RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 FBLN2P98095 1184 aa35.71■■■■□ 3.31
CDX1-201ENST00000231656 CLIP1P30622 1438 aa35.71■■■■□ 3.31
CDX1-201ENST00000231656 RANGAP1P46060 587 aaPredicted RBP35.69■■■■□ 3.3
CDX1-201ENST00000231656 CHD1O14646 1710 aa35.62■■■■□ 3.29
CDX1-201ENST00000231656 TRIM26Q12899 539 aaPredicted RBP35.6■■■■□ 3.29
CDX1-201ENST00000231656 CEP170Q5SW79 1584 aa35.58■■■■□ 3.29
CDX1-201ENST00000231656 NUP160Q12769 1436 aa35.55■■■■□ 3.28
CDX1-201ENST00000231656 IQGAP2Q13576 1575 aa35.55■■■■□ 3.28
CDX1-201ENST00000231656 KIAA0586Q9BVV6 1533 aa35.53■■■■□ 3.28
CDX1-201ENST00000231656 ARHGAP35Q9NRY4 1499 aa35.52■■■■□ 3.28
CDX1-201ENST00000231656 ARAP1Q96P48 1450 aa35.43■■■■□ 3.26
CDX1-201ENST00000231656 EFCAB5A4FU69 1503 aa35.43■■■■□ 3.26
CDX1-201ENST00000231656 SAMD9Q5K651 1589 aa35.38■■■■□ 3.25
CDX1-201ENST00000231656 UGGT2Q9NYU1 1516 aa35.37■■■■□ 3.25
CDX1-201ENST00000231656 VPS8Q8N3P4 1428 aa35.33■■■■□ 3.25
CDX1-201ENST00000231656 P3H3Q8IVL6 736 aa35.32■■■■□ 3.24
CDX1-201ENST00000231656 FHOD3Q2V2M9 1422 aa35.28■■■■□ 3.24
CDX1-201ENST00000231656 JPH4Q96JJ6 628 aa35.25■■■■□ 3.23
CDX1-201ENST00000231656 DISP1Q96F81 1524 aa35.22■■■■□ 3.23
CDX1-201ENST00000231656 CLASP1Q7Z460 1538 aa35.2■■■■□ 3.23
CDX1-201ENST00000231656 KIAA0556O60303 1618 aa35.19■■■■□ 3.22
CDX1-201ENST00000231656 PPARGC1BQ86YN6 1023 aaKnown RBP35.16■■■■□ 3.22
CDX1-201ENST00000231656 HRCP23327 699 aa35.15■■■■□ 3.22
CDX1-201ENST00000231656 SHROOM2Q13796 1616 aa35.14■■■■□ 3.22
CDX1-201ENST00000231656 FMN1Q68DA7 1419 aa35.1■■■■□ 3.21
CDX1-201ENST00000231656 CARMIL2Q6F5E8 1435 aa35.1■■■■□ 3.21
CDX1-201ENST00000231656 PRG4Q92954 1404 aaPredicted RBP35.07■■■■□ 3.2
CDX1-201ENST00000231656 OSCARQ8IYS5 282 aa35.06■■■■□ 3.2
CDX1-201ENST00000231656 PCF11O94913 1555 aaKnown RBP35.02■■■■□ 3.2
CDX1-201ENST00000231656 CASKIN1Q8WXD9 1431 aa34.98■■■■□ 3.19
CDX1-201ENST00000231656 FYCO1Q9BQS8 1478 aa34.96■■■■□ 3.19
CDX1-201ENST00000231656 APLP2Q06481 763 aa34.93■■■■□ 3.18
CDX1-201ENST00000231656 TTBK1Q5TCY1 1321 aaPredicted RBP34.91■■■■□ 3.18
CDX1-201ENST00000231656 ERCC6L2Q5T890 1561 aa34.91■■■■□ 3.18
CDX1-201ENST00000231656 ATP1B4Q9UN42 357 aaPredicted RBP34.87■■■■□ 3.17
CDX1-201ENST00000231656 PTPRGP23470 1445 aa34.8■■■■□ 3.16
CDX1-201ENST00000231656 MAP3K1Q13233 1512 aa34.8■■■■□ 3.16
CDX1-201ENST00000231656 LRRIQ1Q96JM4 1722 aa34.8■■■■□ 3.16
CDX1-201ENST00000231656 HECW1Q76N89 1606 aa34.79■■■■□ 3.16
CDX1-201ENST00000231656 RAPGEF6Q8TEU7 1601 aa34.79■■■■□ 3.16
CDX1-201ENST00000231656 TIAM1Q13009 1591 aa34.79■■■■□ 3.16
CDX1-201ENST00000231656 PLB1Q6P1J6 1458 aa34.76■■■■□ 3.16
CDX1-201ENST00000231656 CFAP43Q8NDM7 1665 aa34.76■■■■□ 3.16
CDX1-201ENST00000231656 KANK4Q5T7N3 995 aaPredicted RBP34.72■■■■□ 3.15
CDX1-201ENST00000231656 ABCA8O94911 1581 aa34.71■■■■□ 3.15
CDX1-201ENST00000231656 NUP153P49790 1475 aaKnown RBP34.69■■■■□ 3.14
CDX1-201ENST00000231656 CCDC18Q5T9S5 1454 aa34.68■■■■□ 3.14
CDX1-201ENST00000231656 EPRSP07814 1512 aaKnown RBP34.68■■■■□ 3.14
CDX1-201ENST00000231656 LRRC9Q6ZRR7 1453 aa34.63■■■■□ 3.13
CDX1-201ENST00000231656 CDK13Q14004 1512 aaKnown RBP34.61■■■■□ 3.13
CDX1-201ENST00000231656 ARID3CA6NKF2 412 aa34.59■■■■□ 3.13
CDX1-201ENST00000231656 UACAQ9BZF9 1416 aa34.59■■■■□ 3.13
CDX1-201ENST00000231656 ABCC2Q92887 1545 aa34.51■■■■□ 3.11
CDX1-201ENST00000231656 ARHGEF11O15085 1522 aa34.5■■■■□ 3.11
CDX1-201ENST00000231656 MTUS2Q5JR59 1369 aa34.49■■■■□ 3.11
CDX1-201ENST00000231656 MAGI3Q5TCQ9 1506 aa34.48■■■■□ 3.11
CDX1-201ENST00000231656 ATP10BO94823 1461 aa34.47■■■■□ 3.11
CDX1-201ENST00000231656 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.46■■■■□ 3.11
CDX1-201ENST00000231656 HNRNPUL2Q1KMD3 747 aaKnown RBP34.46■■■■□ 3.11
CDX1-201ENST00000231656 UHRF1BP1LA0JNW5 1464 aa34.45■■■■□ 3.11
CDX1-201ENST00000231656 EHBP1L1Q8N3D4 1523 aa34.44■■■■□ 3.1
CDX1-201ENST00000231656 ZEB1P37275 1124 aaPredicted RBP34.39■■■■□ 3.1
CDX1-201ENST00000231656 CDK11AQ9UQ88 783 aaPredicted RBP34.39■■■■□ 3.1
CDX1-201ENST00000231656 RIMBP3CA6NJZ7 1639 aa34.37■■■■□ 3.09
CDX1-201ENST00000231656 RIMBP3BA6NNM3 1639 aa34.37■■■■□ 3.09
CDX1-201ENST00000231656 ADCY10Q96PN6 1610 aa34.37■■■■□ 3.09
CDX1-201ENST00000231656 RIMBP3Q9UFD9 1639 aa34.37■■■■□ 3.09
CDX1-201ENST00000231656 SUPT6HQ7KZ85 1726 aaKnown RBP34.35■■■■□ 3.09
CDX1-201ENST00000231656 KDM5BQ9UGL1 1544 aa34.32■■■■□ 3.08
CDX1-201ENST00000231656 ZCCHC11Q5TAX3 1644 aaKnown RBP34.29■■■■□ 3.08
CDX1-201ENST00000231656 TROQ12816 1431 aaPredicted RBP34.29■■■■□ 3.08
CDX1-201ENST00000231656 NCOA2Q15596 1464 aa34.29■■■■□ 3.08
CDX1-201ENST00000231656 PHLDB1Q86UU1 1377 aa34.28■■■■□ 3.08
CDX1-201ENST00000231656 PLEKHD1A6NEE1 506 aa34.27■■■■□ 3.08
CDX1-201ENST00000231656 RRBP1Q9P2E9 1410 aaKnown RBP34.2■■■■□ 3.07
CDX1-201ENST00000231656 KIF14Q15058 1648 aa34.17■■■■□ 3.06
CDX1-201ENST00000231656 CYB5RLQ6IPT4 315 aa34.17■■■■□ 3.06
CDX1-201ENST00000231656 MYOM3Q5VTT5 1437 aa34.12■■■■□ 3.05
CDX1-201ENST00000231656 CCNB3Q8WWL7 1395 aa34.12■■■■□ 3.05
CDX1-201ENST00000231656 CCER1Q8TC90 406 aaPredicted RBP34.1■■■■□ 3.05
CDX1-201ENST00000231656 FGD6Q6ZV73 1430 aa34.08■■■■□ 3.05
CDX1-201ENST00000231656 NPM1P06748 294 aaKnown RBP eCLIP34.07■■■■□ 3.04
CDX1-201ENST00000231656 ABCC10Q5T3U5 1492 aa34.04■■■■□ 3.04
CDX1-201ENST00000231656 WDR7Q9Y4E6 1490 aa34■■■■□ 3.03
CDX1-201ENST00000231656 ASXL2Q76L83 1435 aa33.99■■■■□ 3.03
CDX1-201ENST00000231656 KCNH8Q96L42 1107 aa33.98■■■■□ 3.03
CDX1-201ENST00000231656 ITSN2Q9NZM3 1697 aa33.97■■■■□ 3.03
CDX1-201ENST00000231656 GPATCH8Q9UKJ3 1502 aaKnown RBP33.97■■■■□ 3.03
CDX1-201ENST00000231656 MIA2Q96PC5 1412 aa33.97■■■■□ 3.03
CDX1-201ENST00000231656 FAM50AQ14320 339 aaKnown RBP33.95■■■■□ 3.03
CDX1-201ENST00000231656 CDC42BPAQ5VT25 1732 aa33.95■■■■□ 3.03
CDX1-201ENST00000231656 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.95■■■■□ 3.03
CDX1-201ENST00000231656 PTPN23Q9H3S7 1636 aa33.95■■■■□ 3.02
CDX1-201ENST00000231656 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.94■■■■□ 3.02
CDX1-201ENST00000231656 TTC37Q6PGP7 1564 aa33.92■■■■□ 3.02
CDX1-201ENST00000231656 TCOF1Q13428 1488 aaKnown RBP33.88■■■■□ 3.01
CDX1-201ENST00000231656 CFDP1Q9UEE9 299 aaPredicted RBP33.86■■■■□ 3.01
CDX1-201ENST00000231656 MAPKBP1O60336 1514 aa33.85■■■■□ 3.01
CDX1-201ENST00000231656 PREX2Q70Z35 1606 aa33.84■■■■□ 3.01
CDX1-201ENST00000231656 MYO5CQ9NQX4 1742 aa33.83■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms