RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 IRX6P78412 446 aaPredicted RBP20.68■□□□□ 0.9
CCNF-201ENST00000293968 CUX2O14529 1486 aa20.67■□□□□ 0.9
CCNF-201ENST00000293968 CUX1P39880 1505 aa20.67■□□□□ 0.9
CCNF-201ENST00000293968 RBM19Q9Y4C8 960 aaKnown RBP20.65■□□□□ 0.9
CCNF-201ENST00000293968 PHLDB1Q86UU1 1377 aa20.65■□□□□ 0.9
CCNF-201ENST00000293968 TONSLQ96HA7 1378 aa20.63■□□□□ 0.89
CCNF-201ENST00000293968 WDR97A6NE52 1622 aa20.62■□□□□ 0.89
CCNF-201ENST00000293968 PPP1R15AO75807 674 aaPredicted RBP20.62■□□□□ 0.89
CCNF-201ENST00000293968 HNRNPUQ00839 825 aaKnown RBP eCLIP20.61■□□□□ 0.89
CCNF-201ENST00000293968 CARMIL1Q5VZK9 1371 aa20.61■□□□□ 0.89
CCNF-201ENST00000293968 MAPKBP1O60336 1514 aa20.61■□□□□ 0.89
CCNF-201ENST00000293968 ERICH6Q7L0X2 663 aa20.6■□□□□ 0.89
CCNF-201ENST00000293968 BIVM-ERCC5R4GMW8 1640 aa20.59■□□□□ 0.89
CCNF-201ENST00000293968 IGF1RP08069 1367 aa20.58■□□□□ 0.88
CCNF-201ENST00000293968 CCER2I3L3R5 266 aa20.54■□□□□ 0.88
CCNF-201ENST00000293968 LRRC9Q6ZRR7 1453 aa20.53■□□□□ 0.88
CCNF-201ENST00000293968 CNGB1Q14028 1251 aaPredicted RBP20.52■□□□□ 0.88
CCNF-201ENST00000293968 BCL11AQ9H165 835 aa20.51■□□□□ 0.87
CCNF-201ENST00000293968 TIAM1Q13009 1591 aa20.49■□□□□ 0.87
CCNF-201ENST00000293968 CDK11AQ9UQ88 783 aaPredicted RBP20.49■□□□□ 0.87
CCNF-201ENST00000293968 FHOD3Q2V2M9 1422 aa20.49■□□□□ 0.87
CCNF-201ENST00000293968 TIMELESSQ9UNS1 1208 aa20.48■□□□□ 0.87
CCNF-201ENST00000293968 FHAD1B1AJZ9 1412 aa20.47■□□□□ 0.87
CCNF-201ENST00000293968 CHIC2Q9UKJ5 165 aa20.46■□□□□ 0.87
CCNF-201ENST00000293968 CFTRP13569 1480 aa20.43■□□□□ 0.86
CCNF-201ENST00000293968 NCAPD3P42695 1498 aa20.42■□□□□ 0.86
CCNF-201ENST00000293968 MTUS2Q5JR59 1369 aa20.42■□□□□ 0.86
CCNF-201ENST00000293968 RRP7BPQ9NSQ0 103 aa20.41■□□□□ 0.86
CCNF-201ENST00000293968 FAM9BQ8IZU0 186 aa20.4■□□□□ 0.86
CCNF-201ENST00000293968 ARID3CA6NKF2 412 aa20.39■□□□□ 0.85
CCNF-201ENST00000293968 FGD5Q6ZNL6 1462 aa20.36■□□□□ 0.85
CCNF-201ENST00000293968 POLR3GLQ9BT43 218 aa20.35■□□□□ 0.85
CCNF-201ENST00000293968 HSPA5P11021 654 aaKnown RBP20.33■□□□□ 0.84
CCNF-201ENST00000293968 MSH5O43196 834 aa20.31■□□□□ 0.84
CCNF-201ENST00000293968 CCDC18Q5T9S5 1454 aa20.3■□□□□ 0.84
CCNF-201ENST00000293968 PCF11O94913 1555 aaKnown RBP20.3■□□□□ 0.84
CCNF-201ENST00000293968 HMGXB3Q12766 1538 aa20.3■□□□□ 0.84
CCNF-201ENST00000293968 CADPSQ9ULU8 1353 aa20.3■□□□□ 0.84
CCNF-201ENST00000293968 MAP3K1Q13233 1512 aa20.28■□□□□ 0.84
CCNF-201ENST00000293968 SENP3-EIF4A1A0A087X0R7 540 aa20.28■□□□□ 0.84
CCNF-201ENST00000293968 MRS2Q9HD23 443 aa20.27■□□□□ 0.84
CCNF-201ENST00000293968 EIF4G2P78344 907 aaKnown RBP eCLIP20.27■□□□□ 0.84
CCNF-201ENST00000293968 FOXD1Q16676 465 aa20.27■□□□□ 0.84
CCNF-201ENST00000293968 B4GALNT3Q6L9W6 998 aa20.27■□□□□ 0.84
CCNF-201ENST00000293968 FGD6Q6ZV73 1430 aa20.26■□□□□ 0.83
CCNF-201ENST00000293968 RAD54L2Q9Y4B4 1467 aa20.25■□□□□ 0.83
CCNF-201ENST00000293968 CCDC184Q52MB2 194 aa20.23■□□□□ 0.83
CCNF-201ENST00000293968 WASHC2AQ641Q2 1341 aa20.22■□□□□ 0.83
CCNF-201ENST00000293968 PPP4R2Q9NY27 417 aa20.2■□□□□ 0.82
CCNF-201ENST00000293968 UACAQ9BZF9 1416 aa20.2■□□□□ 0.82
CCNF-201ENST00000293968 CASKIN1Q8WXD9 1431 aa20.19■□□□□ 0.82
CCNF-201ENST00000293968 ZNF326Q5BKZ1 582 aaKnown RBP20.19■□□□□ 0.82
CCNF-201ENST00000293968 PTPRKQ15262 1439 aa20.18■□□□□ 0.82
CCNF-201ENST00000293968 FYCO1Q9BQS8 1478 aa20.17■□□□□ 0.82
CCNF-201ENST00000293968 FMN1Q68DA7 1419 aa20.16■□□□□ 0.82
CCNF-201ENST00000293968 L3MBTL2Q969R5 705 aa20.15■□□□□ 0.82
CCNF-201ENST00000293968 HFM1A2PYH4 1435 aa20.13■□□□□ 0.81
CCNF-201ENST00000293968 FANCIQ9NVI1 1328 aa20.12■□□□□ 0.81
CCNF-201ENST00000293968 NBR1Q14596 966 aa20.12■□□□□ 0.81
CCNF-201ENST00000293968 FANCD2Q9BXW9 1451 aa20.12■□□□□ 0.81
CCNF-201ENST00000293968 TDRD9Q8NDG6 1382 aaKnown RBP20.12■□□□□ 0.81
CCNF-201ENST00000293968 AQRO60306 1485 aaKnown RBP eCLIP20.12■□□□□ 0.813e-7■■■■□ 21.3
CCNF-201ENST00000293968 NAIPQ13075 1403 aa20.11■□□□□ 0.81
CCNF-201ENST00000293968 MPHOSPH9Q99550 1183 aa20.1■□□□□ 0.81
CCNF-201ENST00000293968 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.09■□□□□ 0.81
CCNF-201ENST00000293968 CFAP43Q8NDM7 1665 aa20.09■□□□□ 0.81
CCNF-201ENST00000293968 PRKRIP1Q9H875 184 aaPredicted RBP20.09■□□□□ 0.81
CCNF-201ENST00000293968 NCOA2Q15596 1464 aa20.08■□□□□ 0.81
CCNF-201ENST00000293968 C11orf95C9JLR9 678 aaPredicted RBP20.08■□□□□ 0.81
CCNF-201ENST00000293968 MYOM3Q5VTT5 1437 aa20.07■□□□□ 0.8
CCNF-201ENST00000293968 SLC4A1APQ9BWU0 796 aaKnown RBP20.03■□□□□ 0.8
CCNF-201ENST00000293968 PTPN23Q9H3S7 1636 aa20.03■□□□□ 0.8
CCNF-201ENST00000293968 CCDC136Q96JN2 1154 aa20.02■□□□□ 0.79
CCNF-201ENST00000293968 EFCAB5A4FU69 1503 aa20.01■□□□□ 0.79
CCNF-201ENST00000293968 CNTLNQ9NXG0 1405 aa20■□□□□ 0.79
CCNF-201ENST00000293968 POLA1P09884 1462 aaPredicted RBP20■□□□□ 0.79
CCNF-201ENST00000293968 ERICH6BQ5W0A0 696 aa20■□□□□ 0.79
CCNF-201ENST00000293968 CCDC7Q96M83 1385 aa19.99■□□□□ 0.79
CCNF-201ENST00000293968 DEKP35659 375 aaKnown RBP19.97■□□□□ 0.79
CCNF-201ENST00000293968 NBPF8Q3BBV2 869 aa19.97■□□□□ 0.79
CCNF-201ENST00000293968 ZBED9Q6R2W3 1325 aa19.97■□□□□ 0.79
CCNF-201ENST00000293968 NOP58Q9Y2X3 529 aaKnown RBP19.96■□□□□ 0.79
CCNF-201ENST00000293968 NESP48681 1621 aa19.96■□□□□ 0.79
CCNF-201ENST00000293968 SALL2Q9Y467 1007 aaPredicted RBP19.95■□□□□ 0.78
CCNF-201ENST00000293968 ZNF777Q9ULD5 760 aaPredicted RBP19.94■□□□□ 0.78
CCNF-201ENST00000293968 KIF7Q2M1P5 1343 aa19.94■□□□□ 0.78
CCNF-201ENST00000293968 TOPBP1Q92547 1522 aa19.94■□□□□ 0.78
CCNF-201ENST00000293968 ABCA10Q8WWZ4 1543 aa19.93■□□□□ 0.78
CCNF-201ENST00000293968 ANP32AP39687 249 aaKnown RBP19.93■□□□□ 0.78
CCNF-201ENST00000293968 NPM2Q86SE8 214 aaKnown RBP19.93■□□□□ 0.78
CCNF-201ENST00000293968 SNAPC4Q5SXM2 1469 aa19.93■□□□□ 0.78
CCNF-201ENST00000293968 RTL5Q5HYW3 569 aaPredicted RBP19.9■□□□□ 0.78
CCNF-201ENST00000293968 TMC1Q8TDI8 760 aa19.9■□□□□ 0.78
CCNF-201ENST00000293968 PAK3O75914 559 aaPredicted RBP19.88■□□□□ 0.77
CCNF-201ENST00000293968 ZNF644Q9H582 1327 aaPredicted RBP19.88■□□□□ 0.77
CCNF-201ENST00000293968 AKNAQ7Z591 1439 aa19.88■□□□□ 0.77
CCNF-201ENST00000293968 DNMBPQ6XZF7 1577 aa19.86■□□□□ 0.77
CCNF-201ENST00000293968 ZBTB47Q9UFB7 747 aaPredicted RBP19.84■□□□□ 0.77
CCNF-201ENST00000293968 MYT1LQ9UL68 1186 aa19.84■□□□□ 0.77
CCNF-201ENST00000293968 KDM2AQ9Y2K7 1162 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms