RNA–Protein interactions for RNA: ENST00000244303.10

HIF3A-202, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2 BASIC

Gene HIF3A, Length 2,250 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-202ENST00000244303 WDR97A6NE52 1622 aa21.24■□□□□ 0.99
HIF3A-202ENST00000244303 KIF21AQ7Z4S6 1674 aa21.24■□□□□ 0.99
HIF3A-202ENST00000244303 CCNB3Q8WWL7 1395 aa21.22■□□□□ 0.99
HIF3A-202ENST00000244303 CUL7Q14999 1698 aa21.22■□□□□ 0.99
HIF3A-202ENST00000244303 TIAM1Q13009 1591 aa21.21■□□□□ 0.99
HIF3A-202ENST00000244303 TDRD9Q8NDG6 1382 aaKnown RBP21.19■□□□□ 0.98
HIF3A-202ENST00000244303 MIER1Q8N108 512 aa21.19■□□□□ 0.98
HIF3A-202ENST00000244303 GTF3C3Q9Y5Q9 886 aa21.19■□□□□ 0.98
HIF3A-202ENST00000244303 MAP3K1Q13233 1512 aa21.18■□□□□ 0.98
HIF3A-202ENST00000244303 ABCA5Q8WWZ7 1642 aa21.16■□□□□ 0.98
HIF3A-202ENST00000244303 GAPVD1Q14C86 1478 aa21.14■□□□□ 0.97
HIF3A-202ENST00000244303 P3H3Q8IVL6 736 aa21.13■□□□□ 0.97
HIF3A-202ENST00000244303 YTHDC1Q96MU7 727 aaKnown RBP21.12■□□□□ 0.97
HIF3A-202ENST00000244303 LRRC9Q6ZRR7 1453 aa21.11■□□□□ 0.97
HIF3A-202ENST00000244303 ITGAEP38570 1179 aa21.11■□□□□ 0.97
HIF3A-202ENST00000244303 FHAD1B1AJZ9 1412 aa21.11■□□□□ 0.97
HIF3A-202ENST00000244303 CFAP43Q8NDM7 1665 aa21.1■□□□□ 0.97
HIF3A-202ENST00000244303 PCF11O94913 1555 aaKnown RBP21.1■□□□□ 0.97
HIF3A-202ENST00000244303 CTTNBP2Q8WZ74 1663 aa21.09■□□□□ 0.97
HIF3A-202ENST00000244303 TARBP1Q13395 1621 aaKnown RBP21.09■□□□□ 0.97
HIF3A-202ENST00000244303 EFCAB5A4FU69 1503 aa21.07■□□□□ 0.96
HIF3A-202ENST00000244303 FHOD3Q2V2M9 1422 aa21.06■□□□□ 0.96
HIF3A-202ENST00000244303 MRC2Q9UBG0 1479 aa21.04■□□□□ 0.96
HIF3A-202ENST00000244303 PHLDB1Q86UU1 1377 aa21.03■□□□□ 0.96
HIF3A-202ENST00000244303 RAB3GAP2Q9H2M9 1393 aa21.03■□□□□ 0.96
HIF3A-202ENST00000244303 ATP1B4Q9UN42 357 aaPredicted RBP20.99■□□□□ 0.95
HIF3A-202ENST00000244303 MAPKBP1O60336 1514 aa20.97■□□□□ 0.95
HIF3A-202ENST00000244303 AQRO60306 1485 aaKnown RBP eCLIP20.97■□□□□ 0.95
HIF3A-202ENST00000244303 CASKIN1Q8WXD9 1431 aa20.97■□□□□ 0.95
HIF3A-202ENST00000244303 FYCO1Q9BQS8 1478 aa20.97■□□□□ 0.95
HIF3A-202ENST00000244303 SETD5Q9C0A6 1442 aa20.95■□□□□ 0.94
HIF3A-202ENST00000244303 FMN1Q68DA7 1419 aa20.94■□□□□ 0.94
HIF3A-202ENST00000244303 PBRM1Q86U86 1689 aa20.92■□□□□ 0.94
HIF3A-202ENST00000244303 FAM50AQ14320 339 aaKnown RBP20.92■□□□□ 0.94
HIF3A-202ENST00000244303 SAMD9Q5K651 1589 aa20.92■□□□□ 0.94
HIF3A-202ENST00000244303 WDR62O43379 1518 aa20.88■□□□□ 0.93
HIF3A-202ENST00000244303 IFT140Q96RY7 1462 aa20.87■□□□□ 0.93
HIF3A-202ENST00000244303 SNAPC4Q5SXM2 1469 aa20.87■□□□□ 0.93
HIF3A-202ENST00000244303 GRIN2BQ13224 1484 aa20.87■□□□□ 0.93
HIF3A-202ENST00000244303 ADAMTS12P58397 1594 aa20.85■□□□□ 0.93
HIF3A-202ENST00000244303 ZNF608Q9ULD9 1512 aaPredicted RBP20.83■□□□□ 0.93
HIF3A-202ENST00000244303 LRRIQ1Q96JM4 1722 aa20.82■□□□□ 0.92
HIF3A-202ENST00000244303 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.79■□□□□ 0.92
HIF3A-202ENST00000244303 ERCC6Q03468 1493 aa20.78■□□□□ 0.92
HIF3A-202ENST00000244303 IQGAP2Q13576 1575 aa20.77■□□□□ 0.91
HIF3A-202ENST00000244303 MYT1Q01538 1121 aa20.76■□□□□ 0.91
HIF3A-202ENST00000244303 FGD6Q6ZV73 1430 aa20.75■□□□□ 0.91
HIF3A-202ENST00000244303 SIN3AQ96ST3 1273 aa20.75■□□□□ 0.91
HIF3A-202ENST00000244303 MTUS2Q5JR59 1369 aa20.74■□□□□ 0.91
HIF3A-202ENST00000244303 THOC2Q8NI27 1593 aaKnown RBP20.73■□□□□ 0.91
HIF3A-202ENST00000244303 EIF4G3O43432 1585 aaKnown RBP20.69■□□□□ 0.9
HIF3A-202ENST00000244303 SUPT6HQ7KZ85 1726 aaKnown RBP20.67■□□□□ 0.9
HIF3A-202ENST00000244303 UGGT2Q9NYU1 1516 aa20.66■□□□□ 0.9
HIF3A-202ENST00000244303 NCOA2Q15596 1464 aa20.66■□□□□ 0.9
HIF3A-202ENST00000244303 KIAA0586Q9BVV6 1533 aa20.64■□□□□ 0.9
HIF3A-202ENST00000244303 CCDC18Q5T9S5 1454 aa20.64■□□□□ 0.9
HIF3A-202ENST00000244303 EHBP1L1Q8N3D4 1523 aa20.64■□□□□ 0.89
HIF3A-202ENST00000244303 TIMELESSQ9UNS1 1208 aa20.64■□□□□ 0.89
HIF3A-202ENST00000244303 PTPRKQ15262 1439 aa20.63■□□□□ 0.89
HIF3A-202ENST00000244303 GRIN2AQ12879 1464 aa20.63■□□□□ 0.89
HIF3A-202ENST00000244303 PTPN23Q9H3S7 1636 aa20.63■□□□□ 0.89
HIF3A-202ENST00000244303 MYOM3Q5VTT5 1437 aa20.62■□□□□ 0.89
HIF3A-202ENST00000244303 HECW1Q76N89 1606 aa20.62■□□□□ 0.89
HIF3A-202ENST00000244303 HFM1A2PYH4 1435 aa20.61■□□□□ 0.89
HIF3A-202ENST00000244303 MAGI3Q5TCQ9 1506 aa20.6■□□□□ 0.89
HIF3A-202ENST00000244303 MAGI1Q96QZ7 1491 aaPredicted RBP20.58■□□□□ 0.89
HIF3A-202ENST00000244303 EPRSP07814 1512 aaKnown RBP20.58■□□□□ 0.89
HIF3A-202ENST00000244303 PPP1R15AO75807 674 aaPredicted RBP20.57■□□□□ 0.88
HIF3A-202ENST00000244303 DISP1Q96F81 1524 aa20.57■□□□□ 0.88
HIF3A-202ENST00000244303 UACAQ9BZF9 1416 aa20.56■□□□□ 0.88
HIF3A-202ENST00000244303 ARHGEF11O15085 1522 aa20.56■□□□□ 0.88
HIF3A-202ENST00000244303 CHMP7Q8WUX9 453 aaPredicted RBP20.55■□□□□ 0.88
HIF3A-202ENST00000244303 NAIPQ13075 1403 aa20.55■□□□□ 0.88
HIF3A-202ENST00000244303 KIAA0556O60303 1618 aa20.55■□□□□ 0.88
HIF3A-202ENST00000244303 DDX10Q13206 875 aaKnown RBP20.54■□□□□ 0.88
HIF3A-202ENST00000244303 SYNJ2O15056 1496 aa20.54■□□□□ 0.88
HIF3A-202ENST00000244303 KCNH8Q96L42 1107 aa20.53■□□□□ 0.88
HIF3A-202ENST00000244303 CDK13Q14004 1512 aaKnown RBP20.53■□□□□ 0.88
HIF3A-202ENST00000244303 TONSLQ96HA7 1378 aa20.51■□□□□ 0.87
HIF3A-202ENST00000244303 ARID3CA6NKF2 412 aa20.5■□□□□ 0.87
HIF3A-202ENST00000244303 CEP170Q5SW79 1584 aa20.49■□□□□ 0.87
HIF3A-202ENST00000244303 FBLN2P98095 1184 aa20.49■□□□□ 0.87
HIF3A-202ENST00000244303 HIRIP3Q9BW71 556 aaPredicted RBP20.49■□□□□ 0.87
HIF3A-202ENST00000244303 GCC2Q8IWJ2 1684 aa20.47■□□□□ 0.87
HIF3A-202ENST00000244303 TCOF1Q13428 1488 aaKnown RBP20.47■□□□□ 0.87
HIF3A-202ENST00000244303 SUPT16HQ9Y5B9 1047 aaKnown RBP20.46■□□□□ 0.87
HIF3A-202ENST00000244303 NUP153P49790 1475 aaKnown RBP20.43■□□□□ 0.86
HIF3A-202ENST00000244303 RAPGEF6Q8TEU7 1601 aa20.43■□□□□ 0.86
HIF3A-202ENST00000244303 NUP160Q12769 1436 aa20.43■□□□□ 0.86
HIF3A-202ENST00000244303 MIA2Q96PC5 1412 aa20.41■□□□□ 0.86
HIF3A-202ENST00000244303 RRP7BPQ9NSQ0 103 aa20.41■□□□□ 0.86
HIF3A-202ENST00000244303 JPH4Q96JJ6 628 aa20.4■□□□□ 0.86
HIF3A-202ENST00000244303 CHIC2Q9UKJ5 165 aa20.39■□□□□ 0.86
HIF3A-202ENST00000244303 KDM5BQ9UGL1 1544 aa20.39■□□□□ 0.85
HIF3A-202ENST00000244303 KDM6BO15054 1643 aa20.38■□□□□ 0.85
HIF3A-202ENST00000244303 CARMIL2Q6F5E8 1435 aa20.36■□□□□ 0.85
HIF3A-202ENST00000244303 CDK11AQ9UQ88 783 aaPredicted RBP20.36■□□□□ 0.85
HIF3A-202ENST00000244303 AKNAQ7Z591 1439 aa20.36■□□□□ 0.85
HIF3A-202ENST00000244303 DENND4BO75064 1496 aaPredicted RBP20.35■□□□□ 0.85
HIF3A-202ENST00000244303 PLB1Q6P1J6 1458 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms