□□□ -0.2
PRDM9-201ENST00000296682 WDR62O43379 1518 aa13.78□□□□□ -0.2
PRDM9-201ENST00000296682 CLSPNQ9HAW4 1339 aa13.77□□□□□ -0.21
PRDM9-201ENST00000296682 PDS5BQ9NTI5 1447 aa13.76□□□□□ -0.21
PRDM9-201ENST00000296682 ARHGEF11O15085 1522 aa13.75□□□□□ -0.21
PRDM9-201ENST00000296682 ADAMTS12P58397 1594 aa13.75□□□□□ -0.21
PRDM9-201ENST00000296682 LRRC9Q6ZRR7 1453 aa13.74□□□□□ -0.21
PRDM9-201ENST00000296682 RAD54L2Q9Y4B4 1467 aa13.74□□□□□ -0.21
PRDM9-201ENST00000296682 CASKIN1Q8WXD9 1431 aa13.73□□□□□ -0.21
PRDM9-201ENST00000296682 FHAD1B1AJZ9 1412 aa13.73□□□□□ -0.21
PRDM9-201ENST00000296682 FBLN2P98095 1184 aa13.7□□□□□ -0.22
PRDM9-201ENST00000296682 NEUROD1Q13562 356 aa13.7□□□□□ -0.22
PRDM9-201ENST00000296682 GRIN2BQ13224 1484 aa13.69□□□□□ -0.22
PRDM9-201ENST00000296682 TDRD9Q8NDG6 1382 aaKnown RBP13.67□□□□□ -0.22
PRDM9-201ENST00000296682 GAPVD1Q14C86 1478 aa13.67□□□□□ -0.22
PRDM9-201ENST00000296682 MRC2Q9UBG0 1479 aa13.67□□□□□ -0.22
PRDM9-201ENST00000296682 ZNF316A6NFI3 1004 aaPredicted RBP13.66□□□□□ -0.22
PRDM9-201ENST00000296682 UGGT2Q9NYU1 1516 aa13.65□□□□□ -0.22
PRDM9-201ENST00000296682 DHX57Q6P158 1386 aaKnown RBP13.61□□□□□ -0.23
PRDM9-201ENST00000296682 FMN1Q68DA7 1419 aa13.6□□□□□ -0.23
PRDM9-201ENST00000296682 CCNB3Q8WWL7 1395 aa13.6□□□□□ -0.23
PRDM9-201ENST00000296682 MAPKBP1O60336 1514 aa13.6□□□□□ -0.23
PRDM9-201ENST00000296682 IFT140Q96RY7 1462 aa13.59□□□□□ -0.23
PRDM9-201ENST00000296682 IQGAP2Q13576 1575 aa13.59□□□□□ -0.23
PRDM9-201ENST00000296682 SUPT6HQ7KZ85 1726 aaKnown RBP13.58□□□□□ -0.24
PRDM9-201ENST00000296682 GCC2Q8IWJ2 1684 aa13.57□□□□□ -0.24
PRDM9-201ENST00000296682 EHBP1L1Q8N3D4 1523 aa13.57□□□□□ -0.24
PRDM9-201ENST00000296682 TCOF1Q13428 1488 aaKnown RBP13.57□□□□□ -0.24
PRDM9-201ENST00000296682 CENPBP07199 599 aaPredicted RBP13.57□□□□□ -0.24
PRDM9-201ENST00000296682 HECW1Q76N89 1606 aa13.56□□□□□ -0.24
PRDM9-201ENST00000296682 HIRIP3Q9BW71 556 aaPredicted RBP13.55□□□□□ -0.24
PRDM9-201ENST00000296682 CCDC18Q5T9S5 1454 aa13.55□□□□□ -0.24
PRDM9-201ENST00000296682 CHIC2Q9UKJ5 165 aa13.55□□□□□ -0.24
PRDM9-201ENST00000296682 EIF4G3O43432 1585 aaKnown RBP13.54□□□□□ -0.24
PRDM9-201ENST00000296682 ADCY10Q96PN6 1610 aa13.54□□□□□ -0.24
PRDM9-201ENST00000296682 MIER1Q8N108 512 aa13.54□□□□□ -0.24
PRDM9-201ENST00000296682 PHLDB1Q86UU1 1377 aa13.52□□□□□ -0.24
PRDM9-201ENST00000296682 MAGI3Q5TCQ9 1506 aa13.52□□□□□ -0.25
PRDM9-201ENST00000296682 KIAA0556O60303 1618 aa13.51□□□□□ -0.25
PRDM9-201ENST00000296682 FHOD3Q2V2M9 1422 aa13.51□□□□□ -0.25
PRDM9-201ENST00000296682 AKNAQ7Z591 1439 aa13.5□□□□□ -0.25
PRDM9-201ENST00000296682 SIN3AQ96ST3 1273 aa13.5□□□□□ -0.25
PRDM9-201ENST00000296682 SCAF1Q9H7N4 1312 aaKnown RBP13.5□□□□□ -0.25
PRDM9-201ENST00000296682 TRIM52Q96A61 297 aa13.49□□□□□ -0.25
PRDM9-201ENST00000296682 GTF3C3Q9Y5Q9 886 aa13.48□□□□□ -0.25
PRDM9-201ENST00000296682 DISP1Q96F81 1524 aa13.47□□□□□ -0.25
PRDM9-201ENST00000296682 MAGI1Q96QZ7 1491 aaPredicted RBP13.47□□□□□ -0.25
PRDM9-201ENST00000296682 PTPN23Q9H3S7 1636 aa13.46□□□□□ -0.25
PRDM9-201ENST00000296682 CNGB1Q14028 1251 aaPredicted RBP13.46□□□□□ -0.25
PRDM9-201ENST00000296682 KIAA0586Q9BVV6 1533 aa13.45□□□□□ -0.26
PRDM9-201ENST00000296682 MTUS2Q5JR59 1369 aa13.45□□□□□ -0.26
PRDM9-201ENST00000296682 FGD6Q6ZV73 1430 aa13.45□□□□□ -0.26
PRDM9-201ENST00000296682 RRP7BPQ9NSQ0 103 aa13.44□□□□□ -0.26
PRDM9-201ENST00000296682 ACIN1Q9UKV3 1341 aaKnown RBP13.44□□□□□ -0.26
PRDM9-201ENST00000296682 SETD5Q9C0A6 1442 aa13.43□□□□□ -0.26
PRDM9-201ENST00000296682 ZNF777Q9ULD5 760 aaPredicted RBP13.43□□□□□ -0.26
PRDM9-201ENST00000296682 HFM1A2PYH4 1435 aa13.42□□□□□ -0.26
PRDM9-201ENST00000296682 CROCC2H7BZ55 1655 aa13.42□□□□□ -0.26
PRDM9-201ENST00000296682 CEP170Q5SW79 1584 aa13.42□□□□□ -0.26
PRDM9-201ENST00000296682 RAPGEF6Q8TEU7 1601 aa13.41□□□□□ -0.26
PRDM9-201ENST00000296682 GRIN2AQ12879 1464 aa13.41□□□□□ -0.26
PRDM9-201ENST00000296682 KDM5BQ9UGL1 1544 aa13.41□□□□□ -0.26
PRDM9-201ENST00000296682 EPRSP07814 1512 aaKnown RBP13.41□□□□□ -0.26
PRDM9-201ENST00000296682 NCOA2Q15596 1464 aa13.41□□□□□ -0.26
PRDM9-201ENST00000296682 MYOM3Q5VTT5 1437 aa13.4□□□□□ -0.26
PRDM9-201ENST00000296682 NUP160Q12769 1436 aa13.4□□□□□ -0.26
PRDM9-201ENST00000296682 CHMP7Q8WUX9 453 aaPredicted RBP13.4□□□□□ -0.27
PRDM9-201ENST00000296682 MIA2Q96PC5 1412 aa13.39□□□□□ -0.27
PRDM9-201ENST00000296682 RAB3GAP2Q9H2M9 1393 aa13.39□□□□□ -0.27
PRDM9-201ENST00000296682 ZNF608Q9ULD9 1512 aaPredicted RBP13.39□□□□□ -0.27
PRDM9-201ENST00000296682 DNMT1P26358 1616 aaKnown RBP13.38□□□□□ -0.27
PRDM9-201ENST00000296682 SHROOM2Q13796 1616 aa13.38□□□□□ -0.27
PRDM9-201ENST00000296682 DDX10Q13206 875 aaKnown RBP13.37□□□□□ -0.27
PRDM9-201ENST00000296682 TIMELESSQ9UNS1 1208 aa13.36□□□□□ -0.27
PRDM9-201ENST00000296682 ADGBQ8N7X0 1667 aa13.36□□□□□ -0.27
PRDM9-201ENST00000296682 ITSN2Q9NZM3 1697 aa13.36□□□□□ -0.27
PRDM9-201ENST00000296682 SYNJ2O15056 1496 aa13.36□□□□□ -0.27
PRDM9-201ENST00000296682 PTPRKQ15262 1439 aa13.35□□□□□ -0.27
PRDM9-201ENST00000296682 ABCA8O94911 1581 aa13.34□□□□□ -0.27
PRDM9-201ENST00000296682 POLR3GLQ9BT43 218 aa13.34□□□□□ -0.27
PRDM9-201ENST00000296682 DENND4BO75064 1496 aaPredicted RBP13.34□□□□□ -0.27
PRDM9-201ENST00000296682 NUP153P49790 1475 aaKnown RBP13.32□□□□□ -0.28
PRDM9-201ENST00000296682 NAIPQ13075 1403 aa13.32□□□□□ -0.28
PRDM9-201ENST00000296682 POLR1AO95602 1720 aaPredicted RBP13.31□□□□□ -0.28
PRDM9-201ENST00000296682 UACAQ9BZF9 1416 aa13.31□□□□□ -0.28
PRDM9-201ENST00000296682 ERCC6Q03468 1493 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms