RNA–Protein interactions for RNA: ENST00000262188.12

SMARCD3-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD3, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-201ENST00000262188 TNIKQ9UKE5 1360 aa44.42■■■■■ 4.7
SMARCD3-201ENST00000262188 NUP160Q12769 1436 aa44.34■■■■■ 4.69
SMARCD3-201ENST00000262188 CTTNBP2Q8WZ74 1663 aa44.34■■■■■ 4.69
SMARCD3-201ENST00000262188 KIAA0586Q9BVV6 1533 aa44.2■■■■■ 4.67
SMARCD3-201ENST00000262188 CEP162Q5TB80 1403 aa44.18■■■■■ 4.66
SMARCD3-201ENST00000262188 IQGAP2Q13576 1575 aa44.18■■■■■ 4.66
SMARCD3-201ENST00000262188 OSCARQ8IYS5 282 aa44.11■■■■■ 4.65
SMARCD3-201ENST00000262188 CLIP1P30622 1438 aa44.06■■■■■ 4.64
SMARCD3-201ENST00000262188 CLASP1Q7Z460 1538 aa44.05■■■■■ 4.64
SMARCD3-201ENST00000262188 P3H3Q8IVL6 736 aa44.01■■■■■ 4.64
SMARCD3-201ENST00000262188 JPH4Q96JJ6 628 aa44.01■■■■■ 4.64
SMARCD3-201ENST00000262188 ARHGAP35Q9NRY4 1499 aa43.95■■■■■ 4.63
SMARCD3-201ENST00000262188 UGGT2Q9NYU1 1516 aa43.92■■■■■ 4.62
SMARCD3-201ENST00000262188 SHROOM2Q13796 1616 aa43.84■■■■■ 4.61
SMARCD3-201ENST00000262188 DISP1Q96F81 1524 aa43.84■■■■■ 4.61
SMARCD3-201ENST00000262188 SAMD9Q5K651 1589 aa43.84■■■■■ 4.61
SMARCD3-201ENST00000262188 PRG4Q92954 1404 aaPredicted RBP43.83■■■■■ 4.61
SMARCD3-201ENST00000262188 FHOD3Q2V2M9 1422 aa43.82■■■■■ 4.61
SMARCD3-201ENST00000262188 ARAP1Q96P48 1450 aa43.82■■■■■ 4.6
SMARCD3-201ENST00000262188 ERCC6L2Q5T890 1561 aa43.79■■■■■ 4.6
SMARCD3-201ENST00000262188 EFCAB5A4FU69 1503 aa43.78■■■■■ 4.6
SMARCD3-201ENST00000262188 TTBK1Q5TCY1 1321 aaPredicted RBP43.77■■■■■ 4.6
SMARCD3-201ENST00000262188 KIAA0556O60303 1618 aa43.76■■■■■ 4.6
SMARCD3-201ENST00000262188 CARMIL2Q6F5E8 1435 aa43.67■■■■■ 4.58
SMARCD3-201ENST00000262188 VPS8Q8N3P4 1428 aa43.49■■■■■ 4.55
SMARCD3-201ENST00000262188 ARHGEF11O15085 1522 aa43.42■■■■■ 4.54
SMARCD3-201ENST00000262188 PTPRGP23470 1445 aa43.41■■■■■ 4.54
SMARCD3-201ENST00000262188 FMN1Q68DA7 1419 aa43.4■■■■■ 4.54
SMARCD3-201ENST00000262188 ATP1B4Q9UN42 357 aaPredicted RBP43.38■■■■■ 4.53
SMARCD3-201ENST00000262188 PCF11O94913 1555 aaKnown RBP43.37■■■■■ 4.53
SMARCD3-201ENST00000262188 PLB1Q6P1J6 1458 aa43.34■■■■■ 4.53
SMARCD3-201ENST00000262188 RIMBP3CA6NJZ7 1639 aa43.31■■■■■ 4.52
SMARCD3-201ENST00000262188 RIMBP3BA6NNM3 1639 aa43.31■■■■■ 4.52
SMARCD3-201ENST00000262188 RIMBP3Q9UFD9 1639 aa43.31■■■■■ 4.52
SMARCD3-201ENST00000262188 ARID3CA6NKF2 412 aa43.27■■■■■ 4.52
SMARCD3-201ENST00000262188 CASKIN1Q8WXD9 1431 aa43.24■■■■■ 4.51
SMARCD3-201ENST00000262188 RAPGEF6Q8TEU7 1601 aa43.21■■■■■ 4.51
SMARCD3-201ENST00000262188 ABCA8O94911 1581 aa43.18■■■■■ 4.5
SMARCD3-201ENST00000262188 FYCO1Q9BQS8 1478 aa43.18■■■■■ 4.5
SMARCD3-201ENST00000262188 PPARGC1BQ86YN6 1023 aaKnown RBP43.13■■■■■ 4.5
SMARCD3-201ENST00000262188 UACAQ9BZF9 1416 aa43.13■■■■■ 4.5
SMARCD3-201ENST00000262188 LRRIQ1Q96JM4 1722 aa43.13■■■■■ 4.49
SMARCD3-201ENST00000262188 NUP153P49790 1475 aaKnown RBP43.12■■■■■ 4.49
SMARCD3-201ENST00000262188 CYB5RLQ6IPT4 315 aa43.1■■■■■ 4.49
SMARCD3-201ENST00000262188 HECW1Q76N89 1606 aa43.08■■■■■ 4.49
SMARCD3-201ENST00000262188 CDK13Q14004 1512 aaKnown RBP43.04■■■■■ 4.48
SMARCD3-201ENST00000262188 ABCC2Q92887 1545 aa43.02■■■■■ 4.48
SMARCD3-201ENST00000262188 EPRSP07814 1512 aaKnown RBP43■■■■■ 4.47
SMARCD3-201ENST00000262188 APLP2Q06481 763 aa42.99■■■■■ 4.47
SMARCD3-201ENST00000262188 ADCY10Q96PN6 1610 aa42.99■■■■■ 4.47
SMARCD3-201ENST00000262188 DNAJC5Q9H3Z4 198 aa42.96■■■■■ 4.47
SMARCD3-201ENST00000262188 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP42.95■■■■■ 4.47
SMARCD3-201ENST00000262188 HNRNPUL2Q1KMD3 747 aaKnown RBP42.95■■■■■ 4.47
SMARCD3-201ENST00000262188 KANK4Q5T7N3 995 aaPredicted RBP42.93■■■■■ 4.46
SMARCD3-201ENST00000262188 TIAM1Q13009 1591 aa42.93■■■■■ 4.46
SMARCD3-201ENST00000262188 UHRF1BP1LA0JNW5 1464 aa42.92■■■■■ 4.46
SMARCD3-201ENST00000262188 ATP10BO94823 1461 aa42.91■■■■■ 4.46
SMARCD3-201ENST00000262188 CFAP43Q8NDM7 1665 aa42.88■■■■■ 4.45
SMARCD3-201ENST00000262188 CCDC18Q5T9S5 1454 aa42.86■■■■■ 4.45
SMARCD3-201ENST00000262188 MAGI3Q5TCQ9 1506 aa42.8■■■■■ 4.44
SMARCD3-201ENST00000262188 ZCCHC11Q5TAX3 1644 aaKnown RBP42.79■■■■■ 4.44
SMARCD3-201ENST00000262188 MAP3K1Q13233 1512 aa42.79■■■■■ 4.44
SMARCD3-201ENST00000262188 KDM5BQ9UGL1 1544 aa42.78■■■■■ 4.44
SMARCD3-201ENST00000262188 LRRC9Q6ZRR7 1453 aa42.73■■■■■ 4.43
SMARCD3-201ENST00000262188 MTUS2Q5JR59 1369 aa42.69■■■■■ 4.42
SMARCD3-201ENST00000262188 NPM1P06748 294 aaKnown RBP eCLIP42.63■■■■■ 4.42
SMARCD3-201ENST00000262188 CDK11AQ9UQ88 783 aaPredicted RBP42.61■■■■■ 4.41
SMARCD3-201ENST00000262188 PLEKHD1A6NEE1 506 aa42.6■■■■■ 4.41
SMARCD3-201ENST00000262188 EHBP1L1Q8N3D4 1523 aa42.56■■■■■ 4.4
SMARCD3-201ENST00000262188 TROQ12816 1431 aaPredicted RBP42.55■■■■■ 4.4
SMARCD3-201ENST00000262188 ASXL2Q76L83 1435 aa42.51■■■■■ 4.4
SMARCD3-201ENST00000262188 KCNH8Q96L42 1107 aa42.5■■■■■ 4.39
SMARCD3-201ENST00000262188 KIF14Q15058 1648 aa42.49■■■■■ 4.39
SMARCD3-201ENST00000262188 PELP1Q8IZL8 1130 aaKnown RBP42.47■■■■■ 4.39
SMARCD3-201ENST00000262188 WDR7Q9Y4E6 1490 aa42.43■■■■■ 4.38
SMARCD3-201ENST00000262188 NCOA2Q15596 1464 aa42.43■■■■■ 4.38
SMARCD3-201ENST00000262188 SUPT6HQ7KZ85 1726 aaKnown RBP42.41■■■■■ 4.38
SMARCD3-201ENST00000262188 PHLDB1Q86UU1 1377 aa42.38■■■■■ 4.37
SMARCD3-201ENST00000262188 MAPKBP1O60336 1514 aa42.33■■■■■ 4.37
SMARCD3-201ENST00000262188 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP42.26■■■■■ 4.36
SMARCD3-201ENST00000262188 ABCC10Q5T3U5 1492 aa42.26■■■■■ 4.36
SMARCD3-201ENST00000262188 TTC37Q6PGP7 1564 aa42.26■■■■■ 4.36
SMARCD3-201ENST00000262188 CCNB3Q8WWL7 1395 aa42.2■■■■■ 4.35
SMARCD3-201ENST00000262188 MYOM3Q5VTT5 1437 aa42.15■■■■■ 4.34
SMARCD3-201ENST00000262188 GPATCH8Q9UKJ3 1502 aaKnown RBP42.14■■■■■ 4.34
SMARCD3-201ENST00000262188 CDC42BPAQ5VT25 1732 aa42.11■■■■■ 4.33
SMARCD3-201ENST00000262188 ABCA9Q8IUA7 1624 aa42.07■■■■■ 4.33
SMARCD3-201ENST00000262188 FGD6Q6ZV73 1430 aa42.07■■■■■ 4.32
SMARCD3-201ENST00000262188 DIP2BQ9P265 1576 aa42.06■■■■■ 4.32
SMARCD3-201ENST00000262188 FAM69CQ0P6D2 419 aa42.06■■■■■ 4.32
SMARCD3-201ENST00000262188 CFDP1Q9UEE9 299 aaPredicted RBP42.02■■■■■ 4.32
SMARCD3-201ENST00000262188 ZNF644Q9H582 1327 aaPredicted RBP42.01■■■■■ 4.32
SMARCD3-201ENST00000262188 MYO5CQ9NQX4 1742 aa42.01■■■■■ 4.32
SMARCD3-201ENST00000262188 ZNF777Q9ULD5 760 aaPredicted RBP42.01■■■■■ 4.32
SMARCD3-201ENST00000262188 CDC42BPBQ9Y5S2 1711 aa42■■■■■ 4.31
SMARCD3-201ENST00000262188 RRBP1Q9P2E9 1410 aaKnown RBP42■■■■■ 4.31
SMARCD3-201ENST00000262188 ITSN2Q9NZM3 1697 aa42■■■■■ 4.31
SMARCD3-201ENST00000262188 TRIM26Q12899 539 aaPredicted RBP41.99■■■■■ 4.31
SMARCD3-201ENST00000262188 PREX2Q70Z35 1606 aa41.99■■■■■ 4.31
SMARCD3-201ENST00000262188 FAM50AQ14320 339 aaKnown RBP41.99■■■■■ 4.31
Retrieved 100 of 20,778 RNA–protein pairs in 234 ms