RNA–Protein interactions for RNA: ENST00000247020.8

SDF2-201, Transcript of stromal cell derived factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDF2, Length 1,568 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-201ENST00000247020 ARHGAP35Q9NRY4 1499 aa22.32■■□□□ 1.16
SDF2-201ENST00000247020 SYNJ2O15056 1496 aa22.25■■□□□ 1.15
SDF2-201ENST00000247020 GRIN2AQ12879 1464 aa22.25■■□□□ 1.15
SDF2-201ENST00000247020 SAMD9Q5K651 1589 aa22.23■■□□□ 1.15
SDF2-201ENST00000247020 IQGAP2Q13576 1575 aa22.22■■□□□ 1.15
SDF2-201ENST00000247020 RANGAP1P46060 587 aaPredicted RBP22.18■■□□□ 1.14
SDF2-201ENST00000247020 TRIM26Q12899 539 aaPredicted RBP22.18■■□□□ 1.14
SDF2-201ENST00000247020 KIAA0586Q9BVV6 1533 aa22.15■■□□□ 1.14
SDF2-201ENST00000247020 UGGT2Q9NYU1 1516 aa22.13■■□□□ 1.13
SDF2-201ENST00000247020 NUP160Q12769 1436 aa22.1■■□□□ 1.13
SDF2-201ENST00000247020 CHMP7Q8WUX9 453 aaPredicted RBP22.09■■□□□ 1.13
SDF2-201ENST00000247020 CEP170Q5SW79 1584 aa22.09■■□□□ 1.13
SDF2-201ENST00000247020 MAP3K1Q13233 1512 aa22.08■■□□□ 1.13
SDF2-201ENST00000247020 APLP2Q06481 763 aa22.08■■□□□ 1.12
SDF2-201ENST00000247020 FMN1Q68DA7 1419 aa22.07■■□□□ 1.12
SDF2-201ENST00000247020 FHOD3Q2V2M9 1422 aa22.05■■□□□ 1.12
SDF2-201ENST00000247020 CHD1O14646 1710 aa22.04■■□□□ 1.12
SDF2-201ENST00000247020 FYCO1Q9BQS8 1478 aa22.04■■□□□ 1.12
SDF2-201ENST00000247020 PCF11O94913 1555 aaKnown RBP22.03■■□□□ 1.12
SDF2-201ENST00000247020 PCGF6Q9BYE7 350 aa22.03■■□□□ 1.12
SDF2-201ENST00000247020 CFAP43Q8NDM7 1665 aa22■■□□□ 1.11
SDF2-201ENST00000247020 CASKIN1Q8WXD9 1431 aa22■■□□□ 1.11
SDF2-201ENST00000247020 KIAA0556O60303 1618 aa22■■□□□ 1.11
SDF2-201ENST00000247020 TIAM1Q13009 1591 aa21.99■■□□□ 1.11
SDF2-201ENST00000247020 DISP1Q96F81 1524 aa21.94■■□□□ 1.1
SDF2-201ENST00000247020 FBLN2P98095 1184 aa21.94■■□□□ 1.1
SDF2-201ENST00000247020 P3H3Q8IVL6 736 aa21.94■■□□□ 1.1
SDF2-201ENST00000247020 PPARGC1BQ86YN6 1023 aaKnown RBP21.93■■□□□ 1.1
SDF2-201ENST00000247020 HECW1Q76N89 1606 aa21.88■■□□□ 1.09
SDF2-201ENST00000247020 CARMIL2Q6F5E8 1435 aa21.87■■□□□ 1.09
SDF2-201ENST00000247020 SHROOM2Q13796 1616 aa21.86■■□□□ 1.09
SDF2-201ENST00000247020 LRRIQ1Q96JM4 1722 aa21.85■■□□□ 1.09
SDF2-201ENST00000247020 CCDC18Q5T9S5 1454 aa21.84■■□□□ 1.09
SDF2-201ENST00000247020 LRRC9Q6ZRR7 1453 aa21.84■■□□□ 1.09
SDF2-201ENST00000247020 JPH4Q96JJ6 628 aa21.82■■□□□ 1.08
SDF2-201ENST00000247020 KANK4Q5T7N3 995 aaPredicted RBP21.79■■□□□ 1.08
SDF2-201ENST00000247020 CLASP1Q7Z460 1538 aa21.79■■□□□ 1.08
SDF2-201ENST00000247020 RAPGEF6Q8TEU7 1601 aa21.79■■□□□ 1.08
SDF2-201ENST00000247020 TTBK1Q5TCY1 1321 aaPredicted RBP21.76■■□□□ 1.07
SDF2-201ENST00000247020 EPRSP07814 1512 aaKnown RBP21.73■■□□□ 1.07
SDF2-201ENST00000247020 EHBP1L1Q8N3D4 1523 aa21.73■■□□□ 1.07
SDF2-201ENST00000247020 RRBP1Q9P2E9 1410 aaKnown RBP21.71■■□□□ 1.07
SDF2-201ENST00000247020 PRG4Q92954 1404 aaPredicted RBP21.71■■□□□ 1.07
SDF2-201ENST00000247020 ATP1B4Q9UN42 357 aaPredicted RBP21.7■■□□□ 1.06
SDF2-201ENST00000247020 SUPT6HQ7KZ85 1726 aaKnown RBP21.67■■□□□ 1.06
SDF2-201ENST00000247020 ABCA8O94911 1581 aa21.67■■□□□ 1.06
SDF2-201ENST00000247020 NUP153P49790 1475 aaKnown RBP21.66■■□□□ 1.06
SDF2-201ENST00000247020 MTUS2Q5JR59 1369 aa21.65■■□□□ 1.06
SDF2-201ENST00000247020 CDK13Q14004 1512 aaKnown RBP21.6■■□□□ 1.05
SDF2-201ENST00000247020 PLB1Q6P1J6 1458 aa21.6■■□□□ 1.05
SDF2-201ENST00000247020 ARHGEF11O15085 1522 aa21.6■■□□□ 1.05
SDF2-201ENST00000247020 MAGI3Q5TCQ9 1506 aa21.59■■□□□ 1.05
SDF2-201ENST00000247020 CCNB3Q8WWL7 1395 aa21.59■■□□□ 1.05
SDF2-201ENST00000247020 PTPRGP23470 1445 aa21.58■■□□□ 1.04
SDF2-201ENST00000247020 PHLDB1Q86UU1 1377 aa21.57■■□□□ 1.04
SDF2-201ENST00000247020 NCOA2Q15596 1464 aa21.55■■□□□ 1.04
SDF2-201ENST00000247020 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.55■■□□□ 1.04
SDF2-201ENST00000247020 ERCC6L2Q5T890 1561 aa21.53■■□□□ 1.04
SDF2-201ENST00000247020 CDK11AQ9UQ88 783 aaPredicted RBP21.53■■□□□ 1.04
SDF2-201ENST00000247020 ADCY10Q96PN6 1610 aa21.52■■□□□ 1.04
SDF2-201ENST00000247020 MYOM3Q5VTT5 1437 aa21.5■■□□□ 1.03
SDF2-201ENST00000247020 UACAQ9BZF9 1416 aa21.5■■□□□ 1.03
SDF2-201ENST00000247020 FGD6Q6ZV73 1430 aa21.48■■□□□ 1.03
SDF2-201ENST00000247020 ABCC2Q92887 1545 aa21.48■■□□□ 1.03
SDF2-201ENST00000247020 TROQ12816 1431 aaPredicted RBP21.48■■□□□ 1.03
SDF2-201ENST00000247020 OSCARQ8IYS5 282 aa21.47■■□□□ 1.03
SDF2-201ENST00000247020 UHRF1BP1LA0JNW5 1464 aa21.46■■□□□ 1.03
SDF2-201ENST00000247020 HRCP23327 699 aa21.46■■□□□ 1.03
SDF2-201ENST00000247020 ATP10BO94823 1461 aa21.45■■□□□ 1.03
SDF2-201ENST00000247020 MIA2Q96PC5 1412 aa21.43■■□□□ 1.02
SDF2-201ENST00000247020 ITSN2Q9NZM3 1697 aa21.42■■□□□ 1.02
SDF2-201ENST00000247020 PTPN23Q9H3S7 1636 aa21.41■■□□□ 1.02
SDF2-201ENST00000247020 TCOF1Q13428 1488 aaKnown RBP21.4■■□□□ 1.02
SDF2-201ENST00000247020 HNRNPUL2Q1KMD3 747 aaKnown RBP21.4■■□□□ 1.02
SDF2-201ENST00000247020 KIF14Q15058 1648 aa21.39■■□□□ 1.02
SDF2-201ENST00000247020 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.38■■□□□ 1.01
SDF2-201ENST00000247020 ARID3CA6NKF2 412 aa21.36■■□□□ 1.01
SDF2-201ENST00000247020 ZEB1P37275 1124 aaPredicted RBP21.36■■□□□ 1.01
SDF2-201ENST00000247020 KDM5BQ9UGL1 1544 aa21.34■■□□□ 1.01
SDF2-201ENST00000247020 PLEKHD1A6NEE1 506 aa21.34■■□□□ 1.01
SDF2-201ENST00000247020 ZCCHC11Q5TAX3 1644 aaKnown RBP21.34■■□□□ 1.01
SDF2-201ENST00000247020 FAM50AQ14320 339 aaKnown RBP21.31■■□□□ 1
SDF2-201ENST00000247020 ABCC10Q5T3U5 1492 aa21.29■■□□□ 1
SDF2-201ENST00000247020 CDC42BPAQ5VT25 1732 aa21.29■■□□□ 1
SDF2-201ENST00000247020 GPATCH8Q9UKJ3 1502 aaKnown RBP21.26■□□□□ 0.99
SDF2-201ENST00000247020 DNMT1P26358 1616 aaKnown RBP21.23■□□□□ 0.99
SDF2-201ENST00000247020 CCER1Q8TC90 406 aaPredicted RBP21.23■□□□□ 0.99
SDF2-201ENST00000247020 PREX2Q70Z35 1606 aa21.22■□□□□ 0.99
SDF2-201ENST00000247020 SETD5Q9C0A6 1442 aa21.22■□□□□ 0.99
SDF2-201ENST00000247020 AKNAQ7Z591 1439 aa21.2■□□□□ 0.98
SDF2-201ENST00000247020 ITGAEP38570 1179 aa21.19■□□□□ 0.98
SDF2-201ENST00000247020 MYO5CQ9NQX4 1742 aa21.18■□□□□ 0.98
SDF2-201ENST00000247020 CAMSAP2Q08AD1 1489 aa21.17■□□□□ 0.98
SDF2-201ENST00000247020 GCC2Q8IWJ2 1684 aa21.17■□□□□ 0.98
SDF2-201ENST00000247020 CDC42BPBQ9Y5S2 1711 aa21.17■□□□□ 0.98
SDF2-201ENST00000247020 HFM1A2PYH4 1435 aa21.16■□□□□ 0.98
SDF2-201ENST00000247020 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.16■□□□□ 0.98
SDF2-201ENST00000247020 PTPRKQ15262 1439 aa21.16■□□□□ 0.98
SDF2-201ENST00000247020 CROCC2H7BZ55 1655 aa21.15■□□□□ 0.98
SDF2-201ENST00000247020 CFDP1Q9UEE9 299 aaPredicted RBP21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms