RNA–Protein interactions for RNA: ENST00000258613.4

THSD1-201, Transcript of thrombospondin type 1 domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene THSD1, Length 2,962 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THSD1-201ENST00000258613 CCNB3Q8WWL7 1395 aa19.54■□□□□ 0.72
THSD1-201ENST00000258613 FAM50AQ14320 339 aaKnown RBP19.53■□□□□ 0.72
THSD1-201ENST00000258613 PCF11O94913 1555 aaKnown RBP19.52■□□□□ 0.72
THSD1-201ENST00000258613 DIEXFQ68CQ4 756 aaKnown RBP19.52■□□□□ 0.72
THSD1-201ENST00000258613 TIAM1Q13009 1591 aa19.52■□□□□ 0.71
THSD1-201ENST00000258613 RRBP1Q9P2E9 1410 aaKnown RBP19.51■□□□□ 0.71
THSD1-201ENST00000258613 PHLDB1Q86UU1 1377 aa19.51■□□□□ 0.71
THSD1-201ENST00000258613 ABCA5Q8WWZ7 1642 aa19.5■□□□□ 0.71
THSD1-201ENST00000258613 ARID3CA6NKF2 412 aa19.49■□□□□ 0.71
THSD1-201ENST00000258613 CUL7Q14999 1698 aa19.49■□□□□ 0.71
THSD1-201ENST00000258613 LRRC9Q6ZRR7 1453 aa19.48■□□□□ 0.71
THSD1-201ENST00000258613 TARBP1Q13395 1621 aaKnown RBP19.47■□□□□ 0.71
THSD1-201ENST00000258613 MYT1Q01538 1121 aa19.46■□□□□ 0.71
THSD1-201ENST00000258613 DHX57Q6P158 1386 aaKnown RBP19.46■□□□□ 0.71
THSD1-201ENST00000258613 FHAD1B1AJZ9 1412 aa19.46■□□□□ 0.71
THSD1-201ENST00000258613 CTTNBP2Q8WZ74 1663 aa19.45■□□□□ 0.7
THSD1-201ENST00000258613 ZNF608Q9ULD9 1512 aaPredicted RBP19.44■□□□□ 0.7
THSD1-201ENST00000258613 ZNF316A6NFI3 1004 aaPredicted RBP19.43■□□□□ 0.7
THSD1-201ENST00000258613 MRC2Q9UBG0 1479 aa19.41■□□□□ 0.7
THSD1-201ENST00000258613 CASKIN1Q8WXD9 1431 aa19.36■□□□□ 0.69
THSD1-201ENST00000258613 RAB3GAP2Q9H2M9 1393 aa19.36■□□□□ 0.69
THSD1-201ENST00000258613 EFCAB5A4FU69 1503 aa19.35■□□□□ 0.69
THSD1-201ENST00000258613 MAP3K1Q13233 1512 aa19.33■□□□□ 0.69
THSD1-201ENST00000258613 ERCC6Q03468 1493 aa19.33■□□□□ 0.68
THSD1-201ENST00000258613 FYCO1Q9BQS8 1478 aa19.33■□□□□ 0.68
THSD1-201ENST00000258613 PBRM1Q86U86 1689 aa19.32■□□□□ 0.68
THSD1-201ENST00000258613 SNAPC4Q5SXM2 1469 aa19.32■□□□□ 0.68
THSD1-201ENST00000258613 CFAP43Q8NDM7 1665 aa19.32■□□□□ 0.68
THSD1-201ENST00000258613 FBLN2P98095 1184 aa19.32■□□□□ 0.68
THSD1-201ENST00000258613 FMN1Q68DA7 1419 aa19.31■□□□□ 0.68
THSD1-201ENST00000258613 MTUS2Q5JR59 1369 aa19.31■□□□□ 0.68
THSD1-201ENST00000258613 LRRIQ1Q96JM4 1722 aa19.29■□□□□ 0.68
THSD1-201ENST00000258613 SAMD9Q5K651 1589 aa19.27■□□□□ 0.68
THSD1-201ENST00000258613 GRIN2BQ13224 1484 aa19.26■□□□□ 0.67
THSD1-201ENST00000258613 SIN3AQ96ST3 1273 aa19.26■□□□□ 0.67
THSD1-201ENST00000258613 NEUROD1Q13562 356 aa19.25■□□□□ 0.67
THSD1-201ENST00000258613 ADAMTS12P58397 1594 aa19.24■□□□□ 0.67
THSD1-201ENST00000258613 SETD5Q9C0A6 1442 aa19.23■□□□□ 0.67
THSD1-201ENST00000258613 MIER1Q8N108 512 aa19.23■□□□□ 0.67
THSD1-201ENST00000258613 YTHDC1Q96MU7 727 aaKnown RBP19.22■□□□□ 0.67
THSD1-201ENST00000258613 WDR62O43379 1518 aa19.21■□□□□ 0.67
THSD1-201ENST00000258613 IFT140Q96RY7 1462 aa19.21■□□□□ 0.67
THSD1-201ENST00000258613 IQGAP2Q13576 1575 aa19.19■□□□□ 0.66
THSD1-201ENST00000258613 MAGI3Q5TCQ9 1506 aa19.18■□□□□ 0.66
THSD1-201ENST00000258613 SCAF1Q9H7N4 1312 aaKnown RBP19.18■□□□□ 0.66
THSD1-201ENST00000258613 FGD6Q6ZV73 1430 aa19.18■□□□□ 0.66
THSD1-201ENST00000258613 CHIC2Q9UKJ5 165 aa19.18■□□□□ 0.66
THSD1-201ENST00000258613 PTPRKQ15262 1439 aa19.17■□□□□ 0.66
THSD1-201ENST00000258613 CHMP7Q8WUX9 453 aaPredicted RBP19.17■□□□□ 0.66
THSD1-201ENST00000258613 NCOA2Q15596 1464 aa19.17■□□□□ 0.66
THSD1-201ENST00000258613 CLSPNQ9HAW4 1339 aa19.16■□□□□ 0.66
THSD1-201ENST00000258613 CDK13Q14004 1512 aaKnown RBP19.16■□□□□ 0.66
THSD1-201ENST00000258613 MAPKBP1O60336 1514 aa19.16■□□□□ 0.66
THSD1-201ENST00000258613 EIF4G3O43432 1585 aaKnown RBP19.15■□□□□ 0.66
THSD1-201ENST00000258613 RRP7BPQ9NSQ0 103 aa19.12■□□□□ 0.65
THSD1-201ENST00000258613 THOC2Q8NI27 1593 aaKnown RBP19.09■□□□□ 0.65
THSD1-201ENST00000258613 GRIN2AQ12879 1464 aa19.09■□□□□ 0.65
THSD1-201ENST00000258613 MYOM3Q5VTT5 1437 aa19.08■□□□□ 0.65
THSD1-201ENST00000258613 EPRSP07814 1512 aaKnown RBP19.08■□□□□ 0.64
THSD1-201ENST00000258613 HIRIP3Q9BW71 556 aaPredicted RBP19.07■□□□□ 0.64
THSD1-201ENST00000258613 DISP1Q96F81 1524 aa19.06■□□□□ 0.64
THSD1-201ENST00000258613 KIAA0586Q9BVV6 1533 aa19.04■□□□□ 0.64
THSD1-201ENST00000258613 ACIN1Q9UKV3 1341 aaKnown RBP19.04■□□□□ 0.64
THSD1-201ENST00000258613 SUPT6HQ7KZ85 1726 aaKnown RBP19.03■□□□□ 0.64
THSD1-201ENST00000258613 ZNF644Q9H582 1327 aaPredicted RBP19.03■□□□□ 0.64
THSD1-201ENST00000258613 EHBP1L1Q8N3D4 1523 aa19.02■□□□□ 0.63
THSD1-201ENST00000258613 UGGT2Q9NYU1 1516 aa19.02■□□□□ 0.63
THSD1-201ENST00000258613 HECW1Q76N89 1606 aa19■□□□□ 0.63
THSD1-201ENST00000258613 CEP170Q5SW79 1584 aa18.99■□□□□ 0.63
THSD1-201ENST00000258613 JPH4Q96JJ6 628 aa18.99■□□□□ 0.63
THSD1-201ENST00000258613 CCDC18Q5T9S5 1454 aa18.99■□□□□ 0.63
THSD1-201ENST00000258613 KIAA0556O60303 1618 aa18.99■□□□□ 0.63
THSD1-201ENST00000258613 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.98■□□□□ 0.63
THSD1-201ENST00000258613 PTPN23Q9H3S7 1636 aa18.98■□□□□ 0.63
THSD1-201ENST00000258613 PLB1Q6P1J6 1458 aa18.98■□□□□ 0.63
THSD1-201ENST00000258613 NAIPQ13075 1403 aa18.97■□□□□ 0.63
THSD1-201ENST00000258613 NUP153P49790 1475 aaKnown RBP18.96■□□□□ 0.63
THSD1-201ENST00000258613 SYNJ2O15056 1496 aa18.96■□□□□ 0.63
THSD1-201ENST00000258613 TRIM52Q96A61 297 aa18.95■□□□□ 0.62
THSD1-201ENST00000258613 HFM1A2PYH4 1435 aa18.94■□□□□ 0.62
THSD1-201ENST00000258613 FOXD1Q16676 465 aa18.94■□□□□ 0.62
THSD1-201ENST00000258613 MAGI1Q96QZ7 1491 aaPredicted RBP18.94■□□□□ 0.62
THSD1-201ENST00000258613 ARHGEF11O15085 1522 aa18.94■□□□□ 0.62
THSD1-201ENST00000258613 PRG4Q92954 1404 aaPredicted RBP18.93■□□□□ 0.62
THSD1-201ENST00000258613 ZNF777Q9ULD5 760 aaPredicted RBP18.93■□□□□ 0.62
THSD1-201ENST00000258613 CENPBP07199 599 aaPredicted RBP18.92■□□□□ 0.62
THSD1-201ENST00000258613 GTF3C3Q9Y5Q9 886 aa18.91■□□□□ 0.62
THSD1-201ENST00000258613 KDM6BO15054 1643 aa18.89■□□□□ 0.61
THSD1-201ENST00000258613 RAPGEF6Q8TEU7 1601 aa18.87■□□□□ 0.61
THSD1-201ENST00000258613 PPP1R15AO75807 674 aaPredicted RBP18.87■□□□□ 0.61
THSD1-201ENST00000258613 DDX10Q13206 875 aaKnown RBP18.86■□□□□ 0.61
THSD1-201ENST00000258613 UACAQ9BZF9 1416 aa18.85■□□□□ 0.61
THSD1-201ENST00000258613 KCNH8Q96L42 1107 aa18.85■□□□□ 0.61
THSD1-201ENST00000258613 CDK11AQ9UQ88 783 aaPredicted RBP18.84■□□□□ 0.61
THSD1-201ENST00000258613 NUP160Q12769 1436 aa18.83■□□□□ 0.61
THSD1-201ENST00000258613 TONSLQ96HA7 1378 aa18.83■□□□□ 0.6
THSD1-201ENST00000258613 TCOF1Q13428 1488 aaKnown RBP18.82■□□□□ 0.6
THSD1-201ENST00000258613 CFDP1Q9UEE9 299 aaPredicted RBP18.82■□□□□ 0.6
THSD1-201ENST00000258613 CARMIL2Q6F5E8 1435 aa18.79■□□□□ 0.6
THSD1-201ENST00000258613 MIA2Q96PC5 1412 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms