RNA–Protein interactions for RNA: ENST00000265641.9

CPT1A-201, Transcript of carnitine palmitoyltransferase 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPT1A, Length 5,232 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPT1A-201ENST00000265641 HSP90AA1P07900 732 aaKnown RBP14.21□□□□□ -0.14
CPT1A-201ENST00000265641 PABPN1Q86U42 306 aaKnown RBP eCLIP14.21□□□□□ -0.145e-6■■■■□ 22.2
CPT1A-201ENST00000265641 IRX6P78412 446 aaPredicted RBP14.19□□□□□ -0.14
CPT1A-201ENST00000265641 RTN4Q9NQC3 1192 aaKnown RBP14.18□□□□□ -0.14
CPT1A-201ENST00000265641 USP35Q9P2H5 1018 aa14.16□□□□□ -0.14
CPT1A-201ENST00000265641 PRKCSHP14314 528 aaPredicted RBP14.16□□□□□ -0.14
CPT1A-201ENST00000265641 SLC4A1APQ9BWU0 796 aaKnown RBP14.14□□□□□ -0.15
CPT1A-201ENST00000265641 GOLGA6L22H0YM25 854 aa14.14□□□□□ -0.15
CPT1A-201ENST00000265641 MRS2Q9HD23 443 aa14.12□□□□□ -0.15
CPT1A-201ENST00000265641 FANCIQ9NVI1 1328 aa14.11□□□□□ -0.15
CPT1A-201ENST00000265641 CCER2I3L3R5 266 aa14.11□□□□□ -0.15
CPT1A-201ENST00000265641 EEA1Q15075 1411 aa14.1□□□□□ -0.15
CPT1A-201ENST00000265641 CEP162Q5TB80 1403 aa14.06□□□□□ -0.16
CPT1A-201ENST00000265641 TMC1Q8TDI8 760 aa14.06□□□□□ -0.16
CPT1A-201ENST00000265641 PNNQ9H307 717 aaKnown RBP14.05□□□□□ -0.16
CPT1A-201ENST00000265641 CLIP1P30622 1438 aa14.03□□□□□ -0.16
CPT1A-201ENST00000265641 PTMSP20962 102 aa14.02□□□□□ -0.17
CPT1A-201ENST00000265641 LAS1LQ9Y4W2 734 aaKnown RBP14.02□□□□□ -0.17
CPT1A-201ENST00000265641 CECR2Q9BXF3 1484 aa14.02□□□□□ -0.17
CPT1A-201ENST00000265641 HIRIP3Q9BW71 556 aaPredicted RBP14.01□□□□□ -0.17
CPT1A-201ENST00000265641 HSP90AA2PQ14568 343 aaPredicted RBP14□□□□□ -0.17
CPT1A-201ENST00000265641 IPO9Q96P70 1041 aaKnown RBP14□□□□□ -0.17
CPT1A-201ENST00000265641 MROH2BQ7Z745 1585 aa14□□□□□ -0.17
CPT1A-201ENST00000265641 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.99□□□□□ -0.17
CPT1A-201ENST00000265641 P3H3Q8IVL6 736 aa13.98□□□□□ -0.17
CPT1A-201ENST00000265641 ARXQ96QS3 562 aa13.98□□□□□ -0.17
CPT1A-201ENST00000265641 EIF4G2P78344 907 aaKnown RBP eCLIP13.97□□□□□ -0.17
CPT1A-201ENST00000265641 SALL2Q9Y467 1007 aaPredicted RBP13.97□□□□□ -0.17
CPT1A-201ENST00000265641 ARID4BQ4LE39 1312 aaPredicted RBP13.97□□□□□ -0.17
CPT1A-201ENST00000265641 TIMELESSQ9UNS1 1208 aa13.97□□□□□ -0.17
CPT1A-201ENST00000265641 TNIKQ9UKE5 1360 aa13.96□□□□□ -0.17
CPT1A-201ENST00000265641 TOP2AP11388 1531 aaKnown RBP13.96□□□□□ -0.17
CPT1A-201ENST00000265641 MSNP26038 577 aaKnown RBP13.96□□□□□ -0.17
CPT1A-201ENST00000265641 PTMAP06454 111 aaKnown RBP13.95□□□□□ -0.18
CPT1A-201ENST00000265641 PKNOX2Q96KN3 472 aa13.94□□□□□ -0.18
CPT1A-201ENST00000265641 GOLGA3Q08378 1498 aa13.94□□□□□ -0.18
CPT1A-201ENST00000265641 BAZ1BQ9UIG0 1483 aaKnown RBP13.94□□□□□ -0.18
CPT1A-201ENST00000265641 TCERG1O14776 1098 aaKnown RBP13.94□□□□□ -0.18
CPT1A-201ENST00000265641 DNTTIP2Q5QJE6 756 aaKnown RBP13.94□□□□□ -0.18
CPT1A-201ENST00000265641 VSIG10Q8N0Z9 540 aa13.93□□□□□ -0.18
CPT1A-201ENST00000265641 CHAF1AQ13111 956 aaPredicted RBP13.91□□□□□ -0.18
CPT1A-201ENST00000265641 SMARCA2P51531 1590 aa13.9□□□□□ -0.18
CPT1A-201ENST00000265641 B4GALNT3Q6L9W6 998 aa13.9□□□□□ -0.18
CPT1A-201ENST00000265641 SMARCA4P51532 1647 aa13.87□□□□□ -0.19
CPT1A-201ENST00000265641 ADRA2BP18089 450 aa13.87□□□□□ -0.19
CPT1A-201ENST00000265641 WRNQ14191 1432 aaPredicted RBP eCLIP13.86□□□□□ -0.192e-10■■■■■ 91.9
CPT1A-201ENST00000265641 WIZO95785 1651 aa13.85□□□□□ -0.19
CPT1A-201ENST00000265641 SENP3Q9H4L4 574 aaPredicted RBP13.85□□□□□ -0.19
CPT1A-201ENST00000265641 GSE1Q14687 1217 aa13.83□□□□□ -0.19
CPT1A-201ENST00000265641 WDR43Q15061 677 aaKnown RBP eCLIP13.83□□□□□ -0.2
CPT1A-201ENST00000265641 GOLGA6L3A6NEY3 463 aa13.82□□□□□ -0.2
CPT1A-201ENST00000265641 CCDC88BA6NC98 1476 aa13.82□□□□□ -0.2
CPT1A-201ENST00000265641 CEP164Q9UPV0 1460 aa13.79□□□□□ -0.2
CPT1A-201ENST00000265641 MAP7D2Q96T17 732 aa13.79□□□□□ -0.2
CPT1A-201ENST00000265641 PODXL2Q9NZ53 605 aa13.79□□□□□ -0.2
CPT1A-201ENST00000265641 CHIC2Q9UKJ5 165 aa13.78□□□□□ -0.2
CPT1A-201ENST00000265641 MTERF4Q7Z6M4 381 aaKnown RBP13.77□□□□□ -0.21
CPT1A-201ENST00000265641 SIN3AQ96ST3 1273 aa13.77□□□□□ -0.21
CPT1A-201ENST00000265641 GOLGA6L6A8MZA4 724 aa13.76□□□□□ -0.21
CPT1A-201ENST00000265641 CFAP44Q96MT7 982 aa13.76□□□□□ -0.21
CPT1A-201ENST00000265641 UBE2Q2Q8WVN8 375 aa13.76□□□□□ -0.21
CPT1A-201ENST00000265641 GBP4Q96PP9 640 aa13.76□□□□□ -0.21
CPT1A-201ENST00000265641 MYH16Q9H6N6 1097 aa13.75□□□□□ -0.21
CPT1A-201ENST00000265641 HSCBQ8IWL3 235 aa13.75□□□□□ -0.21
CPT1A-201ENST00000265641 MTUS2Q5JR59 1369 aa13.74□□□□□ -0.21
CPT1A-201ENST00000265641 TNNT3P45378 269 aaPredicted RBP13.74□□□□□ -0.21
CPT1A-201ENST00000265641 ZNF777Q9ULD5 760 aaPredicted RBP13.74□□□□□ -0.21
CPT1A-201ENST00000265641 NRDCO43847 1150 aa13.73□□□□□ -0.21
CPT1A-201ENST00000265641 ARID3CA6NKF2 412 aa13.72□□□□□ -0.21
CPT1A-201ENST00000265641 KIAA2012Q0VF49 1180 aa13.72□□□□□ -0.21
CPT1A-201ENST00000265641 MS4A1P11836 297 aa13.7□□□□□ -0.22
CPT1A-201ENST00000265641 CASC1Q6TDU7 716 aa13.7□□□□□ -0.22
CPT1A-201ENST00000265641 ANO8Q9HCE9 1232 aaPredicted RBP13.7□□□□□ -0.22
CPT1A-201ENST00000265641 HSP90AB1P08238 724 aaKnown RBP13.7□□□□□ -0.22
CPT1A-201ENST00000265641 CCNB3Q8WWL7 1395 aa13.7□□□□□ -0.22
CPT1A-201ENST00000265641 FAM43AQ8N2R8 423 aa13.69□□□□□ -0.22
CPT1A-201ENST00000265641 CHMP4BQ9H444 224 aaKnown RBP13.69□□□□□ -0.22
CPT1A-201ENST00000265641 TPM2P07951 284 aa13.68□□□□□ -0.22
CPT1A-201ENST00000265641 RGS3P49796 1198 aa13.67□□□□□ -0.22
CPT1A-201ENST00000265641 KIF27Q86VH2 1401 aa13.66□□□□□ -0.22
CPT1A-201ENST00000265641 RRP7BPQ9NSQ0 103 aa13.66□□□□□ -0.22
CPT1A-201ENST00000265641 SENP3-EIF4A1A0A087X0R7 540 aa13.65□□□□□ -0.22
CPT1A-201ENST00000265641 DDX11L8A8MPP1 907 aa13.65□□□□□ -0.22
CPT1A-201ENST00000265641 KDM2AQ9Y2K7 1162 aa13.65□□□□□ -0.22
CPT1A-201ENST00000265641 ATAD2BQ9ULI0 1458 aa13.65□□□□□ -0.22
CPT1A-201ENST00000265641 RRP9O43818 475 aaKnown RBP13.65□□□□□ -0.23
CPT1A-201ENST00000265641 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.64□□□□□ -0.23
CPT1A-201ENST00000265641 VPS8Q8N3P4 1428 aa13.63□□□□□ -0.23
CPT1A-201ENST00000265641 CSPP1Q1MSJ5 1256 aa13.63□□□□□ -0.23
CPT1A-201ENST00000265641 AMER1Q5JTC6 1135 aaPredicted RBP13.63□□□□□ -0.23
CPT1A-201ENST00000265641 SKOR2Q2VWA4 1001 aaPredicted RBP13.63□□□□□ -0.23
CPT1A-201ENST00000265641 SYAP1Q96A49 352 aaPredicted RBP13.61□□□□□ -0.23
CPT1A-201ENST00000265641 NUDCQ9Y266 331 aa13.61□□□□□ -0.23
CPT1A-201ENST00000265641 ZRSR1Q15695 479 aaKnown RBP13.61□□□□□ -0.23
CPT1A-201ENST00000265641 ABCC8Q09428 1581 aa13.6□□□□□ -0.23
CPT1A-201ENST00000265641 SETD5Q9C0A6 1442 aa13.59□□□□□ -0.23
CPT1A-201ENST00000265641 PDE3BQ13370 1112 aa13.58□□□□□ -0.24
CPT1A-201ENST00000265641 SOGA1O94964 1423 aa13.55□□□□□ -0.24
CPT1A-201ENST00000265641 CDCA8Q53HL2 280 aa13.55□□□□□ -0.24
CPT1A-201ENST00000265641 KCNH8Q96L42 1107 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms