RNA–Protein interactions for RNA: ENST00000279550.11

YBX3-202, Transcript of Y-box binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene YBX3, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-202ENST00000279550 CTTNBP2Q8WZ74 1663 aa32.87■■■□□ 2.85
YBX3-202ENST00000279550 CLIP1P30622 1438 aa32.87■■■□□ 2.85
YBX3-202ENST00000279550 PPARGC1BQ86YN6 1023 aaKnown RBP32.85■■■□□ 2.85
YBX3-202ENST00000279550 FBLN2P98095 1184 aa32.84■■■□□ 2.85
YBX3-202ENST00000279550 RANGAP1P46060 587 aaPredicted RBP32.83■■■□□ 2.85
YBX3-202ENST00000279550 NUP160Q12769 1436 aa32.71■■■□□ 2.83
YBX3-202ENST00000279550 CEP170Q5SW79 1584 aa32.71■■■□□ 2.83
YBX3-202ENST00000279550 HRCP23327 699 aa32.7■■■□□ 2.83
YBX3-202ENST00000279550 KIAA0586Q9BVV6 1533 aa32.69■■■□□ 2.82
YBX3-202ENST00000279550 IQGAP2Q13576 1575 aa32.69■■■□□ 2.82
YBX3-202ENST00000279550 CHD1O14646 1710 aa32.69■■■□□ 2.82
YBX3-202ENST00000279550 ARHGAP35Q9NRY4 1499 aa32.68■■■□□ 2.82
YBX3-202ENST00000279550 VPS8Q8N3P4 1428 aa32.6■■■□□ 2.81
YBX3-202ENST00000279550 EFCAB5A4FU69 1503 aa32.6■■■□□ 2.81
YBX3-202ENST00000279550 ARAP1Q96P48 1450 aa32.6■■■□□ 2.81
YBX3-202ENST00000279550 SAMD9Q5K651 1589 aa32.53■■■□□ 2.8
YBX3-202ENST00000279550 UGGT2Q9NYU1 1516 aa32.53■■■□□ 2.8
YBX3-202ENST00000279550 TTBK1Q5TCY1 1321 aaPredicted RBP32.5■■■□□ 2.79
YBX3-202ENST00000279550 P3H3Q8IVL6 736 aa32.48■■■□□ 2.79
YBX3-202ENST00000279550 FHOD3Q2V2M9 1422 aa32.46■■■□□ 2.79
YBX3-202ENST00000279550 JPH4Q96JJ6 628 aa32.43■■■□□ 2.78
YBX3-202ENST00000279550 DISP1Q96F81 1524 aa32.39■■■□□ 2.78
YBX3-202ENST00000279550 KIAA0556O60303 1618 aa32.36■■■□□ 2.77
YBX3-202ENST00000279550 CLASP1Q7Z460 1538 aa32.35■■■□□ 2.77
YBX3-202ENST00000279550 FMN1Q68DA7 1419 aa32.31■■■□□ 2.76
YBX3-202ENST00000279550 CARMIL2Q6F5E8 1435 aa32.29■■■□□ 2.76
YBX3-202ENST00000279550 SHROOM2Q13796 1616 aa32.29■■■□□ 2.76
YBX3-202ENST00000279550 PRG4Q92954 1404 aaPredicted RBP32.25■■■□□ 2.75
YBX3-202ENST00000279550 OSCARQ8IYS5 282 aa32.23■■■□□ 2.75
YBX3-202ENST00000279550 PCF11O94913 1555 aaKnown RBP32.21■■■□□ 2.75
YBX3-202ENST00000279550 APLP2Q06481 763 aa32.2■■■□□ 2.75
YBX3-202ENST00000279550 CASKIN1Q8WXD9 1431 aa32.18■■■□□ 2.74
YBX3-202ENST00000279550 FYCO1Q9BQS8 1478 aa32.18■■■□□ 2.74
YBX3-202ENST00000279550 ATP1B4Q9UN42 357 aaPredicted RBP32.08■■■□□ 2.73
YBX3-202ENST00000279550 ERCC6L2Q5T890 1561 aa32.08■■■□□ 2.73
YBX3-202ENST00000279550 MAP3K1Q13233 1512 aa32.04■■■□□ 2.72
YBX3-202ENST00000279550 KANK4Q5T7N3 995 aaPredicted RBP32.03■■■□□ 2.72
YBX3-202ENST00000279550 PTPRGP23470 1445 aa32.01■■■□□ 2.71
YBX3-202ENST00000279550 TIAM1Q13009 1591 aa32.01■■■□□ 2.71
YBX3-202ENST00000279550 HECW1Q76N89 1606 aa32■■■□□ 2.71
YBX3-202ENST00000279550 RAPGEF6Q8TEU7 1601 aa31.98■■■□□ 2.71
YBX3-202ENST00000279550 PLB1Q6P1J6 1458 aa31.98■■■□□ 2.71
YBX3-202ENST00000279550 CFAP43Q8NDM7 1665 aa31.96■■■□□ 2.71
YBX3-202ENST00000279550 LRRIQ1Q96JM4 1722 aa31.94■■■□□ 2.7
YBX3-202ENST00000279550 ABCA8O94911 1581 aa31.92■■■□□ 2.7
YBX3-202ENST00000279550 NUP153P49790 1475 aaKnown RBP31.91■■■□□ 2.7
YBX3-202ENST00000279550 CCDC18Q5T9S5 1454 aa31.91■■■□□ 2.7
YBX3-202ENST00000279550 EPRSP07814 1512 aaKnown RBP31.9■■■□□ 2.7
YBX3-202ENST00000279550 ZEB1P37275 1124 aaPredicted RBP31.89■■■□□ 2.7
YBX3-202ENST00000279550 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.87■■■□□ 2.69
YBX3-202ENST00000279550 LRRC9Q6ZRR7 1453 aa31.87■■■□□ 2.69
YBX3-202ENST00000279550 CDK13Q14004 1512 aaKnown RBP31.83■■■□□ 2.69
YBX3-202ENST00000279550 UACAQ9BZF9 1416 aa31.82■■■□□ 2.68
YBX3-202ENST00000279550 ARID3CA6NKF2 412 aa31.8■■■□□ 2.68
YBX3-202ENST00000279550 HNRNPUL2Q1KMD3 747 aaKnown RBP31.78■■■□□ 2.68
YBX3-202ENST00000279550 MTUS2Q5JR59 1369 aa31.75■■■□□ 2.67
YBX3-202ENST00000279550 ABCC2Q92887 1545 aa31.74■■■□□ 2.67
YBX3-202ENST00000279550 CCER1Q8TC90 406 aaPredicted RBP31.73■■■□□ 2.67
YBX3-202ENST00000279550 ARHGEF11O15085 1522 aa31.71■■■□□ 2.67
YBX3-202ENST00000279550 RRBP1Q9P2E9 1410 aaKnown RBP31.71■■■□□ 2.67
YBX3-202ENST00000279550 MAGI3Q5TCQ9 1506 aa31.71■■■□□ 2.67
YBX3-202ENST00000279550 ATP10BO94823 1461 aa31.7■■■□□ 2.66
YBX3-202ENST00000279550 EHBP1L1Q8N3D4 1523 aa31.7■■■□□ 2.66
YBX3-202ENST00000279550 UHRF1BP1LA0JNW5 1464 aa31.69■■■□□ 2.66
YBX3-202ENST00000279550 CDK11AQ9UQ88 783 aaPredicted RBP31.66■■■□□ 2.66
YBX3-202ENST00000279550 ADCY10Q96PN6 1610 aa31.59■■■□□ 2.65
YBX3-202ENST00000279550 SUPT6HQ7KZ85 1726 aaKnown RBP31.57■■■□□ 2.64
YBX3-202ENST00000279550 CCNB3Q8WWL7 1395 aa31.57■■■□□ 2.64
YBX3-202ENST00000279550 RIMBP3CA6NJZ7 1639 aa31.57■■■□□ 2.64
YBX3-202ENST00000279550 RIMBP3BA6NNM3 1639 aa31.57■■■□□ 2.64
YBX3-202ENST00000279550 RIMBP3Q9UFD9 1639 aa31.57■■■□□ 2.64
YBX3-202ENST00000279550 KDM5BQ9UGL1 1544 aa31.57■■■□□ 2.64
YBX3-202ENST00000279550 TROQ12816 1431 aaPredicted RBP31.56■■■□□ 2.64
YBX3-202ENST00000279550 PHLDB1Q86UU1 1377 aa31.55■■■□□ 2.64
YBX3-202ENST00000279550 NCOA2Q15596 1464 aa31.55■■■□□ 2.64
YBX3-202ENST00000279550 PLEKHD1A6NEE1 506 aa31.53■■■□□ 2.64
YBX3-202ENST00000279550 ZCCHC11Q5TAX3 1644 aaKnown RBP31.51■■■□□ 2.63
YBX3-202ENST00000279550 MYOM3Q5VTT5 1437 aa31.41■■■□□ 2.62
YBX3-202ENST00000279550 CYB5RLQ6IPT4 315 aa31.41■■■□□ 2.62
YBX3-202ENST00000279550 KIF14Q15058 1648 aa31.4■■■□□ 2.62
YBX3-202ENST00000279550 FGD6Q6ZV73 1430 aa31.36■■■□□ 2.61
YBX3-202ENST00000279550 NPM1P06748 294 aaKnown RBP eCLIP31.32■■■□□ 2.61
YBX3-202ENST00000279550 ITGAEP38570 1179 aa31.3■■■□□ 2.6
YBX3-202ENST00000279550 ABCC10Q5T3U5 1492 aa31.3■■■□□ 2.6
YBX3-202ENST00000279550 WDR7Q9Y4E6 1490 aa31.28■■■□□ 2.6
YBX3-202ENST00000279550 MIA2Q96PC5 1412 aa31.27■■■□□ 2.6
YBX3-202ENST00000279550 ASXL2Q76L83 1435 aa31.26■■■□□ 2.59
YBX3-202ENST00000279550 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.25■■■□□ 2.59
YBX3-202ENST00000279550 FAM50AQ14320 339 aaKnown RBP31.25■■■□□ 2.59
YBX3-202ENST00000279550 GPATCH8Q9UKJ3 1502 aaKnown RBP31.25■■■□□ 2.59
YBX3-202ENST00000279550 KCNH8Q96L42 1107 aa31.24■■■□□ 2.59
YBX3-202ENST00000279550 ITSN2Q9NZM3 1697 aa31.22■■■□□ 2.59
YBX3-202ENST00000279550 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.22■■■□□ 2.59
YBX3-202ENST00000279550 PTPN23Q9H3S7 1636 aa31.22■■■□□ 2.59
YBX3-202ENST00000279550 TTC37Q6PGP7 1564 aa31.19■■■□□ 2.58
YBX3-202ENST00000279550 TCOF1Q13428 1488 aaKnown RBP31.19■■■□□ 2.58
YBX3-202ENST00000279550 DHX57Q6P158 1386 aaKnown RBP31.18■■■□□ 2.58
YBX3-202ENST00000279550 CDC42BPAQ5VT25 1732 aa31.18■■■□□ 2.58
YBX3-202ENST00000279550 CFDP1Q9UEE9 299 aaPredicted RBP31.16■■■□□ 2.58
YBX3-202ENST00000279550 MAPKBP1O60336 1514 aa31.12■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms