RNA–Protein interactions for RNA: ENST00000289547.8

NPC1L1-201, Transcript of NPC1 like intracellular cholesterol transporter 1, humanhuman

TSL 1 (best) BASIC

Gene NPC1L1, Length 5,048 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1-201ENST00000289547 CFTRP13569 1480 aa15.91■□□□□ 0.14
NPC1L1-201ENST00000289547 UNC13AQ9UPW8 1703 aa15.9■□□□□ 0.14
NPC1L1-201ENST00000289547 STAG3Q9UJ98 1225 aa15.9■□□□□ 0.14
NPC1L1-201ENST00000289547 PLPPR3Q6T4P5 718 aa15.88■□□□□ 0.13
NPC1L1-201ENST00000289547 CNGB1Q14028 1251 aaPredicted RBP15.87■□□□□ 0.13
NPC1L1-201ENST00000289547 NESP48681 1621 aa15.87■□□□□ 0.13
NPC1L1-201ENST00000289547 LAMC3Q9Y6N6 1575 aa15.85■□□□□ 0.13
NPC1L1-201ENST00000289547 POLR3GLQ9BT43 218 aa15.85■□□□□ 0.13
NPC1L1-201ENST00000289547 TNIKQ9UKE5 1360 aa15.85■□□□□ 0.13
NPC1L1-201ENST00000289547 FHAD1B1AJZ9 1412 aa15.84■□□□□ 0.13
NPC1L1-201ENST00000289547 ARID4BQ4LE39 1312 aaPredicted RBP15.84■□□□□ 0.13
NPC1L1-201ENST00000289547 FGD5Q6ZNL6 1462 aa15.84■□□□□ 0.13
NPC1L1-201ENST00000289547 EIF5BO60841 1220 aaKnown RBP15.83■□□□□ 0.13
NPC1L1-201ENST00000289547 GAPVD1Q14C86 1478 aa15.82■□□□□ 0.12
NPC1L1-201ENST00000289547 IFT140Q96RY7 1462 aa15.82■□□□□ 0.12
NPC1L1-201ENST00000289547 RAPGEF2Q9Y4G8 1499 aa15.81■□□□□ 0.12
NPC1L1-201ENST00000289547 SLC4A1APQ9BWU0 796 aaKnown RBP15.81■□□□□ 0.12
NPC1L1-201ENST00000289547 JPH4Q96JJ6 628 aa15.8■□□□□ 0.12
NPC1L1-201ENST00000289547 CFDP1Q9UEE9 299 aaPredicted RBP15.79■□□□□ 0.12
NPC1L1-201ENST00000289547 CEP162Q5TB80 1403 aa15.79■□□□□ 0.12
NPC1L1-201ENST00000289547 CLSPNQ9HAW4 1339 aa15.78■□□□□ 0.12
NPC1L1-201ENST00000289547 CHGAP10645 457 aaKnown RBP15.75■□□□□ 0.11
NPC1L1-201ENST00000289547 FKBP8Q14318 412 aa15.74■□□□□ 0.11
NPC1L1-201ENST00000289547 CYB5RLQ6IPT4 315 aa15.74■□□□□ 0.11
NPC1L1-201ENST00000289547 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.74■□□□□ 0.113e-6■■□□□ 11.4
NPC1L1-201ENST00000289547 RAD54L2Q9Y4B4 1467 aa15.74■□□□□ 0.11
NPC1L1-201ENST00000289547 GRIN2BQ13224 1484 aa15.74■□□□□ 0.11
NPC1L1-201ENST00000289547 CHIC2Q9UKJ5 165 aa15.72■□□□□ 0.11
NPC1L1-201ENST00000289547 ZNF326Q5BKZ1 582 aaKnown RBP15.71■□□□□ 0.11
NPC1L1-201ENST00000289547 AQRO60306 1485 aaKnown RBP eCLIP15.71■□□□□ 0.115e-8■■■□□ 17.4
NPC1L1-201ENST00000289547 ANP32EQ9BTT0 268 aa15.71■□□□□ 0.1
NPC1L1-201ENST00000289547 FMN1Q68DA7 1419 aa15.71■□□□□ 0.1
NPC1L1-201ENST00000289547 CCNB3Q8WWL7 1395 aa15.7■□□□□ 0.1
NPC1L1-201ENST00000289547 ANP32CO43423 234 aa15.7■□□□□ 0.1
NPC1L1-201ENST00000289547 PEG3Q9GZU2 1588 aa15.7■□□□□ 0.1
NPC1L1-201ENST00000289547 TOPBP1Q92547 1522 aa15.68■□□□□ 0.1
NPC1L1-201ENST00000289547 PTPRGP23470 1445 aa15.67■□□□□ 0.1
NPC1L1-201ENST00000289547 ANP32AP39687 249 aaKnown RBP15.66■□□□□ 0.1
NPC1L1-201ENST00000289547 DNMBPQ6XZF7 1577 aa15.65■□□□□ 0.1
NPC1L1-201ENST00000289547 BCL11AQ9H165 835 aa15.64■□□□□ 0.09
NPC1L1-201ENST00000289547 EFCAB2Q5VUJ9 269 aa15.61■□□□□ 0.09
NPC1L1-201ENST00000289547 NBR1Q14596 966 aa15.59■□□□□ 0.09
NPC1L1-201ENST00000289547 IGF1RP08069 1367 aa15.58■□□□□ 0.09
NPC1L1-201ENST00000289547 MIER1Q8N108 512 aa15.58■□□□□ 0.08
NPC1L1-201ENST00000289547 POLA1P09884 1462 aaPredicted RBP15.58■□□□□ 0.08
NPC1L1-201ENST00000289547 PPP1R15AO75807 674 aaPredicted RBP15.57■□□□□ 0.08
NPC1L1-201ENST00000289547 NPM2Q86SE8 214 aaKnown RBP15.55■□□□□ 0.08
NPC1L1-201ENST00000289547 GLIPR1L2Q4G1C9 344 aa15.53■□□□□ 0.08
NPC1L1-201ENST00000289547 RRP7BPQ9NSQ0 103 aa15.53■□□□□ 0.08
NPC1L1-201ENST00000289547 KANK1Q14678 1352 aa15.52■□□□□ 0.08
NPC1L1-201ENST00000289547 SNAPC4Q5SXM2 1469 aa15.52■□□□□ 0.07
NPC1L1-201ENST00000289547 FHOD3Q2V2M9 1422 aa15.5■□□□□ 0.07
NPC1L1-201ENST00000289547 CUX1P39880 1505 aa15.49■□□□□ 0.07
NPC1L1-201ENST00000289547 MLECQ14165 292 aa15.48■□□□□ 0.07
NPC1L1-201ENST00000289547 TOP2BQ02880 1626 aa15.48■□□□□ 0.07
NPC1L1-201ENST00000289547 CCDC18Q5T9S5 1454 aa15.47■□□□□ 0.07
NPC1L1-201ENST00000289547 TONSLQ96HA7 1378 aa15.47■□□□□ 0.07
NPC1L1-201ENST00000289547 VPS8Q8N3P4 1428 aa15.47■□□□□ 0.07
NPC1L1-201ENST00000289547 FAM69CQ0P6D2 419 aa15.46■□□□□ 0.07
NPC1L1-201ENST00000289547 PRG4Q92954 1404 aaPredicted RBP15.46■□□□□ 0.06
NPC1L1-201ENST00000289547 RSPH4AQ5TD94 716 aa15.45■□□□□ 0.06
NPC1L1-201ENST00000289547 HDGFP51858 240 aaKnown RBP15.44■□□□□ 0.06
NPC1L1-201ENST00000289547 ARHGAP35Q9NRY4 1499 aa15.44■□□□□ 0.06
NPC1L1-201ENST00000289547 SYNJ1O43426 1573 aa15.42■□□□□ 0.06
NPC1L1-201ENST00000289547 ABCA10Q8WWZ4 1543 aa15.42■□□□□ 0.06
NPC1L1-201ENST00000289547 ZBTB47Q9UFB7 747 aaPredicted RBP15.42■□□□□ 0.06
NPC1L1-201ENST00000289547 MAGI1Q96QZ7 1491 aaPredicted RBP15.42■□□□□ 0.06
NPC1L1-201ENST00000289547 C14orf37Q86TY3 774 aa15.41■□□□□ 0.06
NPC1L1-201ENST00000289547 URB2Q14146 1524 aaKnown RBP15.4■□□□□ 0.06
NPC1L1-201ENST00000289547 SYNJ2O15056 1496 aa15.4■□□□□ 0.06
NPC1L1-201ENST00000289547 RUSC2Q8N2Y8 1516 aa15.4■□□□□ 0.06
NPC1L1-201ENST00000289547 HNRNPUQ00839 825 aaKnown RBP eCLIP15.39■□□□□ 0.05
NPC1L1-201ENST00000289547 GGT6Q6P531 493 aa15.38■□□□□ 0.05
NPC1L1-201ENST00000289547 DDX10Q13206 875 aaKnown RBP15.38■□□□□ 0.05
NPC1L1-201ENST00000289547 SPAG9O60271 1321 aaKnown RBP15.36■□□□□ 0.05
NPC1L1-201ENST00000289547 NEFMP07197 916 aa15.35■□□□□ 0.05
NPC1L1-201ENST00000289547 AEBP2Q6ZN18 517 aaPredicted RBP15.34■□□□□ 0.05
NPC1L1-201ENST00000289547 KDM2AQ9Y2K7 1162 aa15.32■□□□□ 0.04
NPC1L1-201ENST00000289547 IRX6P78412 446 aaPredicted RBP15.32■□□□□ 0.04
NPC1L1-201ENST00000289547 ANKRD30AQ9BXX3 1397 aa15.32■□□□□ 0.04
NPC1L1-201ENST00000289547 KIAA0586Q9BVV6 1533 aa15.31■□□□□ 0.04
NPC1L1-201ENST00000289547 ERICH3Q5RHP9 1530 aa15.31■□□□□ 0.04
NPC1L1-201ENST00000289547 SUPT16HQ9Y5B9 1047 aaKnown RBP15.29■□□□□ 0.04
NPC1L1-201ENST00000289547 HNRNPMP52272 730 aaKnown RBP eCLIP15.28■□□□□ 0.04
NPC1L1-201ENST00000289547 RTN4Q9NQC3 1192 aaKnown RBP15.28■□□□□ 0.04
NPC1L1-201ENST00000289547 PRDM2Q13029 1718 aa15.27■□□□□ 0.04
NPC1L1-201ENST00000289547 GRIN2AQ12879 1464 aa15.27■□□□□ 0.03
NPC1L1-201ENST00000289547 CCDC136Q96JN2 1154 aa15.27■□□□□ 0.03
NPC1L1-201ENST00000289547 KIF3BO15066 747 aa15.26■□□□□ 0.03
NPC1L1-201ENST00000289547 CUL7Q14999 1698 aa15.26■□□□□ 0.03
NPC1L1-201ENST00000289547 RGL3Q3MIN7 710 aa15.25■□□□□ 0.03
NPC1L1-201ENST00000289547 ZNF608Q9ULD9 1512 aaPredicted RBP15.24■□□□□ 0.03
NPC1L1-201ENST00000289547 EFCAB5A4FU69 1503 aa15.23■□□□□ 0.03
NPC1L1-201ENST00000289547 FAM9BQ8IZU0 186 aa15.22■□□□□ 0.03
NPC1L1-201ENST00000289547 WASHC2CQ9Y4E1 1318 aa15.22■□□□□ 0.03
NPC1L1-201ENST00000289547 KANK4Q5T7N3 995 aaPredicted RBP15.22■□□□□ 0.03
NPC1L1-201ENST00000289547 KIF21BO75037 1637 aa15.22■□□□□ 0.03
NPC1L1-201ENST00000289547 ARXQ96QS3 562 aa15.2■□□□□ 0.02
NPC1L1-201ENST00000289547 SENP3Q9H4L4 574 aaPredicted RBP15.2■□□□□ 0.02
NPC1L1-201ENST00000289547 WDR62O43379 1518 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms