RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 ANP32EQ9BTT0 268 aa5.78□□□□□ -1.48
VPS13C-202ENST00000261517 ARHGAP35Q9NRY4 1499 aa5.78□□□□□ -1.48
VPS13C-202ENST00000261517 VPS8Q8N3P4 1428 aa5.78□□□□□ -1.48
VPS13C-202ENST00000261517 CHMP4AQ9BY43 222 aa5.78□□□□□ -1.48
VPS13C-202ENST00000261517 CADPSQ9ULU8 1353 aa5.78□□□□□ -1.48
VPS13C-202ENST00000261517 MROH2BQ7Z745 1585 aa5.78□□□□□ -1.48
VPS13C-202ENST00000261517 ANP32AP39687 249 aaKnown RBP5.78□□□□□ -1.48
VPS13C-202ENST00000261517 CCDC18Q5T9S5 1454 aa5.77□□□□□ -1.49
VPS13C-202ENST00000261517 CFAP44Q96MT7 982 aa5.77□□□□□ -1.49
VPS13C-202ENST00000261517 PPARGC1BQ86YN6 1023 aaKnown RBP5.77□□□□□ -1.49
VPS13C-202ENST00000261517 CUX2O14529 1486 aa5.77□□□□□ -1.49
VPS13C-202ENST00000261517 HAP1P54257 671 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-202ENST00000261517 ATAD2BQ9ULI0 1458 aa5.76□□□□□ -1.49
VPS13C-202ENST00000261517 CCNB3Q8WWL7 1395 aa5.76□□□□□ -1.49
VPS13C-202ENST00000261517 MS4A1P11836 297 aa5.76□□□□□ -1.49
VPS13C-202ENST00000261517 WIZO95785 1651 aa5.76□□□□□ -1.49
VPS13C-202ENST00000261517 RAPGEF2Q9Y4G8 1499 aa5.76□□□□□ -1.49
VPS13C-202ENST00000261517 ANP32BQ92688 251 aaKnown RBP5.76□□□□□ -1.49
VPS13C-202ENST00000261517 CECR2Q9BXF3 1484 aa5.76□□□□□ -1.49
VPS13C-202ENST00000261517 EIF4G2P78344 907 aaKnown RBP eCLIP5.76□□□□□ -1.49
VPS13C-202ENST00000261517 CUX1P39880 1505 aa5.75□□□□□ -1.49
VPS13C-202ENST00000261517 ZNF777Q9ULD5 760 aaPredicted RBP5.75□□□□□ -1.49
VPS13C-202ENST00000261517 ERICH3Q5RHP9 1530 aa5.75□□□□□ -1.49
VPS13C-202ENST00000261517 BCANQ96GW7 911 aa5.75□□□□□ -1.49
VPS13C-202ENST00000261517 CFAP53Q96M91 514 aa5.74□□□□□ -1.49
VPS13C-202ENST00000261517 NCAPD3P42695 1498 aa5.74□□□□□ -1.49
VPS13C-202ENST00000261517 STAC3Q96MF2 364 aa5.74□□□□□ -1.49
VPS13C-202ENST00000261517 UNC13AQ9UPW8 1703 aa5.74□□□□□ -1.49
VPS13C-202ENST00000261517 CFDP1Q9UEE9 299 aaPredicted RBP5.74□□□□□ -1.49
VPS13C-202ENST00000261517 KIF21BO75037 1637 aa5.74□□□□□ -1.49
VPS13C-202ENST00000261517 SOGA1O94964 1423 aa5.73□□□□□ -1.49
VPS13C-202ENST00000261517 WDR43Q15061 677 aaKnown RBP eCLIP5.73□□□□□ -1.49
VPS13C-202ENST00000261517 MYH16Q9H6N6 1097 aa5.73□□□□□ -1.49
VPS13C-202ENST00000261517 EIF3AQ14152 1382 aaKnown RBP5.73□□□□□ -1.49
VPS13C-202ENST00000261517 UACAQ9BZF9 1416 aa5.73□□□□□ -1.49
VPS13C-202ENST00000261517 ZNF326Q5BKZ1 582 aaKnown RBP5.72□□□□□ -1.49
VPS13C-202ENST00000261517 EFCAB5A4FU69 1503 aa5.72□□□□□ -1.49
VPS13C-202ENST00000261517 ROCK2O75116 1388 aaKnown RBP5.71□□□□□ -1.49
VPS13C-202ENST00000261517 ERICH6BQ5W0A0 696 aa5.71□□□□□ -1.49
VPS13C-202ENST00000261517 TMC1Q8TDI8 760 aa5.71□□□□□ -1.49
VPS13C-202ENST00000261517 P3H3Q8IVL6 736 aa5.71□□□□□ -1.5
VPS13C-202ENST00000261517 PEG3Q9GZU2 1588 aa5.7□□□□□ -1.5
VPS13C-202ENST00000261517 ANKRD30AQ9BXX3 1397 aa5.7□□□□□ -1.5
VPS13C-202ENST00000261517 SETD5Q9C0A6 1442 aa5.7□□□□□ -1.5
VPS13C-202ENST00000261517 EIF4G1Q04637 1599 aaKnown RBP5.7□□□□□ -1.5
VPS13C-202ENST00000261517 DDRGK1Q96HY6 314 aa5.69□□□□□ -1.5
VPS13C-202ENST00000261517 PHLDB1Q86UU1 1377 aa5.69□□□□□ -1.5
VPS13C-202ENST00000261517 FANCD2Q9BXW9 1451 aa5.69□□□□□ -1.5
VPS13C-202ENST00000261517 NUDCQ9Y266 331 aa5.69□□□□□ -1.5
VPS13C-202ENST00000261517 CUL7Q14999 1698 aa5.68□□□□□ -1.5
VPS13C-202ENST00000261517 SCAF1Q9H7N4 1312 aaKnown RBP5.68□□□□□ -1.5
VPS13C-202ENST00000261517 CALD1Q05682 793 aaKnown RBP5.67□□□□□ -1.5
VPS13C-202ENST00000261517 LAMC3Q9Y6N6 1575 aa5.67□□□□□ -1.5
VPS13C-202ENST00000261517 BECN1Q14457 450 aa5.67□□□□□ -1.5
VPS13C-202ENST00000261517 BICRAQ9NZM4 1560 aa5.67□□□□□ -1.5
VPS13C-202ENST00000261517 CASC1Q6TDU7 716 aa5.67□□□□□ -1.5
VPS13C-202ENST00000261517 KNSTRNQ9Y448 316 aa5.67□□□□□ -1.5
VPS13C-202ENST00000261517 PLEKHH2Q8IVE3 1493 aa5.67□□□□□ -1.5
VPS13C-202ENST00000261517 PPP1R15AO75807 674 aaPredicted RBP5.67□□□□□ -1.5
VPS13C-202ENST00000261517 SCAPERQ9BY12 1400 aa5.66□□□□□ -1.5
VPS13C-202ENST00000261517 NGEFQ8N5V2 710 aa5.66□□□□□ -1.5
VPS13C-202ENST00000261517 HDAC5Q9UQL6 1122 aa5.66□□□□□ -1.5
VPS13C-202ENST00000261517 EFCAB2Q5VUJ9 269 aa5.66□□□□□ -1.5
VPS13C-202ENST00000261517 NPM2Q86SE8 214 aaKnown RBP5.66□□□□□ -1.5
VPS13C-202ENST00000261517 TOP2BQ02880 1626 aa5.65□□□□□ -1.5
VPS13C-202ENST00000261517 CCER2I3L3R5 266 aa5.65□□□□□ -1.5
VPS13C-202ENST00000261517 PRDM2Q13029 1718 aa5.65□□□□□ -1.5
VPS13C-202ENST00000261517 CC2D2AQ9P2K1 1620 aa5.65□□□□□ -1.51
VPS13C-202ENST00000261517 HSP90AA1P07900 732 aaKnown RBP5.65□□□□□ -1.51
VPS13C-202ENST00000261517 ANO8Q9HCE9 1232 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-202ENST00000261517 TMF1P82094 1093 aa5.64□□□□□ -1.51
VPS13C-202ENST00000261517 CHGAP10645 457 aaKnown RBP5.64□□□□□ -1.51
VPS13C-202ENST00000261517 GAPVD1Q14C86 1478 aa5.64□□□□□ -1.51
VPS13C-202ENST00000261517 FYCO1Q9BQS8 1478 aa5.64□□□□□ -1.51
VPS13C-202ENST00000261517 DNMBPQ6XZF7 1577 aa5.63□□□□□ -1.51
VPS13C-202ENST00000261517 IFT140Q96RY7 1462 aa5.63□□□□□ -1.51
VPS13C-202ENST00000261517 PTMSP20962 102 aa5.63□□□□□ -1.51
VPS13C-202ENST00000261517 MRS2Q9HD23 443 aa5.63□□□□□ -1.51
VPS13C-202ENST00000261517 CFTRP13569 1480 aa5.63□□□□□ -1.51
VPS13C-202ENST00000261517 GOLGA6L22H0YM25 854 aa5.63□□□□□ -1.51
VPS13C-202ENST00000261517 HECW1Q76N89 1606 aa5.62□□□□□ -1.51
VPS13C-202ENST00000261517 GRIN2BQ13224 1484 aa5.62□□□□□ -1.51
VPS13C-202ENST00000261517 RALBP1Q15311 655 aa5.62□□□□□ -1.51
VPS13C-202ENST00000261517 HNRNPUQ00839 825 aaKnown RBP eCLIP5.62□□□□□ -1.51
VPS13C-202ENST00000261517 MRC2Q9UBG0 1479 aa5.62□□□□□ -1.51
VPS13C-202ENST00000261517 CCDC136Q96JN2 1154 aa5.61□□□□□ -1.51
VPS13C-202ENST00000261517 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.61□□□□□ -1.515e-7■■■□□ 15.9
VPS13C-202ENST00000261517 KTN1Q86UP2 1357 aaKnown RBP5.61□□□□□ -1.51
VPS13C-202ENST00000261517 WDR97A6NE52 1622 aa5.61□□□□□ -1.51
VPS13C-202ENST00000261517 MYOM3Q5VTT5 1437 aa5.61□□□□□ -1.51
VPS13C-202ENST00000261517 SUPT6HQ7KZ85 1726 aaKnown RBP5.61□□□□□ -1.51
VPS13C-202ENST00000261517 GTF3C3Q9Y5Q9 886 aa5.61□□□□□ -1.51
VPS13C-202ENST00000261517 EHBP1L1Q8N3D4 1523 aa5.6□□□□□ -1.51
VPS13C-202ENST00000261517 MAP3K1Q13233 1512 aa5.6□□□□□ -1.51
VPS13C-202ENST00000261517 CARD11Q9BXL7 1154 aa5.6□□□□□ -1.51
VPS13C-202ENST00000261517 KIF21AQ7Z4S6 1674 aa5.6□□□□□ -1.51
VPS13C-202ENST00000261517 MAPK8IP3Q9UPT6 1336 aa5.6□□□□□ -1.51
VPS13C-202ENST00000261517 HMGB2P26583 209 aaKnown RBP5.6□□□□□ -1.51
VPS13C-202ENST00000261517 NCLP19338 710 aaKnown RBP5.59□□□□□ -1.51
VPS13C-202ENST00000261517 CASKIN1Q8WXD9 1431 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms