RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 CCER1Q8TC90 406 aaPredicted RBP16.97■□□□□ 0.31
MSH3-201ENST00000265081 FHAD1B1AJZ9 1412 aa16.97■□□□□ 0.31
MSH3-201ENST00000265081 LRRC9Q6ZRR7 1453 aa16.96■□□□□ 0.31
MSH3-201ENST00000265081 THOC2Q8NI27 1593 aaKnown RBP16.96■□□□□ 0.31
MSH3-201ENST00000265081 SNAPC4Q5SXM2 1469 aa16.95■□□□□ 0.3
MSH3-201ENST00000265081 KANK4Q5T7N3 995 aaPredicted RBP16.94■□□□□ 0.3
MSH3-201ENST00000265081 GAPVD1Q14C86 1478 aa16.94■□□□□ 0.3
MSH3-201ENST00000265081 WDR62O43379 1518 aa16.93■□□□□ 0.3
MSH3-201ENST00000265081 CASKIN1Q8WXD9 1431 aa16.93■□□□□ 0.3
MSH3-201ENST00000265081 ADAMTS12P58397 1594 aa16.92■□□□□ 0.3
MSH3-201ENST00000265081 MRC2Q9UBG0 1479 aa16.9■□□□□ 0.3
MSH3-201ENST00000265081 CLSPNQ9HAW4 1339 aa16.9■□□□□ 0.3
MSH3-201ENST00000265081 APLP2Q06481 763 aa16.9■□□□□ 0.3
MSH3-201ENST00000265081 CCNB3Q8WWL7 1395 aa16.86■□□□□ 0.29
MSH3-201ENST00000265081 TTBK1Q5TCY1 1321 aaPredicted RBP16.86■□□□□ 0.29
MSH3-201ENST00000265081 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.86■□□□□ 0.29
MSH3-201ENST00000265081 GRIN2BQ13224 1484 aa16.84■□□□□ 0.29
MSH3-201ENST00000265081 DNAJC5BQ9UF47 199 aa16.84■□□□□ 0.29
MSH3-201ENST00000265081 DHX57Q6P158 1386 aaKnown RBP16.83■□□□□ 0.29
MSH3-201ENST00000265081 FMN1Q68DA7 1419 aa16.82■□□□□ 0.28
MSH3-201ENST00000265081 ARHGEF11O15085 1522 aa16.81■□□□□ 0.28
MSH3-201ENST00000265081 FHOD3Q2V2M9 1422 aa16.8■□□□□ 0.28
MSH3-201ENST00000265081 IFT140Q96RY7 1462 aa16.78■□□□□ 0.28
MSH3-201ENST00000265081 PHLDB1Q86UU1 1377 aa16.77■□□□□ 0.28
MSH3-201ENST00000265081 IQGAP2Q13576 1575 aa16.77■□□□□ 0.27
MSH3-201ENST00000265081 UGGT2Q9NYU1 1516 aa16.76■□□□□ 0.27
MSH3-201ENST00000265081 TDRD9Q8NDG6 1382 aaKnown RBP16.76■□□□□ 0.27
MSH3-201ENST00000265081 RANGAP1P46060 587 aaPredicted RBP16.75■□□□□ 0.27
MSH3-201ENST00000265081 HNRNPUL2Q1KMD3 747 aaKnown RBP16.74■□□□□ 0.27
MSH3-201ENST00000265081 MAPKBP1O60336 1514 aa16.74■□□□□ 0.27
MSH3-201ENST00000265081 EHBP1L1Q8N3D4 1523 aa16.73■□□□□ 0.27
MSH3-201ENST00000265081 EIF4G3O43432 1585 aaKnown RBP16.72■□□□□ 0.27
MSH3-201ENST00000265081 SUPT6HQ7KZ85 1726 aaKnown RBP16.72■□□□□ 0.27
MSH3-201ENST00000265081 HECW1Q76N89 1606 aa16.71■□□□□ 0.27
MSH3-201ENST00000265081 CCDC18Q5T9S5 1454 aa16.7■□□□□ 0.26
MSH3-201ENST00000265081 MAGI3Q5TCQ9 1506 aa16.67■□□□□ 0.26
MSH3-201ENST00000265081 KIAA0556O60303 1618 aa16.65■□□□□ 0.26
MSH3-201ENST00000265081 ZNF316A6NFI3 1004 aaPredicted RBP16.64■□□□□ 0.25
MSH3-201ENST00000265081 TCOF1Q13428 1488 aaKnown RBP16.64■□□□□ 0.25
MSH3-201ENST00000265081 FGD6Q6ZV73 1430 aa16.63■□□□□ 0.25
MSH3-201ENST00000265081 SETD5Q9C0A6 1442 aa16.63■□□□□ 0.25
MSH3-201ENST00000265081 ZNF608Q9ULD9 1512 aaPredicted RBP16.63■□□□□ 0.25
MSH3-201ENST00000265081 RAB3GAP2Q9H2M9 1393 aa16.62■□□□□ 0.25
MSH3-201ENST00000265081 GCC2Q8IWJ2 1684 aa16.61■□□□□ 0.25
MSH3-201ENST00000265081 DISP1Q96F81 1524 aa16.6■□□□□ 0.25
MSH3-201ENST00000265081 MAGI1Q96QZ7 1491 aaPredicted RBP16.6■□□□□ 0.25
MSH3-201ENST00000265081 KIAA0586Q9BVV6 1533 aa16.6■□□□□ 0.25
MSH3-201ENST00000265081 NCOA2Q15596 1464 aa16.6■□□□□ 0.25
MSH3-201ENST00000265081 PTPN23Q9H3S7 1636 aa16.59■□□□□ 0.25
MSH3-201ENST00000265081 DIEXFQ68CQ4 756 aaKnown RBP16.59■□□□□ 0.25
MSH3-201ENST00000265081 GRIN2AQ12879 1464 aa16.58■□□□□ 0.25
MSH3-201ENST00000265081 MYOM3Q5VTT5 1437 aa16.58■□□□□ 0.24
MSH3-201ENST00000265081 EPRSP07814 1512 aaKnown RBP16.57■□□□□ 0.24
MSH3-201ENST00000265081 CEP170Q5SW79 1584 aa16.55■□□□□ 0.24
MSH3-201ENST00000265081 HFM1A2PYH4 1435 aa16.54■□□□□ 0.24
MSH3-201ENST00000265081 ADCY10Q96PN6 1610 aa16.54■□□□□ 0.24
MSH3-201ENST00000265081 AKNAQ7Z591 1439 aa16.54■□□□□ 0.24
MSH3-201ENST00000265081 RAPGEF6Q8TEU7 1601 aa16.53■□□□□ 0.24
MSH3-201ENST00000265081 PTPRKQ15262 1439 aa16.51■□□□□ 0.23
MSH3-201ENST00000265081 SYNJ2O15056 1496 aa16.51■□□□□ 0.23
MSH3-201ENST00000265081 P3H3Q8IVL6 736 aa16.5■□□□□ 0.23
MSH3-201ENST00000265081 NUP160Q12769 1436 aa16.49■□□□□ 0.23
MSH3-201ENST00000265081 MIA2Q96PC5 1412 aa16.49■□□□□ 0.23
MSH3-201ENST00000265081 MTUS2Q5JR59 1369 aa16.46■□□□□ 0.23
MSH3-201ENST00000265081 NUP153P49790 1475 aaKnown RBP16.46■□□□□ 0.23
MSH3-201ENST00000265081 CDK13Q14004 1512 aaKnown RBP16.45■□□□□ 0.22
MSH3-201ENST00000265081 NAIPQ13075 1403 aa16.44■□□□□ 0.22
MSH3-201ENST00000265081 DNMT1P26358 1616 aaKnown RBP16.44■□□□□ 0.22
MSH3-201ENST00000265081 UACAQ9BZF9 1416 aa16.43■□□□□ 0.22
MSH3-201ENST00000265081 TIMELESSQ9UNS1 1208 aa16.42■□□□□ 0.22
MSH3-201ENST00000265081 CROCC2H7BZ55 1655 aa16.41■□□□□ 0.22
MSH3-201ENST00000265081 KDM5BQ9UGL1 1544 aa16.41■□□□□ 0.22
MSH3-201ENST00000265081 ERCC6Q03468 1493 aa16.41■□□□□ 0.22
MSH3-201ENST00000265081 ITSN2Q9NZM3 1697 aa16.41■□□□□ 0.22
MSH3-201ENST00000265081 ABCA8O94911 1581 aa16.39■□□□□ 0.21
MSH3-201ENST00000265081 DENND4BO75064 1496 aaPredicted RBP16.38■□□□□ 0.21
MSH3-201ENST00000265081 ADGBQ8N7X0 1667 aa16.37■□□□□ 0.21
MSH3-201ENST00000265081 KDM6BO15054 1643 aa16.36■□□□□ 0.21
MSH3-201ENST00000265081 SHROOM2Q13796 1616 aa16.35■□□□□ 0.21
MSH3-201ENST00000265081 SCAF1Q9H7N4 1312 aaKnown RBP16.35■□□□□ 0.21
MSH3-201ENST00000265081 ACIN1Q9UKV3 1341 aaKnown RBP16.35■□□□□ 0.21
MSH3-201ENST00000265081 ROCK1Q13464 1354 aa16.33■□□□□ 0.21
MSH3-201ENST00000265081 FAM50AQ14320 339 aaKnown RBP16.33■□□□□ 0.21
MSH3-201ENST00000265081 CDC42BPAQ5VT25 1732 aa16.29■□□□□ 0.2
MSH3-201ENST00000265081 KIF14Q15058 1648 aa16.29■□□□□ 0.2
MSH3-201ENST00000265081 TROQ12816 1431 aaPredicted RBP16.28■□□□□ 0.2
MSH3-201ENST00000265081 ITGAEP38570 1179 aa16.28■□□□□ 0.2
MSH3-201ENST00000265081 DAPK1P53355 1430 aa16.28■□□□□ 0.2
MSH3-201ENST00000265081 ADGRL2O95490 1459 aa16.27■□□□□ 0.2
MSH3-201ENST00000265081 CHD1O14646 1710 aa16.27■□□□□ 0.2
MSH3-201ENST00000265081 MIER1Q8N108 512 aa16.27■□□□□ 0.2
MSH3-201ENST00000265081 NEUROD1Q13562 356 aa16.27■□□□□ 0.19
MSH3-201ENST00000265081 ATP1B4Q9UN42 357 aaPredicted RBP16.25■□□□□ 0.19
MSH3-201ENST00000265081 ABCC10Q5T3U5 1492 aa16.24■□□□□ 0.19
MSH3-201ENST00000265081 ABCC5O15440 1437 aa16.24■□□□□ 0.19
MSH3-201ENST00000265081 PLB1Q6P1J6 1458 aa16.24■□□□□ 0.19
MSH3-201ENST00000265081 CARMIL2Q6F5E8 1435 aa16.23■□□□□ 0.19
MSH3-201ENST00000265081 GPATCH8Q9UKJ3 1502 aaKnown RBP16.22■□□□□ 0.19
MSH3-201ENST00000265081 CAMSAP2Q08AD1 1489 aa16.22■□□□□ 0.19
MSH3-201ENST00000265081 SHANK2Q9UPX8 1470 aa16.21■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms