RNA–Protein interactions for RNA: ENST00000287766.8

SLC6A1-201, Transcript of solute carrier family 6 member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SLC6A1, Length 4,502 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1-201ENST00000287766 SMARCA4P51532 1647 aa17.27■□□□□ 0.35
SLC6A1-201ENST00000287766 ANP32AP39687 249 aaKnown RBP17.26■□□□□ 0.35
SLC6A1-201ENST00000287766 CUX2O14529 1486 aa17.22■□□□□ 0.35
SLC6A1-201ENST00000287766 SLC4A1APQ9BWU0 796 aaKnown RBP17.2■□□□□ 0.34
SLC6A1-201ENST00000287766 SMARCA2P51531 1590 aa17.19■□□□□ 0.34
SLC6A1-201ENST00000287766 SUPT16HQ9Y5B9 1047 aaKnown RBP17.19■□□□□ 0.34
SLC6A1-201ENST00000287766 SALL2Q9Y467 1007 aaPredicted RBP17.19■□□□□ 0.34
SLC6A1-201ENST00000287766 CARMIL1Q5VZK9 1371 aa17.18■□□□□ 0.34
SLC6A1-201ENST00000287766 ANP32EQ9BTT0 268 aa17.16■□□□□ 0.34
SLC6A1-201ENST00000287766 ATAD2BQ9ULI0 1458 aa17.15■□□□□ 0.34
SLC6A1-201ENST00000287766 KCNH8Q96L42 1107 aa17.15■□□□□ 0.34
SLC6A1-201ENST00000287766 MRS2Q9HD23 443 aa17.13■□□□□ 0.33
SLC6A1-201ENST00000287766 RAB3GAP2Q9H2M9 1393 aa17.12■□□□□ 0.33
SLC6A1-201ENST00000287766 KDM2AQ9Y2K7 1162 aa17.12■□□□□ 0.33
SLC6A1-201ENST00000287766 BCL11AQ9H165 835 aa17.11■□□□□ 0.33
SLC6A1-201ENST00000287766 EIF4G2P78344 907 aaKnown RBP eCLIP17.08■□□□□ 0.32
SLC6A1-201ENST00000287766 GLIPR1L2Q4G1C9 344 aa17.08■□□□□ 0.32
SLC6A1-201ENST00000287766 DHX57Q6P158 1386 aaKnown RBP17.07■□□□□ 0.32
SLC6A1-201ENST00000287766 SETD5Q9C0A6 1442 aa17.04■□□□□ 0.32
SLC6A1-201ENST00000287766 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.04■□□□□ 0.32
SLC6A1-201ENST00000287766 FOXD1Q16676 465 aa17.03■□□□□ 0.32
SLC6A1-201ENST00000287766 ZBTB47Q9UFB7 747 aaPredicted RBP17■□□□□ 0.31
SLC6A1-201ENST00000287766 TDRD9Q8NDG6 1382 aaKnown RBP16.99■□□□□ 0.31
SLC6A1-201ENST00000287766 TMC1Q8TDI8 760 aa16.99■□□□□ 0.31
SLC6A1-201ENST00000287766 ARXQ96QS3 562 aa16.99■□□□□ 0.31
SLC6A1-201ENST00000287766 FHAD1B1AJZ9 1412 aa16.98■□□□□ 0.31
SLC6A1-201ENST00000287766 CHMP7Q8WUX9 453 aaPredicted RBP16.97■□□□□ 0.31
SLC6A1-201ENST00000287766 FHOD3Q2V2M9 1422 aa16.96■□□□□ 0.31
SLC6A1-201ENST00000287766 RTN4Q9NQC3 1192 aaKnown RBP16.95■□□□□ 0.3
SLC6A1-201ENST00000287766 SYNJ1O43426 1573 aa16.94■□□□□ 0.3
SLC6A1-201ENST00000287766 RGL3Q3MIN7 710 aa16.92■□□□□ 0.3
SLC6A1-201ENST00000287766 PPP1R15AO75807 674 aaPredicted RBP16.92■□□□□ 0.3
SLC6A1-201ENST00000287766 TSPY4P0CV99 314 aa16.92■□□□□ 0.3
SLC6A1-201ENST00000287766 TSPY10P0CW01 314 aa16.92■□□□□ 0.3
SLC6A1-201ENST00000287766 CCDC136Q96JN2 1154 aa16.92■□□□□ 0.3
SLC6A1-201ENST00000287766 KIF21BO75037 1637 aa16.91■□□□□ 0.3
SLC6A1-201ENST00000287766 CFDP1Q9UEE9 299 aaPredicted RBP16.9■□□□□ 0.3
SLC6A1-201ENST00000287766 EIF4G1Q04637 1599 aaKnown RBP16.9■□□□□ 0.3
SLC6A1-201ENST00000287766 ARHGAP35Q9NRY4 1499 aa16.89■□□□□ 0.29
SLC6A1-201ENST00000287766 HSPA5P11021 654 aaKnown RBP16.89■□□□□ 0.29
SLC6A1-201ENST00000287766 CADPSQ9ULU8 1353 aa16.87■□□□□ 0.29
SLC6A1-201ENST00000287766 TSHZ2Q9NRE2 1034 aa16.84■□□□□ 0.29
SLC6A1-201ENST00000287766 IGF1RP08069 1367 aa16.84■□□□□ 0.29
SLC6A1-201ENST00000287766 B4GALNT3Q6L9W6 998 aa16.84■□□□□ 0.29
SLC6A1-201ENST00000287766 ARAP1Q96P48 1450 aa16.83■□□□□ 0.28
SLC6A1-201ENST00000287766 CANXP27824 592 aaKnown RBP16.82■□□□□ 0.28
SLC6A1-201ENST00000287766 TIMELESSQ9UNS1 1208 aa16.81■□□□□ 0.28
SLC6A1-201ENST00000287766 CHGAP10645 457 aaKnown RBP16.81■□□□□ 0.28
SLC6A1-201ENST00000287766 PLEKHD1A6NEE1 506 aa16.8■□□□□ 0.28
SLC6A1-201ENST00000287766 SENP3Q9H4L4 574 aaPredicted RBP16.8■□□□□ 0.28
SLC6A1-201ENST00000287766 CARD11Q9BXL7 1154 aa16.79■□□□□ 0.28
SLC6A1-201ENST00000287766 CCER2I3L3R5 266 aa16.78■□□□□ 0.28
SLC6A1-201ENST00000287766 PHLDB1Q86UU1 1377 aa16.78■□□□□ 0.28
SLC6A1-201ENST00000287766 ANP32BQ92688 251 aaKnown RBP16.77■□□□□ 0.28
SLC6A1-201ENST00000287766 MPHOSPH9Q99550 1183 aa16.77■□□□□ 0.28
SLC6A1-201ENST00000287766 RBM19Q9Y4C8 960 aaKnown RBP16.77■□□□□ 0.27
SLC6A1-201ENST00000287766 L3MBTL2Q969R5 705 aa16.76■□□□□ 0.27
SLC6A1-201ENST00000287766 RAD54L2Q9Y4B4 1467 aa16.73■□□□□ 0.27
SLC6A1-201ENST00000287766 FMN1Q68DA7 1419 aa16.72■□□□□ 0.27
SLC6A1-201ENST00000287766 FGD5Q6ZNL6 1462 aa16.72■□□□□ 0.27
SLC6A1-201ENST00000287766 HSP90AA1P07900 732 aaKnown RBP16.71■□□□□ 0.26
SLC6A1-201ENST00000287766 DCAF11Q8TEB1 546 aa16.7■□□□□ 0.26
SLC6A1-201ENST00000287766 PKD2Q13563 968 aa16.69■□□□□ 0.26
SLC6A1-201ENST00000287766 PPP4R2Q9NY27 417 aa16.69■□□□□ 0.26
SLC6A1-201ENST00000287766 FANCD2Q9BXW9 1451 aa16.68■□□□□ 0.26
SLC6A1-201ENST00000287766 NEFMP07197 916 aa16.68■□□□□ 0.26
SLC6A1-201ENST00000287766 PRXQ9BXM0 1461 aa16.67■□□□□ 0.26
SLC6A1-201ENST00000287766 DEKP35659 375 aaKnown RBP16.65■□□□□ 0.26
SLC6A1-201ENST00000287766 CC2D1BQ5T0F9 858 aaKnown RBP16.65■□□□□ 0.26
SLC6A1-201ENST00000287766 WDR43Q15061 677 aaKnown RBP eCLIP16.64■□□□□ 0.25
SLC6A1-201ENST00000287766 NCAPD3P42695 1498 aa16.63■□□□□ 0.25
SLC6A1-201ENST00000287766 UPF2Q9HAU5 1272 aaKnown RBP16.62■□□□□ 0.25
SLC6A1-201ENST00000287766 CUX1P39880 1505 aa16.62■□□□□ 0.25
SLC6A1-201ENST00000287766 LAS1LQ9Y4W2 734 aaKnown RBP16.62■□□□□ 0.25
SLC6A1-201ENST00000287766 LRRC9Q6ZRR7 1453 aa16.62■□□□□ 0.25
SLC6A1-201ENST00000287766 RRBP1Q9P2E9 1410 aaKnown RBP16.61■□□□□ 0.25
SLC6A1-201ENST00000287766 CCDC18Q5T9S5 1454 aa16.6■□□□□ 0.25
SLC6A1-201ENST00000287766 BICRAQ9NZM4 1560 aa16.59■□□□□ 0.25
SLC6A1-201ENST00000287766 TOP2BQ02880 1626 aa16.59■□□□□ 0.25
SLC6A1-201ENST00000287766 ZNF644Q9H582 1327 aaPredicted RBP16.58■□□□□ 0.24
SLC6A1-201ENST00000287766 PDS5BQ9NTI5 1447 aa16.57■□□□□ 0.24
SLC6A1-201ENST00000287766 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.56■□□□□ 0.24
SLC6A1-201ENST00000287766 ERICH3Q5RHP9 1530 aa16.56■□□□□ 0.24
SLC6A1-201ENST00000287766 CFTRP13569 1480 aa16.55■□□□□ 0.24
SLC6A1-201ENST00000287766 ERICH6BQ5W0A0 696 aa16.55■□□□□ 0.24
SLC6A1-201ENST00000287766 FGD6Q6ZV73 1430 aa16.54■□□□□ 0.24
SLC6A1-201ENST00000287766 NOP58Q9Y2X3 529 aaKnown RBP16.54■□□□□ 0.24
SLC6A1-201ENST00000287766 NUP155O75694 1391 aa16.53■□□□□ 0.24
SLC6A1-201ENST00000287766 ERCC6Q03468 1493 aa16.53■□□□□ 0.24
SLC6A1-201ENST00000287766 HNRNPMP52272 730 aaKnown RBP eCLIP16.52■□□□□ 0.24
SLC6A1-201ENST00000287766 NAP1L5Q96NT1 182 aaPredicted RBP16.52■□□□□ 0.24
SLC6A1-201ENST00000287766 NEUROD2Q15784 382 aa16.51■□□□□ 0.23
SLC6A1-201ENST00000287766 PRKRIP1Q9H875 184 aaPredicted RBP16.51■□□□□ 0.23
SLC6A1-201ENST00000287766 NESP48681 1621 aa16.51■□□□□ 0.23
SLC6A1-201ENST00000287766 KNSTRNQ9Y448 316 aa16.5■□□□□ 0.23
SLC6A1-201ENST00000287766 TNNT2P45379 298 aaPredicted RBP16.5■□□□□ 0.23
SLC6A1-201ENST00000287766 TRIM44Q96DX7 344 aaPredicted RBP16.5■□□□□ 0.23
SLC6A1-201ENST00000287766 WASHC2AQ641Q2 1341 aa16.47■□□□□ 0.23
SLC6A1-201ENST00000287766 WDR97A6NE52 1622 aa16.46■□□□□ 0.23
SLC6A1-201ENST00000287766 GAPVD1Q14C86 1478 aa16.46■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms