RNA–Protein interactions for RNA: ENST00000244728.9

COL21A1-201, Transcript of collagen type XXI alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL21A1, Length 4,339 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1-201ENST00000244728 SIN3AQ96ST3 1273 aa12.68□□□□□ -0.38
COL21A1-201ENST00000244728 PLPPR3Q6T4P5 718 aa12.67□□□□□ -0.38
COL21A1-201ENST00000244728 KCNH8Q96L42 1107 aa12.67□□□□□ -0.38
COL21A1-201ENST00000244728 SENP3-EIF4A1A0A087X0R7 540 aa12.66□□□□□ -0.38
COL21A1-201ENST00000244728 RUSC2Q8N2Y8 1516 aa12.66□□□□□ -0.38
COL21A1-201ENST00000244728 RBM19Q9Y4C8 960 aaKnown RBP12.65□□□□□ -0.38
COL21A1-201ENST00000244728 ANP32AP39687 249 aaKnown RBP12.64□□□□□ -0.39
COL21A1-201ENST00000244728 TSPY4P0CV99 314 aa12.64□□□□□ -0.39
COL21A1-201ENST00000244728 TSPY10P0CW01 314 aa12.64□□□□□ -0.39
COL21A1-201ENST00000244728 NBR1Q14596 966 aa12.64□□□□□ -0.39
COL21A1-201ENST00000244728 KANK4Q5T7N3 995 aaPredicted RBP12.64□□□□□ -0.39
COL21A1-201ENST00000244728 KIF27Q86VH2 1401 aa12.63□□□□□ -0.39
COL21A1-201ENST00000244728 CCNB3Q8WWL7 1395 aa12.61□□□□□ -0.39
COL21A1-201ENST00000244728 NPM2Q86SE8 214 aaKnown RBP12.6□□□□□ -0.39
COL21A1-201ENST00000244728 NPM1P06748 294 aaKnown RBP eCLIP12.58□□□□□ -0.39
COL21A1-201ENST00000244728 DHX57Q6P158 1386 aaKnown RBP12.58□□□□□ -0.4
COL21A1-201ENST00000244728 RGL3Q3MIN7 710 aa12.58□□□□□ -0.4
COL21A1-201ENST00000244728 MRS2Q9HD23 443 aa12.58□□□□□ -0.4
COL21A1-201ENST00000244728 SLC24A1O60721 1099 aa12.56□□□□□ -0.4
COL21A1-201ENST00000244728 TOP2AP11388 1531 aaKnown RBP12.55□□□□□ -0.4
COL21A1-201ENST00000244728 PLEKHD1A6NEE1 506 aa12.54□□□□□ -0.4
COL21A1-201ENST00000244728 CCDC136Q96JN2 1154 aa12.54□□□□□ -0.4
COL21A1-201ENST00000244728 CUX2O14529 1486 aa12.53□□□□□ -0.4
COL21A1-201ENST00000244728 CARMIL1Q5VZK9 1371 aa12.53□□□□□ -0.4
COL21A1-201ENST00000244728 CFDP1Q9UEE9 299 aaPredicted RBP12.52□□□□□ -0.4
COL21A1-201ENST00000244728 STAG3Q9UJ98 1225 aa12.52□□□□□ -0.41
COL21A1-201ENST00000244728 TMC1Q8TDI8 760 aa12.51□□□□□ -0.41
COL21A1-201ENST00000244728 RAPGEF2Q9Y4G8 1499 aa12.51□□□□□ -0.41
COL21A1-201ENST00000244728 RAB3GAP2Q9H2M9 1393 aa12.51□□□□□ -0.41
COL21A1-201ENST00000244728 CANXP27824 592 aaKnown RBP12.51□□□□□ -0.41
COL21A1-201ENST00000244728 CCER2I3L3R5 266 aa12.51□□□□□ -0.41
COL21A1-201ENST00000244728 ZBTB47Q9UFB7 747 aaPredicted RBP12.51□□□□□ -0.41
COL21A1-201ENST00000244728 EIF4G2P78344 907 aaKnown RBP eCLIP12.5□□□□□ -0.41
COL21A1-201ENST00000244728 TDRD9Q8NDG6 1382 aaKnown RBP12.49□□□□□ -0.41
COL21A1-201ENST00000244728 ESF1Q9H501 851 aaKnown RBP12.48□□□□□ -0.41
COL21A1-201ENST00000244728 PPP4R2Q9NY27 417 aa12.48□□□□□ -0.41
COL21A1-201ENST00000244728 B4GALNT3Q6L9W6 998 aa12.48□□□□□ -0.41
COL21A1-201ENST00000244728 SETD5Q9C0A6 1442 aa12.47□□□□□ -0.41
COL21A1-201ENST00000244728 TIMELESSQ9UNS1 1208 aa12.44□□□□□ -0.42
COL21A1-201ENST00000244728 FOXD1Q16676 465 aa12.43□□□□□ -0.42
COL21A1-201ENST00000244728 PPP1R15AO75807 674 aaPredicted RBP12.41□□□□□ -0.42
COL21A1-201ENST00000244728 SMARCA2P51531 1590 aa12.41□□□□□ -0.42
COL21A1-201ENST00000244728 NEFMP07197 916 aa12.41□□□□□ -0.42
COL21A1-201ENST00000244728 DEKP35659 375 aaKnown RBP12.41□□□□□ -0.42
COL21A1-201ENST00000244728 NOP58Q9Y2X3 529 aaKnown RBP12.41□□□□□ -0.42
COL21A1-201ENST00000244728 ERCC6Q03468 1493 aa12.39□□□□□ -0.43
COL21A1-201ENST00000244728 SMARCA4P51532 1647 aa12.39□□□□□ -0.43
COL21A1-201ENST00000244728 EIF5BO60841 1220 aaKnown RBP12.38□□□□□ -0.43
COL21A1-201ENST00000244728 PLEKHG5O94827 1062 aa12.38□□□□□ -0.43
COL21A1-201ENST00000244728 EIF4G1Q04637 1599 aaKnown RBP12.37□□□□□ -0.43
COL21A1-201ENST00000244728 CARD11Q9BXL7 1154 aa12.35□□□□□ -0.43
COL21A1-201ENST00000244728 HSPA5P11021 654 aaKnown RBP12.34□□□□□ -0.43
COL21A1-201ENST00000244728 KIF21BO75037 1637 aa12.34□□□□□ -0.43
COL21A1-201ENST00000244728 ATAD2BQ9ULI0 1458 aa12.34□□□□□ -0.43
COL21A1-201ENST00000244728 FHAD1B1AJZ9 1412 aa12.33□□□□□ -0.44
COL21A1-201ENST00000244728 WDR43Q15061 677 aaKnown RBP eCLIP12.33□□□□□ -0.44
COL21A1-201ENST00000244728 RTN4Q9NQC3 1192 aaKnown RBP12.32□□□□□ -0.44
COL21A1-201ENST00000244728 LAS1LQ9Y4W2 734 aaKnown RBP12.3□□□□□ -0.44
COL21A1-201ENST00000244728 CADPSQ9ULU8 1353 aa12.3□□□□□ -0.44
COL21A1-201ENST00000244728 ERICH6BQ5W0A0 696 aa12.3□□□□□ -0.44
COL21A1-201ENST00000244728 DCAF11Q8TEB1 546 aa12.3□□□□□ -0.44
COL21A1-201ENST00000244728 ARHGAP35Q9NRY4 1499 aa12.29□□□□□ -0.44
COL21A1-201ENST00000244728 FHOD3Q2V2M9 1422 aa12.27□□□□□ -0.44
COL21A1-201ENST00000244728 FANCIQ9NVI1 1328 aa12.27□□□□□ -0.45
COL21A1-201ENST00000244728 TNNT2P45379 298 aaPredicted RBP12.26□□□□□ -0.45
COL21A1-201ENST00000244728 NEUROD2Q15784 382 aa12.26□□□□□ -0.45
COL21A1-201ENST00000244728 PKD2Q13563 968 aa12.25□□□□□ -0.45
COL21A1-201ENST00000244728 CC2D1BQ5T0F9 858 aaKnown RBP12.24□□□□□ -0.45
COL21A1-201ENST00000244728 PPM1GO15355 546 aaPredicted RBP12.23□□□□□ -0.45
COL21A1-201ENST00000244728 SYNJ1O43426 1573 aa12.23□□□□□ -0.45
COL21A1-201ENST00000244728 PDS5BQ9NTI5 1447 aa12.23□□□□□ -0.45
COL21A1-201ENST00000244728 ARID4BQ4LE39 1312 aaPredicted RBP12.22□□□□□ -0.45
COL21A1-201ENST00000244728 RRBP1Q9P2E9 1410 aaKnown RBP12.21□□□□□ -0.45
COL21A1-201ENST00000244728 KNSTRNQ9Y448 316 aa12.21□□□□□ -0.45
COL21A1-201ENST00000244728 ARAP1Q96P48 1450 aa12.21□□□□□ -0.46
COL21A1-201ENST00000244728 MPHOSPH9Q99550 1183 aa12.21□□□□□ -0.46
COL21A1-201ENST00000244728 MLECQ14165 292 aa12.2□□□□□ -0.46
COL21A1-201ENST00000244728 GGT6Q6P531 493 aa12.19□□□□□ -0.46
COL21A1-201ENST00000244728 SAFB2Q14151 953 aaKnown RBP eCLIP12.19□□□□□ -0.46
COL21A1-201ENST00000244728 DDRGK1Q96HY6 314 aa12.19□□□□□ -0.46
COL21A1-201ENST00000244728 ZBTB7CA1YPR0 619 aa12.18□□□□□ -0.46
COL21A1-201ENST00000244728 HNRNPMP52272 730 aaKnown RBP eCLIP12.18□□□□□ -0.46
COL21A1-201ENST00000244728 L3MBTL2Q969R5 705 aa12.18□□□□□ -0.46
COL21A1-201ENST00000244728 ARXQ96QS3 562 aa12.18□□□□□ -0.46
COL21A1-201ENST00000244728 C14orf37Q86TY3 774 aa12.18□□□□□ -0.46
COL21A1-201ENST00000244728 IPO9Q96P70 1041 aaKnown RBP12.18□□□□□ -0.46
COL21A1-201ENST00000244728 PHLDB1Q86UU1 1377 aa12.17□□□□□ -0.46
COL21A1-201ENST00000244728 JPH4Q96JJ6 628 aa12.17□□□□□ -0.46
COL21A1-201ENST00000244728 PRKRIP1Q9H875 184 aaPredicted RBP12.16□□□□□ -0.46
COL21A1-201ENST00000244728 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.15□□□□□ -0.46
COL21A1-201ENST00000244728 NUDCQ9Y266 331 aa12.15□□□□□ -0.46
COL21A1-201ENST00000244728 FMN1Q68DA7 1419 aa12.14□□□□□ -0.47
COL21A1-201ENST00000244728 MSH5O43196 834 aa12.14□□□□□ -0.47
COL21A1-201ENST00000244728 WDR97A6NE52 1622 aa12.14□□□□□ -0.47
COL21A1-201ENST00000244728 NUP155O75694 1391 aa12.14□□□□□ -0.47
COL21A1-201ENST00000244728 IGF1RP08069 1367 aa12.13□□□□□ -0.47
COL21A1-201ENST00000244728 ZBED9Q6R2W3 1325 aa12.12□□□□□ -0.47
COL21A1-201ENST00000244728 CCDC18Q5T9S5 1454 aa12.12□□□□□ -0.47
COL21A1-201ENST00000244728 FANCD2Q9BXW9 1451 aa12.12□□□□□ -0.47
COL21A1-201ENST00000244728 POGKQ9P215 609 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms