RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 JPH4Q96JJ6 628 aa22.27■■□□□ 1.16
CD44-203ENST00000278386 KIF13AQ9H1H9 1805 aa22.24■■□□□ 1.15
CD44-203ENST00000278386 IGF1RP08069 1367 aa22.23■■□□□ 1.15
CD44-203ENST00000278386 KIAA0586Q9BVV6 1533 aa22.21■■□□□ 1.15
CD44-203ENST00000278386 ADCY10Q96PN6 1610 aa22.17■■□□□ 1.14
CD44-203ENST00000278386 CARMIL1Q5VZK9 1371 aa22.13■■□□□ 1.13
CD44-203ENST00000278386 MAPKBP1O60336 1514 aa22.1■■□□□ 1.13
CD44-203ENST00000278386 IQGAP2Q13576 1575 aa22.09■■□□□ 1.13
CD44-203ENST00000278386 NPM1P06748 294 aaKnown RBP eCLIP22.08■■□□□ 1.13
CD44-203ENST00000278386 DIP2BQ9P265 1576 aa22.06■■□□□ 1.12
CD44-203ENST00000278386 ABCC10Q5T3U5 1492 aa22.03■■□□□ 1.12
CD44-203ENST00000278386 CARMIL2Q6F5E8 1435 aa22.01■■□□□ 1.11
CD44-203ENST00000278386 TTBK1Q5TCY1 1321 aaPredicted RBP22.01■■□□□ 1.11
CD44-203ENST00000278386 TSPOAP1O95153 1857 aa21.99■■□□□ 1.11
CD44-203ENST00000278386 PTPRGP23470 1445 aa21.98■■□□□ 1.11
CD44-203ENST00000278386 FAM69CQ0P6D2 419 aa21.98■■□□□ 1.11
CD44-203ENST00000278386 RAPGEF2Q9Y4G8 1499 aa21.97■■□□□ 1.11
CD44-203ENST00000278386 AEBP2Q6ZN18 517 aaPredicted RBP21.97■■□□□ 1.11
CD44-203ENST00000278386 TNIKQ9UKE5 1360 aa21.97■■□□□ 1.11
CD44-203ENST00000278386 CTTNBP2Q8WZ74 1663 aa21.95■■□□□ 1.1
CD44-203ENST00000278386 DISP1Q96F81 1524 aa21.91■■□□□ 1.1
CD44-203ENST00000278386 KIAA0556O60303 1618 aa21.91■■□□□ 1.1
CD44-203ENST00000278386 ABCC2Q92887 1545 aa21.9■■□□□ 1.1
CD44-203ENST00000278386 UGGT2Q9NYU1 1516 aa21.9■■□□□ 1.1
CD44-203ENST00000278386 KDM6BO15054 1643 aa21.89■■□□□ 1.09
CD44-203ENST00000278386 UHRF1BP1LA0JNW5 1464 aa21.84■■□□□ 1.09
CD44-203ENST00000278386 UACAQ9BZF9 1416 aa21.84■■□□□ 1.09
CD44-203ENST00000278386 ASXL2Q76L83 1435 aa21.82■■□□□ 1.08
CD44-203ENST00000278386 ZCCHC11Q5TAX3 1644 aaKnown RBP21.81■■□□□ 1.08
CD44-203ENST00000278386 PLB1Q6P1J6 1458 aa21.81■■□□□ 1.08
CD44-203ENST00000278386 PPRC1Q5VV67 1664 aaKnown RBP21.78■■□□□ 1.08
CD44-203ENST00000278386 GLI2P10070 1586 aa21.77■■□□□ 1.08
CD44-203ENST00000278386 KDM5BQ9UGL1 1544 aa21.75■■□□□ 1.07
CD44-203ENST00000278386 GOLGA3Q08378 1498 aa21.73■■□□□ 1.07
CD44-203ENST00000278386 PRXQ9BXM0 1461 aa21.72■■□□□ 1.07
CD44-203ENST00000278386 MAP3K4Q9Y6R4 1608 aa21.71■■□□□ 1.07
CD44-203ENST00000278386 EPRSP07814 1512 aaKnown RBP21.7■■□□□ 1.06
CD44-203ENST00000278386 ABCA8O94911 1581 aa21.65■■□□□ 1.06
CD44-203ENST00000278386 WDR7Q9Y4E6 1490 aa21.64■■□□□ 1.05
CD44-203ENST00000278386 TEX14Q8IWB6 1497 aa21.61■■□□□ 1.05
CD44-203ENST00000278386 CFAP43Q8NDM7 1665 aa21.59■■□□□ 1.05
CD44-203ENST00000278386 SAMD9Q5K651 1589 aa21.54■■□□□ 1.04
CD44-203ENST00000278386 CSRNP3Q8WYN3 585 aa21.51■■□□□ 1.03
CD44-203ENST00000278386 EEA1Q15075 1411 aa21.51■■□□□ 1.03
CD44-203ENST00000278386 P3H3Q8IVL6 736 aa21.5■■□□□ 1.03
CD44-203ENST00000278386 COL17A1Q9UMD9 1497 aaPredicted RBP21.5■■□□□ 1.03
CD44-203ENST00000278386 FAM9AQ8IZU1 332 aaPredicted RBP21.49■■□□□ 1.03
CD44-203ENST00000278386 RAPGEF6Q8TEU7 1601 aa21.48■■□□□ 1.03
CD44-203ENST00000278386 KDM4FA0A1W2PPD8 638 aa21.48■■□□□ 1.03
CD44-203ENST00000278386 CD109Q6YHK3 1445 aa21.46■■□□□ 1.03
CD44-203ENST00000278386 ARID3CA6NKF2 412 aa21.46■■□□□ 1.03
CD44-203ENST00000278386 KCNH8Q96L42 1107 aa21.46■■□□□ 1.03
CD44-203ENST00000278386 MAGI3Q5TCQ9 1506 aa21.45■■□□□ 1.02
CD44-203ENST00000278386 ADGRL1O94910 1474 aa21.44■■□□□ 1.02
CD44-203ENST00000278386 KIF21BO75037 1637 aa21.41■■□□□ 1.02
CD44-203ENST00000278386 ATP10BO94823 1461 aa21.41■■□□□ 1.02
CD44-203ENST00000278386 RANGAP1P46060 587 aaPredicted RBP21.39■■□□□ 1.01
CD44-203ENST00000278386 ABCA9Q8IUA7 1624 aa21.38■■□□□ 1.01
CD44-203ENST00000278386 FHOD3Q2V2M9 1422 aa21.38■■□□□ 1.01
CD44-203ENST00000278386 EFCAB5A4FU69 1503 aa21.34■■□□□ 1.01
CD44-203ENST00000278386 NUP153P49790 1475 aaKnown RBP21.32■■□□□ 1
CD44-203ENST00000278386 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.32■■□□□ 1
CD44-203ENST00000278386 HNRNPUL2Q1KMD3 747 aaKnown RBP21.32■■□□□ 1
CD44-203ENST00000278386 ARAP3Q8WWN8 1544 aa21.27■■□□□ 1
CD44-203ENST00000278386 NEO1Q92859 1461 aa21.22■□□□□ 0.99
CD44-203ENST00000278386 EHMT2Q96KQ7 1210 aa21.22■□□□□ 0.99
CD44-203ENST00000278386 CFAP74Q9C0B2 1584 aa21.2■□□□□ 0.98
CD44-203ENST00000278386 PHLDB1Q86UU1 1377 aa21.2■□□□□ 0.98
CD44-203ENST00000278386 FRMPD1Q5SYB0 1578 aa21.19■□□□□ 0.98
CD44-203ENST00000278386 CDK13Q14004 1512 aaKnown RBP21.18■□□□□ 0.98
CD44-203ENST00000278386 TTC37Q6PGP7 1564 aa21.18■□□□□ 0.98
CD44-203ENST00000278386 HECW2Q9P2P5 1572 aa21.17■□□□□ 0.98
CD44-203ENST00000278386 HECW1Q76N89 1606 aa21.17■□□□□ 0.98
CD44-203ENST00000278386 UBTFP17480 764 aaKnown RBP21.16■□□□□ 0.98
CD44-203ENST00000278386 PLEKHD1A6NEE1 506 aa21.15■□□□□ 0.98
CD44-203ENST00000278386 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.14■□□□□ 0.98
CD44-203ENST00000278386 CHIC1Q5VXU3 224 aa21.14■□□□□ 0.97
CD44-203ENST00000278386 RICTORQ6R327 1708 aa21.13■□□□□ 0.97
CD44-203ENST00000278386 RAPGEF3O95398 923 aa21.12■□□□□ 0.97
CD44-203ENST00000278386 ARHGEF40Q8TER5 1519 aa21.1■□□□□ 0.97
CD44-203ENST00000278386 FANCAO15360 1455 aa21.1■□□□□ 0.97
CD44-203ENST00000278386 ARHGAP35Q9NRY4 1499 aa21.1■□□□□ 0.97
CD44-203ENST00000278386 FMN1Q68DA7 1419 aa21.1■□□□□ 0.97
CD44-203ENST00000278386 BCORL1Q5H9F3 1711 aa21.08■□□□□ 0.97
CD44-203ENST00000278386 ADAMTSL3P82987 1691 aa21.08■□□□□ 0.96
CD44-203ENST00000278386 DENND4BO75064 1496 aaPredicted RBP21.07■□□□□ 0.96
CD44-203ENST00000278386 MYO5CQ9NQX4 1742 aa21.07■□□□□ 0.96
CD44-203ENST00000278386 AKNAQ7Z591 1439 aa21.06■□□□□ 0.96
CD44-203ENST00000278386 ATP1B4Q9UN42 357 aaPredicted RBP21.06■□□□□ 0.96
CD44-203ENST00000278386 LRRIQ1Q96JM4 1722 aa21.04■□□□□ 0.96
CD44-203ENST00000278386 MADDQ8WXG6 1647 aa21.04■□□□□ 0.96
CD44-203ENST00000278386 KIF14Q15058 1648 aa21.03■□□□□ 0.96
CD44-203ENST00000278386 ZMYM4Q5VZL5 1548 aa21.01■□□□□ 0.95
CD44-203ENST00000278386 ARID4BQ4LE39 1312 aaPredicted RBP21.01■□□□□ 0.95
CD44-203ENST00000278386 RIMS1Q86UR5 1692 aaKnown RBP20.99■□□□□ 0.95
CD44-203ENST00000278386 ZFYVE16Q7Z3T8 1539 aa20.99■□□□□ 0.95
CD44-203ENST00000278386 PTPRMP28827 1452 aa20.99■□□□□ 0.95
CD44-203ENST00000278386 PCF11O94913 1555 aaKnown RBP20.97■□□□□ 0.95
CD44-203ENST00000278386 PLCH2O75038 1416 aa20.95■□□□□ 0.94
CD44-203ENST00000278386 CDK11AQ9UQ88 783 aaPredicted RBP20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms