RNA–Protein interactions for RNA: ENST00000294816.6

LMX1A-201, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-201ENST00000294816 WDR97A6NE52 1622 aa14.36□□□□□ -0.11
LMX1A-201ENST00000294816 BICRAQ9NZM4 1560 aa14.36□□□□□ -0.11
LMX1A-201ENST00000294816 CCER2I3L3R5 266 aa14.35□□□□□ -0.11
LMX1A-201ENST00000294816 MAPKBP1O60336 1514 aa14.33□□□□□ -0.11
LMX1A-201ENST00000294816 SETD5Q9C0A6 1442 aa14.33□□□□□ -0.12
LMX1A-201ENST00000294816 CUX2O14529 1486 aa14.31□□□□□ -0.12
LMX1A-201ENST00000294816 FANCIQ9NVI1 1328 aa14.29□□□□□ -0.12
LMX1A-201ENST00000294816 PRXQ9BXM0 1461 aa14.28□□□□□ -0.12
LMX1A-201ENST00000294816 P3H3Q8IVL6 736 aa14.26□□□□□ -0.13
LMX1A-201ENST00000294816 ERICH3Q5RHP9 1530 aa14.25□□□□□ -0.13
LMX1A-201ENST00000294816 TONSLQ96HA7 1378 aa14.24□□□□□ -0.13
LMX1A-201ENST00000294816 DEKP35659 375 aaKnown RBP14.24□□□□□ -0.13
LMX1A-201ENST00000294816 ARHGAP35Q9NRY4 1499 aa14.24□□□□□ -0.13
LMX1A-201ENST00000294816 NBR1Q14596 966 aa14.23□□□□□ -0.13
LMX1A-201ENST00000294816 TOP2BQ02880 1626 aa14.23□□□□□ -0.13
LMX1A-201ENST00000294816 KIF27Q86VH2 1401 aa14.22□□□□□ -0.13
LMX1A-201ENST00000294816 ATAD2BQ9ULI0 1458 aa14.21□□□□□ -0.13
LMX1A-201ENST00000294816 B4GALNT3Q6L9W6 998 aa14.21□□□□□ -0.13
LMX1A-201ENST00000294816 PHLDB1Q86UU1 1377 aa14.2□□□□□ -0.14
LMX1A-201ENST00000294816 TIMELESSQ9UNS1 1208 aa14.19□□□□□ -0.14
LMX1A-201ENST00000294816 PPP4R2Q9NY27 417 aa14.18□□□□□ -0.14
LMX1A-201ENST00000294816 FAM9BQ8IZU0 186 aa14.17□□□□□ -0.14
LMX1A-201ENST00000294816 PEG3Q9GZU2 1588 aa14.14□□□□□ -0.15
LMX1A-201ENST00000294816 MYT1LQ9UL68 1186 aa14.14□□□□□ -0.15
LMX1A-201ENST00000294816 CNGB1Q14028 1251 aaPredicted RBP14.14□□□□□ -0.15
LMX1A-201ENST00000294816 TIAM1Q13009 1591 aa14.12□□□□□ -0.15
LMX1A-201ENST00000294816 LRRC9Q6ZRR7 1453 aa14.12□□□□□ -0.15
LMX1A-201ENST00000294816 NOP58Q9Y2X3 529 aaKnown RBP14.11□□□□□ -0.15
LMX1A-201ENST00000294816 BIVM-ERCC5R4GMW8 1640 aa14.1□□□□□ -0.15
LMX1A-201ENST00000294816 CCDC184Q52MB2 194 aa14.09□□□□□ -0.15
LMX1A-201ENST00000294816 CUX1P39880 1505 aa14.08□□□□□ -0.16
LMX1A-201ENST00000294816 PAK3O75914 559 aaPredicted RBP14.08□□□□□ -0.16
LMX1A-201ENST00000294816 MRS2Q9HD23 443 aa14.08□□□□□ -0.16
LMX1A-201ENST00000294816 HSPA5P11021 654 aaKnown RBP14.07□□□□□ -0.16
LMX1A-201ENST00000294816 PRKCSHP14314 528 aaPredicted RBP14.07□□□□□ -0.16
LMX1A-201ENST00000294816 RTL5Q5HYW3 569 aaPredicted RBP14.06□□□□□ -0.16
LMX1A-201ENST00000294816 ERICH6BQ5W0A0 696 aa14.05□□□□□ -0.16
LMX1A-201ENST00000294816 SENP3-EIF4A1A0A087X0R7 540 aa14.05□□□□□ -0.16
LMX1A-201ENST00000294816 WASHC2AQ641Q2 1341 aa14.04□□□□□ -0.16
LMX1A-201ENST00000294816 ANP32AP39687 249 aaKnown RBP14.02□□□□□ -0.16
LMX1A-201ENST00000294816 CARMIL1Q5VZK9 1371 aa14.02□□□□□ -0.16
LMX1A-201ENST00000294816 FHAD1B1AJZ9 1412 aa14.01□□□□□ -0.17
LMX1A-201ENST00000294816 IGF1RP08069 1367 aa14.01□□□□□ -0.17
LMX1A-201ENST00000294816 EIF4G2P78344 907 aaKnown RBP eCLIP14.01□□□□□ -0.17
LMX1A-201ENST00000294816 CCDC18Q5T9S5 1454 aa14.01□□□□□ -0.17
LMX1A-201ENST00000294816 POLR3GLQ9BT43 218 aa14□□□□□ -0.17
LMX1A-201ENST00000294816 CCDC136Q96JN2 1154 aa13.99□□□□□ -0.17
LMX1A-201ENST00000294816 ANO8Q9HCE9 1232 aaPredicted RBP13.99□□□□□ -0.17
LMX1A-201ENST00000294816 FHOD3Q2V2M9 1422 aa13.99□□□□□ -0.17
LMX1A-201ENST00000294816 ZBTB47Q9UFB7 747 aaPredicted RBP13.99□□□□□ -0.17
LMX1A-201ENST00000294816 CHIC2Q9UKJ5 165 aa13.99□□□□□ -0.17
LMX1A-201ENST00000294816 MAP3K1Q13233 1512 aa13.98□□□□□ -0.17
LMX1A-201ENST00000294816 RTN4Q9NQC3 1192 aaKnown RBP13.98□□□□□ -0.17
LMX1A-201ENST00000294816 RRP7BPQ9NSQ0 103 aa13.98□□□□□ -0.17
LMX1A-201ENST00000294816 NPM2Q86SE8 214 aaKnown RBP13.97□□□□□ -0.17
LMX1A-201ENST00000294816 PRKRIP1Q9H875 184 aaPredicted RBP13.96□□□□□ -0.17
LMX1A-201ENST00000294816 PCF11O94913 1555 aaKnown RBP13.95□□□□□ -0.18
LMX1A-201ENST00000294816 MTUS2Q5JR59 1369 aa13.95□□□□□ -0.18
LMX1A-201ENST00000294816 ZBED9Q6R2W3 1325 aa13.94□□□□□ -0.18
LMX1A-201ENST00000294816 UACAQ9BZF9 1416 aa13.94□□□□□ -0.18
LMX1A-201ENST00000294816 IPO9Q96P70 1041 aaKnown RBP13.93□□□□□ -0.18
LMX1A-201ENST00000294816 FGD6Q6ZV73 1430 aa13.92□□□□□ -0.18
LMX1A-201ENST00000294816 C11orf95C9JLR9 678 aaPredicted RBP13.92□□□□□ -0.18
LMX1A-201ENST00000294816 CNTLNQ9NXG0 1405 aa13.92□□□□□ -0.18
LMX1A-201ENST00000294816 FOXD1Q16676 465 aa13.91□□□□□ -0.18
LMX1A-201ENST00000294816 PTPRKQ15262 1439 aa13.9□□□□□ -0.18
LMX1A-201ENST00000294816 AKNAQ7Z591 1439 aa13.9□□□□□ -0.18
LMX1A-201ENST00000294816 SALL2Q9Y467 1007 aaPredicted RBP13.9□□□□□ -0.18
LMX1A-201ENST00000294816 CC2D2AQ9P2K1 1620 aa13.9□□□□□ -0.18
LMX1A-201ENST00000294816 IL27Q8NEV9 243 aa13.9□□□□□ -0.18
LMX1A-201ENST00000294816 AQRO60306 1485 aaKnown RBP eCLIP13.89□□□□□ -0.19
LMX1A-201ENST00000294816 DNAJC5BQ9UF47 199 aa13.89□□□□□ -0.19
LMX1A-201ENST00000294816 LAS1LQ9Y4W2 734 aaKnown RBP13.89□□□□□ -0.19
LMX1A-201ENST00000294816 L3MBTL2Q969R5 705 aa13.88□□□□□ -0.19
LMX1A-201ENST00000294816 HFM1A2PYH4 1435 aa13.88□□□□□ -0.19
LMX1A-201ENST00000294816 CFAP43Q8NDM7 1665 aa13.87□□□□□ -0.19
LMX1A-201ENST00000294816 CCDC7Q96M83 1385 aa13.87□□□□□ -0.19
LMX1A-201ENST00000294816 FMN1Q68DA7 1419 aa13.86□□□□□ -0.19
LMX1A-201ENST00000294816 NAIPQ13075 1403 aa13.86□□□□□ -0.19
LMX1A-201ENST00000294816 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.85□□□□□ -0.19
LMX1A-201ENST00000294816 PTPN23Q9H3S7 1636 aa13.84□□□□□ -0.19
LMX1A-201ENST00000294816 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.84□□□□□ -0.19
LMX1A-201ENST00000294816 NUDCQ9Y266 331 aa13.84□□□□□ -0.19
LMX1A-201ENST00000294816 ZNF326Q5BKZ1 582 aaKnown RBP13.83□□□□□ -0.2
LMX1A-201ENST00000294816 NEFMP07197 916 aa13.83□□□□□ -0.2
LMX1A-201ENST00000294816 CFTRP13569 1480 aa13.83□□□□□ -0.2
LMX1A-201ENST00000294816 FYCO1Q9BQS8 1478 aa13.83□□□□□ -0.2
LMX1A-201ENST00000294816 CASKIN1Q8WXD9 1431 aa13.82□□□□□ -0.2
LMX1A-201ENST00000294816 FGD5Q6ZNL6 1462 aa13.82□□□□□ -0.2
LMX1A-201ENST00000294816 KIF7Q2M1P5 1343 aa13.81□□□□□ -0.2
LMX1A-201ENST00000294816 ARID3CA6NKF2 412 aa13.81□□□□□ -0.2
LMX1A-201ENST00000294816 MPHOSPH9Q99550 1183 aa13.81□□□□□ -0.2
LMX1A-201ENST00000294816 NCOA2Q15596 1464 aa13.8□□□□□ -0.2
LMX1A-201ENST00000294816 KDM5BQ9UGL1 1544 aa13.8□□□□□ -0.2
LMX1A-201ENST00000294816 NBPF8Q3BBV2 869 aa13.79□□□□□ -0.2
LMX1A-201ENST00000294816 NCOA1Q15788 1441 aa13.78□□□□□ -0.2
LMX1A-201ENST00000294816 SMG6Q86US8 1419 aaKnown RBP13.78□□□□□ -0.2
LMX1A-201ENST00000294816 MYOM3Q5VTT5 1437 aa13.77□□□□□ -0.21
LMX1A-201ENST00000294816 TMC1Q8TDI8 760 aa13.77□□□□□ -0.21
LMX1A-201ENST00000294816 NCAPD3P42695 1498 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms