RNA–Protein interactions for RNA: ENST00000236671.6

CTSD-201, Transcript of cathepsin D, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CTSD, Length 2,123 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-201ENST00000236671 HNRNPUL2Q1KMD3 747 aaKnown RBP23.27■■□□□ 1.32
CTSD-201ENST00000236671 SNAPC4Q5SXM2 1469 aa23.26■■□□□ 1.31
CTSD-201ENST00000236671 ERICH3Q5RHP9 1530 aa23.26■■□□□ 1.31
CTSD-201ENST00000236671 KIF27Q86VH2 1401 aa23.25■■□□□ 1.31
CTSD-201ENST00000236671 GRIN2BQ13224 1484 aa23.24■■□□□ 1.31
CTSD-201ENST00000236671 PRXQ9BXM0 1461 aa23.24■■□□□ 1.31
CTSD-201ENST00000236671 CENPBP07199 599 aaPredicted RBP23.22■■□□□ 1.31
CTSD-201ENST00000236671 FBLN2P98095 1184 aa23.21■■□□□ 1.31
CTSD-201ENST00000236671 APLP2Q06481 763 aa23.21■■□□□ 1.31
CTSD-201ENST00000236671 IGF1RP08069 1367 aa23.18■■□□□ 1.3
CTSD-201ENST00000236671 CHD1O14646 1710 aa23.17■■□□□ 1.3
CTSD-201ENST00000236671 ARAP1Q96P48 1450 aa23.15■■□□□ 1.3
CTSD-201ENST00000236671 RANGAP1P46060 587 aaPredicted RBP23.14■■□□□ 1.3
CTSD-201ENST00000236671 ADAMTS12P58397 1594 aa23.12■■□□□ 1.29
CTSD-201ENST00000236671 MAGI1Q96QZ7 1491 aaPredicted RBP23.1■■□□□ 1.29
CTSD-201ENST00000236671 GTF3C3Q9Y5Q9 886 aa23.09■■□□□ 1.29
CTSD-201ENST00000236671 CHMP7Q8WUX9 453 aaPredicted RBP23.08■■□□□ 1.28
CTSD-201ENST00000236671 SYNJ2O15056 1496 aa23.05■■□□□ 1.28
CTSD-201ENST00000236671 CARMIL1Q5VZK9 1371 aa23.03■■□□□ 1.28
CTSD-201ENST00000236671 FHAD1B1AJZ9 1412 aa23.02■■□□□ 1.28
CTSD-201ENST00000236671 CUL7Q14999 1698 aa23.01■■□□□ 1.27
CTSD-201ENST00000236671 GRIN2AQ12879 1464 aa23■■□□□ 1.27
CTSD-201ENST00000236671 KANK4Q5T7N3 995 aaPredicted RBP22.96■■□□□ 1.27
CTSD-201ENST00000236671 CLSPNQ9HAW4 1339 aa22.96■■□□□ 1.27
CTSD-201ENST00000236671 MIER1Q8N108 512 aa22.96■■□□□ 1.27
CTSD-201ENST00000236671 DHX57Q6P158 1386 aaKnown RBP22.95■■□□□ 1.26
CTSD-201ENST00000236671 CEP170Q5SW79 1584 aa22.95■■□□□ 1.26
CTSD-201ENST00000236671 RRBP1Q9P2E9 1410 aaKnown RBP22.94■■□□□ 1.26
CTSD-201ENST00000236671 ARHGAP35Q9NRY4 1499 aa22.92■■□□□ 1.26
CTSD-201ENST00000236671 OSCARQ8IYS5 282 aa22.91■■□□□ 1.26
CTSD-201ENST00000236671 YTHDC1Q96MU7 727 aaKnown RBP22.87■■□□□ 1.25
CTSD-201ENST00000236671 NUP160Q12769 1436 aa22.83■■□□□ 1.24
CTSD-201ENST00000236671 CLASP1Q7Z460 1538 aa22.79■■□□□ 1.24
CTSD-201ENST00000236671 CCNB3Q8WWL7 1395 aa22.79■■□□□ 1.24
CTSD-201ENST00000236671 CTTNBP2Q8WZ74 1663 aa22.74■■□□□ 1.23
CTSD-201ENST00000236671 ERCC6L2Q5T890 1561 aa22.73■■□□□ 1.23
CTSD-201ENST00000236671 MAP3K1Q13233 1512 aa22.72■■□□□ 1.23
CTSD-201ENST00000236671 TIAM1Q13009 1591 aa22.72■■□□□ 1.23
CTSD-201ENST00000236671 KIAA0586Q9BVV6 1533 aa22.68■■□□□ 1.22
CTSD-201ENST00000236671 IQGAP2Q13576 1575 aa22.68■■□□□ 1.22
CTSD-201ENST00000236671 DNAJC5Q9H3Z4 198 aa22.67■■□□□ 1.22
CTSD-201ENST00000236671 JPH4Q96JJ6 628 aa22.66■■□□□ 1.22
CTSD-201ENST00000236671 SHROOM2Q13796 1616 aa22.63■■□□□ 1.21
CTSD-201ENST00000236671 ARHGEF11O15085 1522 aa22.62■■□□□ 1.21
CTSD-201ENST00000236671 LRRC9Q6ZRR7 1453 aa22.61■■□□□ 1.21
CTSD-201ENST00000236671 RIMBP3CA6NJZ7 1639 aa22.61■■□□□ 1.21
CTSD-201ENST00000236671 RIMBP3BA6NNM3 1639 aa22.61■■□□□ 1.21
CTSD-201ENST00000236671 RIMBP3Q9UFD9 1639 aa22.61■■□□□ 1.21
CTSD-201ENST00000236671 PRG4Q92954 1404 aaPredicted RBP22.6■■□□□ 1.21
CTSD-201ENST00000236671 P3H3Q8IVL6 736 aa22.6■■□□□ 1.21
CTSD-201ENST00000236671 RAB3GAP2Q9H2M9 1393 aa22.59■■□□□ 1.21
CTSD-201ENST00000236671 MAPKBP1O60336 1514 aa22.59■■□□□ 1.21
CTSD-201ENST00000236671 ITGAEP38570 1179 aa22.57■■□□□ 1.2
CTSD-201ENST00000236671 CFAP43Q8NDM7 1665 aa22.57■■□□□ 1.2
CTSD-201ENST00000236671 DISP1Q96F81 1524 aa22.54■■□□□ 1.2
CTSD-201ENST00000236671 PCF11O94913 1555 aaKnown RBP22.54■■□□□ 1.2
CTSD-201ENST00000236671 PHLDB1Q86UU1 1377 aa22.53■■□□□ 1.2
CTSD-201ENST00000236671 UGGT2Q9NYU1 1516 aa22.51■■□□□ 1.19
CTSD-201ENST00000236671 SETD5Q9C0A6 1442 aa22.5■■□□□ 1.19
CTSD-201ENST00000236671 KIAA0556O60303 1618 aa22.48■■□□□ 1.19
CTSD-201ENST00000236671 CYB5RLQ6IPT4 315 aa22.47■■□□□ 1.19
CTSD-201ENST00000236671 FHOD3Q2V2M9 1422 aa22.44■■□□□ 1.18
CTSD-201ENST00000236671 SAMD9Q5K651 1589 aa22.44■■□□□ 1.18
CTSD-201ENST00000236671 EFCAB5A4FU69 1503 aa22.43■■□□□ 1.18
CTSD-201ENST00000236671 FYCO1Q9BQS8 1478 aa22.42■■□□□ 1.18
CTSD-201ENST00000236671 CARMIL2Q6F5E8 1435 aa22.39■■□□□ 1.18
CTSD-201ENST00000236671 CASKIN1Q8WXD9 1431 aa22.38■■□□□ 1.17
CTSD-201ENST00000236671 FAM50AQ14320 339 aaKnown RBP22.37■■□□□ 1.17
CTSD-201ENST00000236671 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.33■■□□□ 1.173e-7■■■□□ 14.6
CTSD-201ENST00000236671 PTPRGP23470 1445 aa22.33■■□□□ 1.16
CTSD-201ENST00000236671 ARID3CA6NKF2 412 aa22.33■■□□□ 1.16
CTSD-201ENST00000236671 PLB1Q6P1J6 1458 aa22.32■■□□□ 1.16
CTSD-201ENST00000236671 ATP1B4Q9UN42 357 aaPredicted RBP22.29■■□□□ 1.16
CTSD-201ENST00000236671 SIN3AQ96ST3 1273 aa22.28■■□□□ 1.16
CTSD-201ENST00000236671 SUPT16HQ9Y5B9 1047 aaKnown RBP22.27■■□□□ 1.15
CTSD-201ENST00000236671 ADCY10Q96PN6 1610 aa22.26■■□□□ 1.15
CTSD-201ENST00000236671 FMN1Q68DA7 1419 aa22.25■■□□□ 1.15
CTSD-201ENST00000236671 TIMELESSQ9UNS1 1208 aa22.25■■□□□ 1.15
CTSD-201ENST00000236671 FGD6Q6ZV73 1430 aa22.23■■□□□ 1.15
CTSD-201ENST00000236671 KCNH8Q96L42 1107 aa22.2■■□□□ 1.14
CTSD-201ENST00000236671 ABCA8O94911 1581 aa22.18■■□□□ 1.14
CTSD-201ENST00000236671 UACAQ9BZF9 1416 aa22.18■■□□□ 1.14
CTSD-201ENST00000236671 RAPGEF6Q8TEU7 1601 aa22.16■■□□□ 1.14
CTSD-201ENST00000236671 LRRIQ1Q96JM4 1722 aa22.16■■□□□ 1.14
CTSD-201ENST00000236671 MYT1Q01538 1121 aa22.15■■□□□ 1.14
CTSD-201ENST00000236671 ABCC2Q92887 1545 aa22.14■■□□□ 1.14
CTSD-201ENST00000236671 CCDC18Q5T9S5 1454 aa22.14■■□□□ 1.13
CTSD-201ENST00000236671 PPP1R15AO75807 674 aaPredicted RBP22.13■■□□□ 1.13
CTSD-201ENST00000236671 DDX10Q13206 875 aaKnown RBP22.13■■□□□ 1.13
CTSD-201ENST00000236671 HFM1A2PYH4 1435 aa22.13■■□□□ 1.13
CTSD-201ENST00000236671 MTUS2Q5JR59 1369 aa22.13■■□□□ 1.13
CTSD-201ENST00000236671 PTPRKQ15262 1439 aa22.12■■□□□ 1.13
CTSD-201ENST00000236671 NUP153P49790 1475 aaKnown RBP22.12■■□□□ 1.13
CTSD-201ENST00000236671 PTPN23Q9H3S7 1636 aa22.11■■□□□ 1.13
CTSD-201ENST00000236671 CDK13Q14004 1512 aaKnown RBP22.1■■□□□ 1.13
CTSD-201ENST00000236671 NCOA2Q15596 1464 aa22.09■■□□□ 1.13
CTSD-201ENST00000236671 ZCCHC11Q5TAX3 1644 aaKnown RBP22.09■■□□□ 1.13
CTSD-201ENST00000236671 MYOM3Q5VTT5 1437 aa22.07■■□□□ 1.12
CTSD-201ENST00000236671 EHBP1L1Q8N3D4 1523 aa22.06■■□□□ 1.12
CTSD-201ENST00000236671 SUPT6HQ7KZ85 1726 aaKnown RBP22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms