RNA–Protein interactions for RNA: ENST00000277198.6

C9orf3-201, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2 BASIC

Gene C9orf3, Length 1,966 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-201ENST00000277198 ARAP1Q96P48 1450 aa20.11■□□□□ 0.81
C9orf3-201ENST00000277198 NUP160Q12769 1436 aa20.1■□□□□ 0.81
C9orf3-201ENST00000277198 CYB5RLQ6IPT4 315 aa20.1■□□□□ 0.81
C9orf3-201ENST00000277198 RUSC2Q8N2Y8 1516 aa20.06■□□□□ 0.8
C9orf3-201ENST00000277198 EEA1Q15075 1411 aa20.04■□□□□ 0.8
C9orf3-201ENST00000277198 ERCC6L2Q5T890 1561 aa20.03■□□□□ 0.8
C9orf3-201ENST00000277198 CARMIL1Q5VZK9 1371 aa19.97■□□□□ 0.79
C9orf3-201ENST00000277198 CUL7Q14999 1698 aa19.97■□□□□ 0.79
C9orf3-201ENST00000277198 EHMT2Q96KQ7 1210 aa19.95■□□□□ 0.78
C9orf3-201ENST00000277198 SHROOM2Q13796 1616 aa19.94■□□□□ 0.78
C9orf3-201ENST00000277198 TNIKQ9UKE5 1360 aa19.92■□□□□ 0.78
C9orf3-201ENST00000277198 JPH4Q96JJ6 628 aa19.9■□□□□ 0.78
C9orf3-201ENST00000277198 PRG4Q92954 1404 aaPredicted RBP19.89■□□□□ 0.77
C9orf3-201ENST00000277198 KIAA0586Q9BVV6 1533 aa19.85■□□□□ 0.77
C9orf3-201ENST00000277198 CEP162Q5TB80 1403 aa19.85■□□□□ 0.77
C9orf3-201ENST00000277198 CSRNP3Q8WYN3 585 aa19.84■□□□□ 0.77
C9orf3-201ENST00000277198 RAPGEF2Q9Y4G8 1499 aa19.81■□□□□ 0.76
C9orf3-201ENST00000277198 GOLGA3Q08378 1498 aa19.77■□□□□ 0.75
C9orf3-201ENST00000277198 PRXQ9BXM0 1461 aa19.74■□□□□ 0.75
C9orf3-201ENST00000277198 IQGAP2Q13576 1575 aa19.73■□□□□ 0.75
C9orf3-201ENST00000277198 TRHP20396 242 aaPredicted RBP19.71■□□□□ 0.75
C9orf3-201ENST00000277198 TTBK1Q5TCY1 1321 aaPredicted RBP19.7■□□□□ 0.74
C9orf3-201ENST00000277198 UBTFP17480 764 aaKnown RBP19.66■□□□□ 0.74
C9orf3-201ENST00000277198 CCER1Q8TC90 406 aaPredicted RBP19.66■□□□□ 0.74
C9orf3-201ENST00000277198 DISP1Q96F81 1524 aa19.66■□□□□ 0.74
C9orf3-201ENST00000277198 KIF21BO75037 1637 aa19.65■□□□□ 0.74
C9orf3-201ENST00000277198 UGGT2Q9NYU1 1516 aa19.62■□□□□ 0.73
C9orf3-201ENST00000277198 ADCY10Q96PN6 1610 aa19.61■□□□□ 0.73
C9orf3-201ENST00000277198 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.61■□□□□ 0.73
C9orf3-201ENST00000277198 PTPRGP23470 1445 aa19.6■□□□□ 0.73
C9orf3-201ENST00000277198 CARMIL2Q6F5E8 1435 aa19.6■□□□□ 0.73
C9orf3-201ENST00000277198 CTTNBP2Q8WZ74 1663 aa19.6■□□□□ 0.73
C9orf3-201ENST00000277198 KIAA0556O60303 1618 aa19.56■□□□□ 0.72
C9orf3-201ENST00000277198 RANGAP1P46060 587 aaPredicted RBP19.49■□□□□ 0.71
C9orf3-201ENST00000277198 P3H3Q8IVL6 736 aa19.49■□□□□ 0.71
C9orf3-201ENST00000277198 CLIP1P30622 1438 aa19.49■□□□□ 0.71
C9orf3-201ENST00000277198 UACAQ9BZF9 1416 aa19.47■□□□□ 0.71
C9orf3-201ENST00000277198 NPM1P06748 294 aaKnown RBP eCLIP19.46■□□□□ 0.71
C9orf3-201ENST00000277198 VPS8Q8N3P4 1428 aa19.46■□□□□ 0.71
C9orf3-201ENST00000277198 PLB1Q6P1J6 1458 aa19.45■□□□□ 0.7
C9orf3-201ENST00000277198 MAPKBP1O60336 1514 aa19.44■□□□□ 0.7
C9orf3-201ENST00000277198 ABCC2Q92887 1545 aa19.44■□□□□ 0.7
C9orf3-201ENST00000277198 UHRF1BP1LA0JNW5 1464 aa19.42■□□□□ 0.7
C9orf3-201ENST00000277198 KIF13AQ9H1H9 1805 aa19.41■□□□□ 0.7
C9orf3-201ENST00000277198 ABCC10Q5T3U5 1492 aa19.4■□□□□ 0.7
C9orf3-201ENST00000277198 FAM69CQ0P6D2 419 aa19.39■□□□□ 0.7
C9orf3-201ENST00000277198 SAMD9Q5K651 1589 aa19.38■□□□□ 0.69
C9orf3-201ENST00000277198 DIP2BQ9P265 1576 aa19.37■□□□□ 0.69
C9orf3-201ENST00000277198 ASXL2Q76L83 1435 aa19.36■□□□□ 0.69
C9orf3-201ENST00000277198 ABCA8O94911 1581 aa19.36■□□□□ 0.69
C9orf3-201ENST00000277198 KDM5BQ9UGL1 1544 aa19.36■□□□□ 0.69
C9orf3-201ENST00000277198 ARID3CA6NKF2 412 aa19.35■□□□□ 0.69
C9orf3-201ENST00000277198 FHOD3Q2V2M9 1422 aa19.34■□□□□ 0.69
C9orf3-201ENST00000277198 ZCCHC11Q5TAX3 1644 aaKnown RBP19.33■□□□□ 0.69
C9orf3-201ENST00000277198 APLP2Q06481 763 aa19.33■□□□□ 0.68
C9orf3-201ENST00000277198 DIEXFQ68CQ4 756 aaKnown RBP19.32■□□□□ 0.68
C9orf3-201ENST00000277198 SCAF1Q9H7N4 1312 aaKnown RBP19.26■□□□□ 0.67
C9orf3-201ENST00000277198 TSPOAP1O95153 1857 aa19.24■□□□□ 0.67
C9orf3-201ENST00000277198 EPRSP07814 1512 aaKnown RBP19.24■□□□□ 0.67
C9orf3-201ENST00000277198 ZNF316A6NFI3 1004 aaPredicted RBP19.23■□□□□ 0.67
C9orf3-201ENST00000277198 ATP10BO94823 1461 aa19.22■□□□□ 0.67
C9orf3-201ENST00000277198 EFCAB5A4FU69 1503 aa19.22■□□□□ 0.67
C9orf3-201ENST00000277198 ARHGAP35Q9NRY4 1499 aa19.22■□□□□ 0.67
C9orf3-201ENST00000277198 WDR7Q9Y4E6 1490 aa19.22■□□□□ 0.67
C9orf3-201ENST00000277198 PELP1Q8IZL8 1130 aaKnown RBP19.22■□□□□ 0.67
C9orf3-201ENST00000277198 RAPGEF6Q8TEU7 1601 aa19.21■□□□□ 0.67
C9orf3-201ENST00000277198 NUP153P49790 1475 aaKnown RBP19.2■□□□□ 0.66
C9orf3-201ENST00000277198 ACIN1Q9UKV3 1341 aaKnown RBP19.2■□□□□ 0.66
C9orf3-201ENST00000277198 KCNH8Q96L42 1107 aa19.19■□□□□ 0.66
C9orf3-201ENST00000277198 GLI2P10070 1586 aa19.18■□□□□ 0.66
C9orf3-201ENST00000277198 CENPBP07199 599 aaPredicted RBP19.17■□□□□ 0.66
C9orf3-201ENST00000277198 PPRC1Q5VV67 1664 aaKnown RBP19.16■□□□□ 0.66
C9orf3-201ENST00000277198 CLSPNQ9HAW4 1339 aa19.16■□□□□ 0.66
C9orf3-201ENST00000277198 HNRNPUL2Q1KMD3 747 aaKnown RBP19.15■□□□□ 0.66
C9orf3-201ENST00000277198 MAP3K4Q9Y6R4 1608 aa19.13■□□□□ 0.65
C9orf3-201ENST00000277198 CDK13Q14004 1512 aaKnown RBP19.09■□□□□ 0.65
C9orf3-201ENST00000277198 KDM6BO15054 1643 aa19.07■□□□□ 0.64
C9orf3-201ENST00000277198 ATP1B4Q9UN42 357 aaPredicted RBP19.07■□□□□ 0.64
C9orf3-201ENST00000277198 NEUROD1Q13562 356 aa19.06■□□□□ 0.64
C9orf3-201ENST00000277198 COL17A1Q9UMD9 1497 aaPredicted RBP19.06■□□□□ 0.64
C9orf3-201ENST00000277198 CD109Q6YHK3 1445 aa19.06■□□□□ 0.64
C9orf3-201ENST00000277198 FMN1Q68DA7 1419 aa19.05■□□□□ 0.64
C9orf3-201ENST00000277198 RRBP1Q9P2E9 1410 aaKnown RBP19.04■□□□□ 0.64
C9orf3-201ENST00000277198 CFAP43Q8NDM7 1665 aa19.01■□□□□ 0.63
C9orf3-201ENST00000277198 TEX14Q8IWB6 1497 aa18.99■□□□□ 0.63
C9orf3-201ENST00000277198 HECW1Q76N89 1606 aa18.99■□□□□ 0.63
C9orf3-201ENST00000277198 MAGI3Q5TCQ9 1506 aa18.99■□□□□ 0.63
C9orf3-201ENST00000277198 PLEKHD1A6NEE1 506 aa18.99■□□□□ 0.63
C9orf3-201ENST00000277198 PCF11O94913 1555 aaKnown RBP18.99■□□□□ 0.63
C9orf3-201ENST00000277198 ABCA9Q8IUA7 1624 aa18.98■□□□□ 0.63
C9orf3-201ENST00000277198 LRRIQ1Q96JM4 1722 aa18.97■□□□□ 0.63
C9orf3-201ENST00000277198 MAP3K1Q13233 1512 aa18.97■□□□□ 0.63
C9orf3-201ENST00000277198 KANK4Q5T7N3 995 aaPredicted RBP18.96■□□□□ 0.63
C9orf3-201ENST00000277198 DHX57Q6P158 1386 aaKnown RBP18.96■□□□□ 0.63
C9orf3-201ENST00000277198 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.93■□□□□ 0.62
C9orf3-201ENST00000277198 CASKIN1Q8WXD9 1431 aa18.93■□□□□ 0.62
C9orf3-201ENST00000277198 TTC37Q6PGP7 1564 aa18.92■□□□□ 0.62
C9orf3-201ENST00000277198 CCNB3Q8WWL7 1395 aa18.91■□□□□ 0.62
C9orf3-201ENST00000277198 GTF3C3Q9Y5Q9 886 aa18.88■□□□□ 0.61
C9orf3-201ENST00000277198 KIF14Q15058 1648 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms