RNA–Protein interactions for RNA: ENST00000261667.7

KPNA3-201, Transcript of karyopherin subunit alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KPNA3, Length 4,474 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KPNA3-201ENST00000261667 NOP58Q9Y2X3 529 aaKnown RBP14.59□□□□□ -0.07
KPNA3-201ENST00000261667 ABCC8Q09428 1581 aa14.58□□□□□ -0.08
KPNA3-201ENST00000261667 SALL2Q9Y467 1007 aaPredicted RBP14.57□□□□□ -0.08
KPNA3-201ENST00000261667 IRX6P78412 446 aaPredicted RBP14.53□□□□□ -0.08
KPNA3-201ENST00000261667 CDK11BP21127 795 aaKnown RBP14.53□□□□□ -0.08
KPNA3-201ENST00000261667 TRIM52Q96A61 297 aa14.52□□□□□ -0.09
KPNA3-201ENST00000261667 AMER1Q5JTC6 1135 aaPredicted RBP14.51□□□□□ -0.09
KPNA3-201ENST00000261667 ANP32BQ92688 251 aaKnown RBP14.5□□□□□ -0.09
KPNA3-201ENST00000261667 SYNJ1O43426 1573 aa14.49□□□□□ -0.09
KPNA3-201ENST00000261667 POLR3GLQ9BT43 218 aa14.49□□□□□ -0.09
KPNA3-201ENST00000261667 CFTRP13569 1480 aa14.48□□□□□ -0.09
KPNA3-201ENST00000261667 BIVM-ERCC5R4GMW8 1640 aa14.48□□□□□ -0.09
KPNA3-201ENST00000261667 LAS1LQ9Y4W2 734 aaKnown RBP14.47□□□□□ -0.09
KPNA3-201ENST00000261667 HSP90AA1P07900 732 aaKnown RBP14.47□□□□□ -0.09
KPNA3-201ENST00000261667 TIMELESSQ9UNS1 1208 aa14.47□□□□□ -0.09
KPNA3-201ENST00000261667 PPM1GO15355 546 aaPredicted RBP14.44□□□□□ -0.1
KPNA3-201ENST00000261667 UBE2Q2Q8WVN8 375 aa14.44□□□□□ -0.1
KPNA3-201ENST00000261667 ARID4BQ4LE39 1312 aaPredicted RBP14.43□□□□□ -0.1
KPNA3-201ENST00000261667 TOP2BQ02880 1626 aa14.43□□□□□ -0.1
KPNA3-201ENST00000261667 HNRNPUQ00839 825 aaKnown RBP eCLIP14.43□□□□□ -0.1
KPNA3-201ENST00000261667 NCLP19338 710 aaKnown RBP14.43□□□□□ -0.1
KPNA3-201ENST00000261667 ATP1B4Q9UN42 357 aaPredicted RBP14.43□□□□□ -0.1
KPNA3-201ENST00000261667 HSP90AA2PQ14568 343 aaPredicted RBP14.41□□□□□ -0.1
KPNA3-201ENST00000261667 RSPH6AQ9H0K4 717 aa14.41□□□□□ -0.1
KPNA3-201ENST00000261667 WRNQ14191 1432 aaPredicted RBP eCLIP14.39□□□□□ -0.11
KPNA3-201ENST00000261667 TRIM44Q96DX7 344 aaPredicted RBP14.38□□□□□ -0.11
KPNA3-201ENST00000261667 CUX1P39880 1505 aa14.33□□□□□ -0.12
KPNA3-201ENST00000261667 DDX10Q13206 875 aaKnown RBP14.31□□□□□ -0.12
KPNA3-201ENST00000261667 PNNQ9H307 717 aaKnown RBP14.31□□□□□ -0.12
KPNA3-201ENST00000261667 CADPSQ9ULU8 1353 aa14.3□□□□□ -0.12
KPNA3-201ENST00000261667 SOGA1O94964 1423 aa14.29□□□□□ -0.12
KPNA3-201ENST00000261667 RUSC2Q8N2Y8 1516 aa14.28□□□□□ -0.12
KPNA3-201ENST00000261667 DDRGK1Q96HY6 314 aa14.27□□□□□ -0.12
KPNA3-201ENST00000261667 EEA1Q15075 1411 aa14.27□□□□□ -0.13
KPNA3-201ENST00000261667 LAMC3Q9Y6N6 1575 aa14.25□□□□□ -0.13
KPNA3-201ENST00000261667 IL27Q8NEV9 243 aa14.25□□□□□ -0.13
KPNA3-201ENST00000261667 KIF21BO75037 1637 aa14.23□□□□□ -0.13
KPNA3-201ENST00000261667 PLEKHG5O94827 1062 aa14.21□□□□□ -0.13
KPNA3-201ENST00000261667 PPP4R2Q9NY27 417 aa14.21□□□□□ -0.14
KPNA3-201ENST00000261667 ARID3AQ99856 593 aa14.2□□□□□ -0.14
KPNA3-201ENST00000261667 PDE4CQ08493 712 aa14.19□□□□□ -0.14
KPNA3-201ENST00000261667 NESP48681 1621 aa14.17□□□□□ -0.14
KPNA3-201ENST00000261667 B4GALNT3Q6L9W6 998 aa14.16□□□□□ -0.14
KPNA3-201ENST00000261667 FAM9BQ8IZU0 186 aa14.16□□□□□ -0.14
KPNA3-201ENST00000261667 FANCIQ9NVI1 1328 aa14.16□□□□□ -0.14
KPNA3-201ENST00000261667 FANCD2Q9BXW9 1451 aa14.15□□□□□ -0.14
KPNA3-201ENST00000261667 WDR97A6NE52 1622 aa14.15□□□□□ -0.14
KPNA3-201ENST00000261667 DNMBPQ6XZF7 1577 aa14.14□□□□□ -0.15
KPNA3-201ENST00000261667 DNAJC5BQ9UF47 199 aa14.14□□□□□ -0.15
KPNA3-201ENST00000261667 UPF2Q9HAU5 1272 aaKnown RBP14.14□□□□□ -0.15
KPNA3-201ENST00000261667 KIF21AQ7Z4S6 1674 aa14.13□□□□□ -0.15
KPNA3-201ENST00000261667 L1TD1Q5T7N2 865 aaKnown RBP14.13□□□□□ -0.15
KPNA3-201ENST00000261667 ZNF326Q5BKZ1 582 aaKnown RBP14.12□□□□□ -0.15
KPNA3-201ENST00000261667 IPO9Q96P70 1041 aaKnown RBP14.1□□□□□ -0.15
KPNA3-201ENST00000261667 DNTTIP2Q5QJE6 756 aaKnown RBP14.09□□□□□ -0.15
KPNA3-201ENST00000261667 PRXQ9BXM0 1461 aa14.08□□□□□ -0.16
KPNA3-201ENST00000261667 ERICH3Q5RHP9 1530 aa14.08□□□□□ -0.16
KPNA3-201ENST00000261667 ZMYND15Q9H091 742 aa14.07□□□□□ -0.16
KPNA3-201ENST00000261667 TOPBP1Q92547 1522 aa14.07□□□□□ -0.16
KPNA3-201ENST00000261667 FGD5Q6ZNL6 1462 aa14.07□□□□□ -0.16
KPNA3-201ENST00000261667 URB2Q14146 1524 aaKnown RBP14.06□□□□□ -0.16
KPNA3-201ENST00000261667 GOLGA3Q08378 1498 aa14.06□□□□□ -0.16
KPNA3-201ENST00000261667 CEP164Q9UPV0 1460 aa14.06□□□□□ -0.16
KPNA3-201ENST00000261667 TNIKQ9UKE5 1360 aa14.06□□□□□ -0.16
KPNA3-201ENST00000261667 USP35Q9P2H5 1018 aa14.06□□□□□ -0.16
KPNA3-201ENST00000261667 BECN1Q14457 450 aa14.05□□□□□ -0.16
KPNA3-201ENST00000261667 GSE1Q14687 1217 aa14.04□□□□□ -0.16
KPNA3-201ENST00000261667 ABCA10Q8WWZ4 1543 aa14.01□□□□□ -0.17
KPNA3-201ENST00000261667 POLA1P09884 1462 aaPredicted RBP14.01□□□□□ -0.17
KPNA3-201ENST00000261667 RAPGEF2Q9Y4G8 1499 aa14.01□□□□□ -0.17
KPNA3-201ENST00000261667 CANXP27824 592 aaKnown RBP14□□□□□ -0.17
KPNA3-201ENST00000261667 TNNT3P45378 269 aaPredicted RBP14□□□□□ -0.17
KPNA3-201ENST00000261667 MSNP26038 577 aaKnown RBP14□□□□□ -0.17
KPNA3-201ENST00000261667 BRPF3Q9ULD4 1205 aa13.99□□□□□ -0.17
KPNA3-201ENST00000261667 ABCA5Q8WWZ7 1642 aa13.99□□□□□ -0.17
KPNA3-201ENST00000261667 TARBP1Q13395 1621 aaKnown RBP13.99□□□□□ -0.17
KPNA3-201ENST00000261667 PTMAP06454 111 aaKnown RBP13.98□□□□□ -0.17
KPNA3-201ENST00000261667 CEP162Q5TB80 1403 aa13.97□□□□□ -0.17
KPNA3-201ENST00000261667 KIF27Q86VH2 1401 aa13.97□□□□□ -0.17
KPNA3-201ENST00000261667 PDS5BQ9NTI5 1447 aa13.97□□□□□ -0.17
KPNA3-201ENST00000261667 MRS2Q9HD23 443 aa13.96□□□□□ -0.18
KPNA3-201ENST00000261667 HIRIP3Q9BW71 556 aaPredicted RBP13.92□□□□□ -0.18
KPNA3-201ENST00000261667 WDR62O43379 1518 aa13.92□□□□□ -0.18
KPNA3-201ENST00000261667 IGF1RP08069 1367 aa13.92□□□□□ -0.18
KPNA3-201ENST00000261667 CUX2O14529 1486 aa13.91□□□□□ -0.18
KPNA3-201ENST00000261667 RAD54L2Q9Y4B4 1467 aa13.91□□□□□ -0.18
KPNA3-201ENST00000261667 THOC2Q8NI27 1593 aaKnown RBP13.9□□□□□ -0.18
KPNA3-201ENST00000261667 CUL7Q14999 1698 aa13.9□□□□□ -0.18
KPNA3-201ENST00000261667 PDIA4P13667 645 aaKnown RBP13.9□□□□□ -0.18
KPNA3-201ENST00000261667 APPP05067 770 aa13.89□□□□□ -0.19
KPNA3-201ENST00000261667 FAM50AQ14320 339 aaKnown RBP13.89□□□□□ -0.19
KPNA3-201ENST00000261667 GOLGA6L22H0YM25 854 aa13.88□□□□□ -0.19
KPNA3-201ENST00000261667 GZF1Q9H116 711 aaPredicted RBP13.88□□□□□ -0.19
KPNA3-201ENST00000261667 RRP9O43818 475 aaKnown RBP13.88□□□□□ -0.19
KPNA3-201ENST00000261667 GOLGA6L3A6NEY3 463 aa13.87□□□□□ -0.19
KPNA3-201ENST00000261667 MRC2Q9UBG0 1479 aa13.87□□□□□ -0.19
KPNA3-201ENST00000261667 MSH5O43196 834 aa13.87□□□□□ -0.19
KPNA3-201ENST00000261667 PTMSP20962 102 aa13.86□□□□□ -0.19
KPNA3-201ENST00000261667 CLIP1P30622 1438 aa13.86□□□□□ -0.19
KPNA3-201ENST00000261667 FAM13BQ9NYF5 915 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms