RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 VPS8Q8N3P4 1428 aa14.05□□□□□ -0.16
CLDN1-201ENST00000295522 SENP3-EIF4A1A0A087X0R7 540 aa14.04□□□□□ -0.16
CLDN1-201ENST00000295522 PPP4R2Q9NY27 417 aa14.04□□□□□ -0.16
CLDN1-201ENST00000295522 FAM50AQ14320 339 aaKnown RBP14.03□□□□□ -0.16
CLDN1-201ENST00000295522 FAM9BQ8IZU0 186 aa14.03□□□□□ -0.16
CLDN1-201ENST00000295522 ATP1B4Q9UN42 357 aaPredicted RBP14.03□□□□□ -0.16
CLDN1-201ENST00000295522 LAS1LQ9Y4W2 734 aaKnown RBP14.02□□□□□ -0.17
CLDN1-201ENST00000295522 CCER2I3L3R5 266 aa14□□□□□ -0.17
CLDN1-201ENST00000295522 EEA1Q15075 1411 aa13.98□□□□□ -0.17
CLDN1-201ENST00000295522 PPP1R15AO75807 674 aaPredicted RBP13.98□□□□□ -0.17
CLDN1-201ENST00000295522 ERICH6BQ5W0A0 696 aa13.98□□□□□ -0.17
CLDN1-201ENST00000295522 BAZ1BQ9UIG0 1483 aaKnown RBP13.96□□□□□ -0.17
CLDN1-201ENST00000295522 BAZ1AQ9NRL2 1556 aaPredicted RBP13.96□□□□□ -0.17
CLDN1-201ENST00000295522 CEP164Q9UPV0 1460 aa13.94□□□□□ -0.18
CLDN1-201ENST00000295522 NEFMP07197 916 aa13.94□□□□□ -0.18
CLDN1-201ENST00000295522 RAB3GAP2Q9H2M9 1393 aa13.93□□□□□ -0.18
CLDN1-201ENST00000295522 IPO9Q96P70 1041 aaKnown RBP13.9□□□□□ -0.18
CLDN1-201ENST00000295522 SMARCA4P51532 1647 aa13.89□□□□□ -0.19
CLDN1-201ENST00000295522 CCNB3Q8WWL7 1395 aa13.89□□□□□ -0.19
CLDN1-201ENST00000295522 POLR3GLQ9BT43 218 aa13.87□□□□□ -0.19
CLDN1-201ENST00000295522 WDR97A6NE52 1622 aa13.87□□□□□ -0.19
CLDN1-201ENST00000295522 RAPGEF2Q9Y4G8 1499 aa13.87□□□□□ -0.19
CLDN1-201ENST00000295522 MRS2Q9HD23 443 aa13.86□□□□□ -0.19
CLDN1-201ENST00000295522 TONSLQ96HA7 1378 aa13.85□□□□□ -0.19
CLDN1-201ENST00000295522 BRPF3Q9ULD4 1205 aa13.85□□□□□ -0.19
CLDN1-201ENST00000295522 UBE2Q2Q8WVN8 375 aa13.84□□□□□ -0.19
CLDN1-201ENST00000295522 TOP2AP11388 1531 aaKnown RBP13.84□□□□□ -0.19
CLDN1-201ENST00000295522 TIMELESSQ9UNS1 1208 aa13.83□□□□□ -0.2
CLDN1-201ENST00000295522 CCDC184Q52MB2 194 aa13.81□□□□□ -0.2
CLDN1-201ENST00000295522 SMARCA2P51531 1590 aa13.81□□□□□ -0.2
CLDN1-201ENST00000295522 EIF4G1Q04637 1599 aaKnown RBP13.8□□□□□ -0.2
CLDN1-201ENST00000295522 P3H3Q8IVL6 736 aa13.8□□□□□ -0.2
CLDN1-201ENST00000295522 KIF21BO75037 1637 aa13.8□□□□□ -0.2
CLDN1-201ENST00000295522 DAXXQ9UER7 740 aaPredicted RBP13.78□□□□□ -0.2
CLDN1-201ENST00000295522 DNAJC5BQ9UF47 199 aa13.76□□□□□ -0.21
CLDN1-201ENST00000295522 ATAD2BQ9ULI0 1458 aa13.75□□□□□ -0.21
CLDN1-201ENST00000295522 SETD5Q9C0A6 1442 aa13.75□□□□□ -0.21
CLDN1-201ENST00000295522 ARXQ96QS3 562 aa13.71□□□□□ -0.22
CLDN1-201ENST00000295522 MAPKBP1O60336 1514 aa13.71□□□□□ -0.22
CLDN1-201ENST00000295522 SLC4A3P48751 1232 aa13.69□□□□□ -0.22
CLDN1-201ENST00000295522 RRBP1Q9P2E9 1410 aaKnown RBP13.69□□□□□ -0.22
CLDN1-201ENST00000295522 HSPA5P11021 654 aaKnown RBP13.68□□□□□ -0.22
CLDN1-201ENST00000295522 AKNAQ7Z591 1439 aa13.68□□□□□ -0.22
CLDN1-201ENST00000295522 PKNOX2Q96KN3 472 aa13.68□□□□□ -0.22
CLDN1-201ENST00000295522 PPM1GO15355 546 aaPredicted RBP13.67□□□□□ -0.22
CLDN1-201ENST00000295522 CC2D2AQ9P2K1 1620 aa13.66□□□□□ -0.22
CLDN1-201ENST00000295522 GSE1Q14687 1217 aa13.65□□□□□ -0.22
CLDN1-201ENST00000295522 WASHC2AQ641Q2 1341 aa13.64□□□□□ -0.23
CLDN1-201ENST00000295522 ZBED9Q6R2W3 1325 aa13.63□□□□□ -0.23
CLDN1-201ENST00000295522 EIF4G2P78344 907 aaKnown RBP eCLIP13.63□□□□□ -0.23
CLDN1-201ENST00000295522 SYNJ1O43426 1573 aa13.63□□□□□ -0.23
CLDN1-201ENST00000295522 ARAP1Q96P48 1450 aa13.63□□□□□ -0.23
CLDN1-201ENST00000295522 FRAT1Q92837 279 aaPredicted RBP13.62□□□□□ -0.23
CLDN1-201ENST00000295522 PDE4AP27815 886 aa13.61□□□□□ -0.23
CLDN1-201ENST00000295522 PRKRIP1Q9H875 184 aaPredicted RBP13.61□□□□□ -0.23
CLDN1-201ENST00000295522 USP35Q9P2H5 1018 aa13.61□□□□□ -0.23
CLDN1-201ENST00000295522 VSIG10Q8N0Z9 540 aa13.6□□□□□ -0.23
CLDN1-201ENST00000295522 SKAP1Q86WV1 359 aa13.59□□□□□ -0.23
CLDN1-201ENST00000295522 GLIPR1L2Q4G1C9 344 aa13.59□□□□□ -0.23
CLDN1-201ENST00000295522 ZNF326Q5BKZ1 582 aaKnown RBP13.58□□□□□ -0.24
CLDN1-201ENST00000295522 NUDCQ9Y266 331 aa13.58□□□□□ -0.24
CLDN1-201ENST00000295522 NFKBIBQ15653 356 aa13.57□□□□□ -0.24
CLDN1-201ENST00000295522 EXOC6Q8TAG9 804 aa13.56□□□□□ -0.24
CLDN1-201ENST00000295522 NCAPD3P42695 1498 aa13.56□□□□□ -0.24
CLDN1-201ENST00000295522 CHIC2Q9UKJ5 165 aa13.55□□□□□ -0.24
CLDN1-201ENST00000295522 PEG3Q9GZU2 1588 aa13.55□□□□□ -0.24
CLDN1-201ENST00000295522 PHLDB1Q86UU1 1377 aa13.54□□□□□ -0.24
CLDN1-201ENST00000295522 CUX2O14529 1486 aa13.54□□□□□ -0.24
CLDN1-201ENST00000295522 RSPH6AQ9H0K4 717 aa13.54□□□□□ -0.24
CLDN1-201ENST00000295522 NAP1L5Q96NT1 182 aaPredicted RBP13.53□□□□□ -0.24
CLDN1-201ENST00000295522 ARID4BQ4LE39 1312 aaPredicted RBP13.53□□□□□ -0.24
CLDN1-201ENST00000295522 TMC1Q8TDI8 760 aa13.52□□□□□ -0.24
CLDN1-201ENST00000295522 TCERG1O14776 1098 aaKnown RBP13.52□□□□□ -0.25
CLDN1-201ENST00000295522 C11orf95C9JLR9 678 aaPredicted RBP13.52□□□□□ -0.25
CLDN1-201ENST00000295522 WASHC2CQ9Y4E1 1318 aa13.52□□□□□ -0.25
CLDN1-201ENST00000295522 DDRGK1Q96HY6 314 aa13.51□□□□□ -0.25
CLDN1-201ENST00000295522 RRP7BPQ9NSQ0 103 aa13.51□□□□□ -0.25
CLDN1-201ENST00000295522 FOXD1Q16676 465 aa13.51□□□□□ -0.25
CLDN1-201ENST00000295522 ARID3CA6NKF2 412 aa13.5□□□□□ -0.25
CLDN1-201ENST00000295522 FRAT2O75474 233 aaPredicted RBP13.48□□□□□ -0.25
CLDN1-201ENST00000295522 BACH2Q9BYV9 841 aa13.48□□□□□ -0.25
CLDN1-201ENST00000295522 PLIN1O60240 522 aa13.47□□□□□ -0.25
CLDN1-201ENST00000295522 KIF27Q86VH2 1401 aa13.46□□□□□ -0.25
CLDN1-201ENST00000295522 CNTLNQ9NXG0 1405 aa13.46□□□□□ -0.25
CLDN1-201ENST00000295522 ZMYND15Q9H091 742 aa13.45□□□□□ -0.26
CLDN1-201ENST00000295522 HMGXB3Q12766 1538 aa13.44□□□□□ -0.26
CLDN1-201ENST00000295522 RGS3P49796 1198 aa13.43□□□□□ -0.26
CLDN1-201ENST00000295522 L3MBTL2Q969R5 705 aa13.43□□□□□ -0.26
CLDN1-201ENST00000295522 ARHGAP35Q9NRY4 1499 aa13.43□□□□□ -0.26
CLDN1-201ENST00000295522 RRP1P56182 461 aaKnown RBP13.43□□□□□ -0.26
CLDN1-201ENST00000295522 DCAF11Q8TEB1 546 aa13.42□□□□□ -0.26
CLDN1-201ENST00000295522 RCAN3Q9UKA8 241 aa13.42□□□□□ -0.26
CLDN1-201ENST00000295522 FHAD1B1AJZ9 1412 aa13.41□□□□□ -0.26
CLDN1-201ENST00000295522 SMG6Q86US8 1419 aaKnown RBP13.41□□□□□ -0.26
CLDN1-201ENST00000295522 CCDC7Q96M83 1385 aa13.41□□□□□ -0.26
CLDN1-201ENST00000295522 FAM43AQ8N2R8 423 aa13.41□□□□□ -0.26
CLDN1-201ENST00000295522 NESP48681 1621 aa13.41□□□□□ -0.26
CLDN1-201ENST00000295522 HSP90AA2PQ14568 343 aaPredicted RBP13.4□□□□□ -0.26
CLDN1-201ENST00000295522 CCDC18Q5T9S5 1454 aa13.39□□□□□ -0.27
CLDN1-201ENST00000295522 SLKQ9H2G2 1235 aaPredicted RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms