RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 GRIN2AQ12879 1464 aa26.49■■□□□ 1.83
CPSF4-201ENST00000292476 CARMIL1Q5VZK9 1371 aa26.46■■□□□ 1.83
CPSF4-201ENST00000292476 TRIM26Q12899 539 aaPredicted RBP26.45■■□□□ 1.82
CPSF4-201ENST00000292476 CLASP1Q7Z460 1538 aa26.45■■□□□ 1.82
CPSF4-201ENST00000292476 CEP162Q5TB80 1403 aa26.43■■□□□ 1.82
CPSF4-201ENST00000292476 RIMBP3CA6NJZ7 1639 aa26.43■■□□□ 1.82
CPSF4-201ENST00000292476 RIMBP3BA6NNM3 1639 aa26.43■■□□□ 1.82
CPSF4-201ENST00000292476 RIMBP3Q9UFD9 1639 aa26.43■■□□□ 1.82
CPSF4-201ENST00000292476 CUL7Q14999 1698 aa26.42■■□□□ 1.82
CPSF4-201ENST00000292476 ARHGEF11O15085 1522 aa26.41■■□□□ 1.82
CPSF4-201ENST00000292476 CEP170Q5SW79 1584 aa26.39■■□□□ 1.81
CPSF4-201ENST00000292476 NUP160Q12769 1436 aa26.35■■□□□ 1.81
CPSF4-201ENST00000292476 CLIP1P30622 1438 aa26.28■■□□□ 1.8
CPSF4-201ENST00000292476 ARAP1Q96P48 1450 aa26.2■■□□□ 1.78
CPSF4-201ENST00000292476 CYB5RLQ6IPT4 315 aa26.19■■□□□ 1.78
CPSF4-201ENST00000292476 SHROOM2Q13796 1616 aa26.16■■□□□ 1.78
CPSF4-201ENST00000292476 ERCC6L2Q5T890 1561 aa26.15■■□□□ 1.78
CPSF4-201ENST00000292476 JPH4Q96JJ6 628 aa26.1■■□□□ 1.77
CPSF4-201ENST00000292476 KIAA0586Q9BVV6 1533 aa26.1■■□□□ 1.77
CPSF4-201ENST00000292476 PRG4Q92954 1404 aaPredicted RBP26.07■■□□□ 1.76
CPSF4-201ENST00000292476 VPS8Q8N3P4 1428 aa26.05■■□□□ 1.76
CPSF4-201ENST00000292476 RANGAP1P46060 587 aaPredicted RBP26.05■■□□□ 1.76
CPSF4-201ENST00000292476 CTTNBP2Q8WZ74 1663 aa26.04■■□□□ 1.76
CPSF4-201ENST00000292476 IQGAP2Q13576 1575 aa25.99■■□□□ 1.75
CPSF4-201ENST00000292476 ARHGAP35Q9NRY4 1499 aa25.98■■□□□ 1.75
CPSF4-201ENST00000292476 ZEB1P37275 1124 aaPredicted RBP25.96■■□□□ 1.75
CPSF4-201ENST00000292476 EFCAB5A4FU69 1503 aa25.96■■□□□ 1.75
CPSF4-201ENST00000292476 APLP2Q06481 763 aa25.91■■□□□ 1.74
CPSF4-201ENST00000292476 CARMIL2Q6F5E8 1435 aa25.83■■□□□ 1.72
CPSF4-201ENST00000292476 TTBK1Q5TCY1 1321 aaPredicted RBP25.82■■□□□ 1.72
CPSF4-201ENST00000292476 UGGT2Q9NYU1 1516 aa25.82■■□□□ 1.72
CPSF4-201ENST00000292476 PPARGC1BQ86YN6 1023 aaKnown RBP25.81■■□□□ 1.72
CPSF4-201ENST00000292476 DISP1Q96F81 1524 aa25.8■■□□□ 1.72
CPSF4-201ENST00000292476 SAMD9Q5K651 1589 aa25.78■■□□□ 1.72
CPSF4-201ENST00000292476 FMN1Q68DA7 1419 aa25.76■■□□□ 1.71
CPSF4-201ENST00000292476 KIAA0556O60303 1618 aa25.75■■□□□ 1.71
CPSF4-201ENST00000292476 PTPRGP23470 1445 aa25.74■■□□□ 1.71
CPSF4-201ENST00000292476 FHOD3Q2V2M9 1422 aa25.71■■□□□ 1.71
CPSF4-201ENST00000292476 P3H3Q8IVL6 736 aa25.71■■□□□ 1.71
CPSF4-201ENST00000292476 ADCY10Q96PN6 1610 aa25.68■■□□□ 1.7
CPSF4-201ENST00000292476 TRHP20396 242 aaPredicted RBP25.68■■□□□ 1.7
CPSF4-201ENST00000292476 MAP3K1Q13233 1512 aa25.67■■□□□ 1.7
CPSF4-201ENST00000292476 FYCO1Q9BQS8 1478 aa25.64■■□□□ 1.7
CPSF4-201ENST00000292476 CASKIN1Q8WXD9 1431 aa25.64■■□□□ 1.69
CPSF4-201ENST00000292476 NPM1P06748 294 aaKnown RBP eCLIP25.58■■□□□ 1.69
CPSF4-201ENST00000292476 UACAQ9BZF9 1416 aa25.57■■□□□ 1.68
CPSF4-201ENST00000292476 PCF11O94913 1555 aaKnown RBP25.57■■□□□ 1.68
CPSF4-201ENST00000292476 TIAM1Q13009 1591 aa25.53■■□□□ 1.68
CPSF4-201ENST00000292476 ABCC2Q92887 1545 aa25.53■■□□□ 1.68
CPSF4-201ENST00000292476 UHRF1BP1LA0JNW5 1464 aa25.51■■□□□ 1.67
CPSF4-201ENST00000292476 PLB1Q6P1J6 1458 aa25.51■■□□□ 1.67
CPSF4-201ENST00000292476 ATP1B4Q9UN42 357 aaPredicted RBP25.5■■□□□ 1.67
CPSF4-201ENST00000292476 MAPKBP1O60336 1514 aa25.47■■□□□ 1.67
CPSF4-201ENST00000292476 CFAP43Q8NDM7 1665 aa25.47■■□□□ 1.67
CPSF4-201ENST00000292476 KANK4Q5T7N3 995 aaPredicted RBP25.45■■□□□ 1.67
CPSF4-201ENST00000292476 ABCA8O94911 1581 aa25.45■■□□□ 1.66
CPSF4-201ENST00000292476 CCDC18Q5T9S5 1454 aa25.43■■□□□ 1.66
CPSF4-201ENST00000292476 LRRC9Q6ZRR7 1453 aa25.43■■□□□ 1.66
CPSF4-201ENST00000292476 HECW1Q76N89 1606 aa25.43■■□□□ 1.66
CPSF4-201ENST00000292476 KDM5BQ9UGL1 1544 aa25.41■■□□□ 1.66
CPSF4-201ENST00000292476 KIF13AQ9H1H9 1805 aa25.41■■□□□ 1.66
CPSF4-201ENST00000292476 ZCCHC11Q5TAX3 1644 aaKnown RBP25.41■■□□□ 1.66
CPSF4-201ENST00000292476 ABCC10Q5T3U5 1492 aa25.37■■□□□ 1.65
CPSF4-201ENST00000292476 ASXL2Q76L83 1435 aa25.36■■□□□ 1.65
CPSF4-201ENST00000292476 ARID3CA6NKF2 412 aa25.36■■□□□ 1.65
CPSF4-201ENST00000292476 DIP2BQ9P265 1576 aa25.35■■□□□ 1.65
CPSF4-201ENST00000292476 FAM69CQ0P6D2 419 aa25.35■■□□□ 1.65
CPSF4-201ENST00000292476 RAPGEF6Q8TEU7 1601 aa25.34■■□□□ 1.65
CPSF4-201ENST00000292476 MTUS2Q5JR59 1369 aa25.3■■□□□ 1.64
CPSF4-201ENST00000292476 EPRSP07814 1512 aaKnown RBP25.3■■□□□ 1.64
CPSF4-201ENST00000292476 CDK11AQ9UQ88 783 aaPredicted RBP25.26■■□□□ 1.63
CPSF4-201ENST00000292476 RRBP1Q9P2E9 1410 aaKnown RBP25.25■■□□□ 1.63
CPSF4-201ENST00000292476 EHBP1L1Q8N3D4 1523 aa25.25■■□□□ 1.63
CPSF4-201ENST00000292476 ATP10BO94823 1461 aa25.25■■□□□ 1.63
CPSF4-201ENST00000292476 LRRIQ1Q96JM4 1722 aa25.24■■□□□ 1.63
CPSF4-201ENST00000292476 NUP153P49790 1475 aaKnown RBP25.24■■□□□ 1.63
CPSF4-201ENST00000292476 WDR7Q9Y4E6 1490 aa25.23■■□□□ 1.63
CPSF4-201ENST00000292476 TSPOAP1O95153 1857 aa25.21■■□□□ 1.63
CPSF4-201ENST00000292476 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.2■■□□□ 1.63
CPSF4-201ENST00000292476 HNRNPUL2Q1KMD3 747 aaKnown RBP25.2■■□□□ 1.63
CPSF4-201ENST00000292476 CCNB3Q8WWL7 1395 aa25.19■■□□□ 1.62
CPSF4-201ENST00000292476 CCER1Q8TC90 406 aaPredicted RBP25.19■■□□□ 1.62
CPSF4-201ENST00000292476 GLI2P10070 1586 aa25.17■■□□□ 1.62
CPSF4-201ENST00000292476 SUPT6HQ7KZ85 1726 aaKnown RBP25.17■■□□□ 1.62
CPSF4-201ENST00000292476 KCNH8Q96L42 1107 aa25.17■■□□□ 1.62
CPSF4-201ENST00000292476 CDK13Q14004 1512 aaKnown RBP25.15■■□□□ 1.62
CPSF4-201ENST00000292476 PHLDB1Q86UU1 1377 aa25.14■■□□□ 1.62
CPSF4-201ENST00000292476 NCOA2Q15596 1464 aa25.11■■□□□ 1.61
CPSF4-201ENST00000292476 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.1■■□□□ 1.61
CPSF4-201ENST00000292476 MAP3K4Q9Y6R4 1608 aa25.1■■□□□ 1.61
CPSF4-201ENST00000292476 MAGI3Q5TCQ9 1506 aa25.08■■□□□ 1.61
CPSF4-201ENST00000292476 PPRC1Q5VV67 1664 aaKnown RBP25.07■■□□□ 1.6
CPSF4-201ENST00000292476 MYOM3Q5VTT5 1437 aa25.05■■□□□ 1.6
CPSF4-201ENST00000292476 TROQ12816 1431 aaPredicted RBP25.04■■□□□ 1.6
CPSF4-201ENST00000292476 PLEKHD1A6NEE1 506 aa25.04■■□□□ 1.6
CPSF4-201ENST00000292476 FGD6Q6ZV73 1430 aa25.03■■□□□ 1.6
CPSF4-201ENST00000292476 CD109Q6YHK3 1445 aa25■■□□□ 1.59
CPSF4-201ENST00000292476 FAM50AQ14320 339 aaKnown RBP24.97■■□□□ 1.59
CPSF4-201ENST00000292476 MIA2Q96PC5 1412 aa24.97■■□□□ 1.59
CPSF4-201ENST00000292476 KDM6BO15054 1643 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms