RNA–Protein interactions for RNA: ENST00000229330.8

HCFC2-201, Transcript of host cell factor C2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HCFC2, Length 5,734 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC2-201ENST00000229330 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.41■□□□□ 0.54
HCFC2-201ENST00000229330 CEP162Q5TB80 1403 aa18.4■□□□□ 0.54
HCFC2-201ENST00000229330 CECR2Q9BXF3 1484 aa18.39■□□□□ 0.54
HCFC2-201ENST00000229330 CLIP1P30622 1438 aa18.38■□□□□ 0.53
HCFC2-201ENST00000229330 WRNQ14191 1432 aaPredicted RBP eCLIP18.38■□□□□ 0.53
HCFC2-201ENST00000229330 BAZ1AQ9NRL2 1556 aaPredicted RBP18.38■□□□□ 0.53
HCFC2-201ENST00000229330 EEA1Q15075 1411 aa18.36■□□□□ 0.53
HCFC2-201ENST00000229330 LAS1LQ9Y4W2 734 aaKnown RBP18.35■□□□□ 0.53
HCFC2-201ENST00000229330 BECN1Q14457 450 aa18.32■□□□□ 0.52
HCFC2-201ENST00000229330 EIF4G2P78344 907 aaKnown RBP eCLIP18.32■□□□□ 0.52
HCFC2-201ENST00000229330 TRIM44Q96DX7 344 aaPredicted RBP18.32■□□□□ 0.52
HCFC2-201ENST00000229330 GOLGA3Q08378 1498 aa18.31■□□□□ 0.52
HCFC2-201ENST00000229330 CHMP7Q8WUX9 453 aaPredicted RBP18.28■□□□□ 0.52
HCFC2-201ENST00000229330 NAP1L5Q96NT1 182 aaPredicted RBP18.26■□□□□ 0.51
HCFC2-201ENST00000229330 B4GALNT3Q6L9W6 998 aa18.26■□□□□ 0.51
HCFC2-201ENST00000229330 MTUS2Q5JR59 1369 aa18.26■□□□□ 0.51
HCFC2-201ENST00000229330 CHIC2Q9UKJ5 165 aa18.26■□□□□ 0.51
HCFC2-201ENST00000229330 TNIKQ9UKE5 1360 aa18.23■□□□□ 0.51
HCFC2-201ENST00000229330 KIF27Q86VH2 1401 aa18.21■□□□□ 0.51
HCFC2-201ENST00000229330 WDR43Q15061 677 aaKnown RBP eCLIP18.2■□□□□ 0.5
HCFC2-201ENST00000229330 CCER2I3L3R5 266 aa18.2■□□□□ 0.5
HCFC2-201ENST00000229330 NPM1P06748 294 aaKnown RBP eCLIP18.19■□□□□ 0.5
HCFC2-201ENST00000229330 TNNT2P45379 298 aaPredicted RBP18.17■□□□□ 0.5
HCFC2-201ENST00000229330 MROH2BQ7Z745 1585 aa18.16■□□□□ 0.5
HCFC2-201ENST00000229330 CEP164Q9UPV0 1460 aa18.16■□□□□ 0.5
HCFC2-201ENST00000229330 TSPY4P0CV99 314 aa18.11■□□□□ 0.49
HCFC2-201ENST00000229330 TSPY10P0CW01 314 aa18.11■□□□□ 0.49
HCFC2-201ENST00000229330 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.1■□□□□ 0.49
HCFC2-201ENST00000229330 GOLGA6L22H0YM25 854 aa18.1■□□□□ 0.49
HCFC2-201ENST00000229330 SIN3AQ96ST3 1273 aa18.09■□□□□ 0.49
HCFC2-201ENST00000229330 SENP3-EIF4A1A0A087X0R7 540 aa18.08■□□□□ 0.49
HCFC2-201ENST00000229330 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.08■□□□□ 0.49
HCFC2-201ENST00000229330 CHGAP10645 457 aaKnown RBP18.08■□□□□ 0.48
HCFC2-201ENST00000229330 CCDC88BA6NC98 1476 aa18.05■□□□□ 0.48
HCFC2-201ENST00000229330 ESF1Q9H501 851 aaKnown RBP18.05■□□□□ 0.48
HCFC2-201ENST00000229330 L1TD1Q5T7N2 865 aaKnown RBP18.04■□□□□ 0.48
HCFC2-201ENST00000229330 SOGA1O94964 1423 aa18.03■□□□□ 0.48
HCFC2-201ENST00000229330 RRP7BPQ9NSQ0 103 aa18.03■□□□□ 0.48
HCFC2-201ENST00000229330 SLC24A1O60721 1099 aa18.02■□□□□ 0.48
HCFC2-201ENST00000229330 KDM2AQ9Y2K7 1162 aa18.02■□□□□ 0.48
HCFC2-201ENST00000229330 TIMELESSQ9UNS1 1208 aa18■□□□□ 0.47
HCFC2-201ENST00000229330 RGS3P49796 1198 aa17.99■□□□□ 0.47
HCFC2-201ENST00000229330 IPO9Q96P70 1041 aaKnown RBP17.99■□□□□ 0.47
HCFC2-201ENST00000229330 PLEKHD1A6NEE1 506 aa17.99■□□□□ 0.47
HCFC2-201ENST00000229330 NCLP19338 710 aaKnown RBP17.99■□□□□ 0.47
HCFC2-201ENST00000229330 STAG3Q9UJ98 1225 aa17.99■□□□□ 0.47
HCFC2-201ENST00000229330 PTMAP06454 111 aaKnown RBP17.98■□□□□ 0.47
HCFC2-201ENST00000229330 DNTTIP2Q5QJE6 756 aaKnown RBP17.96■□□□□ 0.47
HCFC2-201ENST00000229330 SMARCA2P51531 1590 aa17.96■□□□□ 0.47
HCFC2-201ENST00000229330 ERCC6Q03468 1493 aa17.96■□□□□ 0.47
HCFC2-201ENST00000229330 KCNH8Q96L42 1107 aa17.95■□□□□ 0.46
HCFC2-201ENST00000229330 CUX2O14529 1486 aa17.95■□□□□ 0.46
HCFC2-201ENST00000229330 ABCC8Q09428 1581 aa17.94■□□□□ 0.46
HCFC2-201ENST00000229330 CARMIL1Q5VZK9 1371 aa17.93■□□□□ 0.46
HCFC2-201ENST00000229330 CCNB3Q8WWL7 1395 aa17.92■□□□□ 0.46
HCFC2-201ENST00000229330 MYH16Q9H6N6 1097 aa17.92■□□□□ 0.46
HCFC2-201ENST00000229330 FANCIQ9NVI1 1328 aa17.92■□□□□ 0.46
HCFC2-201ENST00000229330 WIZO95785 1651 aa17.91■□□□□ 0.46
HCFC2-201ENST00000229330 TCERG1O14776 1098 aaKnown RBP17.9■□□□□ 0.46
HCFC2-201ENST00000229330 CFDP1Q9UEE9 299 aaPredicted RBP17.89■□□□□ 0.45
HCFC2-201ENST00000229330 PNNQ9H307 717 aaKnown RBP17.88■□□□□ 0.45
HCFC2-201ENST00000229330 TOP2AP11388 1531 aaKnown RBP17.87■□□□□ 0.45
HCFC2-201ENST00000229330 PLPPR3Q6T4P5 718 aa17.87■□□□□ 0.45
HCFC2-201ENST00000229330 USP35Q9P2H5 1018 aa17.85■□□□□ 0.45
HCFC2-201ENST00000229330 MSNP26038 577 aaKnown RBP17.83■□□□□ 0.45
HCFC2-201ENST00000229330 FHAD1B1AJZ9 1412 aa17.83■□□□□ 0.45
HCFC2-201ENST00000229330 CDK11BP21127 795 aaKnown RBP17.82■□□□□ 0.44
HCFC2-201ENST00000229330 RSPH6AQ9H0K4 717 aa17.82■□□□□ 0.44
HCFC2-201ENST00000229330 CARD11Q9BXL7 1154 aa17.81■□□□□ 0.44
HCFC2-201ENST00000229330 ARID4BQ4LE39 1312 aaPredicted RBP17.81■□□□□ 0.44
HCFC2-201ENST00000229330 HSP90AB1P08238 724 aaKnown RBP17.8■□□□□ 0.44
HCFC2-201ENST00000229330 SETD5Q9C0A6 1442 aa17.8■□□□□ 0.44
HCFC2-201ENST00000229330 VPS8Q8N3P4 1428 aa17.79■□□□□ 0.44
HCFC2-201ENST00000229330 HSPA5P11021 654 aaKnown RBP17.79■□□□□ 0.44
HCFC2-201ENST00000229330 EIF4G1Q04637 1599 aaKnown RBP17.79■□□□□ 0.44
HCFC2-201ENST00000229330 FTSJ3Q8IY81 847 aaKnown RBP17.78■□□□□ 0.44
HCFC2-201ENST00000229330 KNSTRNQ9Y448 316 aa17.78■□□□□ 0.44
HCFC2-201ENST00000229330 HSCBQ8IWL3 235 aa17.77■□□□□ 0.44
HCFC2-201ENST00000229330 PDS5BQ9NTI5 1447 aa17.75■□□□□ 0.43
HCFC2-201ENST00000229330 RGL3Q3MIN7 710 aa17.74■□□□□ 0.43
HCFC2-201ENST00000229330 RCAN3Q9UKA8 241 aa17.74■□□□□ 0.43
HCFC2-201ENST00000229330 FRAT1Q92837 279 aaPredicted RBP17.74■□□□□ 0.43
HCFC2-201ENST00000229330 NUDCQ9Y266 331 aa17.74■□□□□ 0.43
HCFC2-201ENST00000229330 ATAD2BQ9ULI0 1458 aa17.73■□□□□ 0.43
HCFC2-201ENST00000229330 CASC1Q6TDU7 716 aa17.72■□□□□ 0.43
HCFC2-201ENST00000229330 SPRYD3Q8NCJ5 442 aa17.72■□□□□ 0.43
HCFC2-201ENST00000229330 GOLGA6L3A6NEY3 463 aa17.72■□□□□ 0.43
HCFC2-201ENST00000229330 SMARCA4P51532 1647 aa17.72■□□□□ 0.43
HCFC2-201ENST00000229330 HSP90AA2PQ14568 343 aaPredicted RBP17.71■□□□□ 0.43
HCFC2-201ENST00000229330 GSE1Q14687 1217 aa17.71■□□□□ 0.43
HCFC2-201ENST00000229330 CDCA8Q53HL2 280 aa17.7■□□□□ 0.42
HCFC2-201ENST00000229330 GZF1Q9H116 711 aaPredicted RBP17.7■□□□□ 0.42
HCFC2-201ENST00000229330 TDRD9Q8NDG6 1382 aaKnown RBP17.7■□□□□ 0.42
HCFC2-201ENST00000229330 SLKQ9H2G2 1235 aaPredicted RBP17.7■□□□□ 0.42
HCFC2-201ENST00000229330 RAB3GAP2Q9H2M9 1393 aa17.7■□□□□ 0.42
HCFC2-201ENST00000229330 PPP1R15AO75807 674 aaPredicted RBP17.69■□□□□ 0.42
HCFC2-201ENST00000229330 CADPSQ9ULU8 1353 aa17.69■□□□□ 0.42
HCFC2-201ENST00000229330 PLCB2Q00722 1185 aa17.68■□□□□ 0.42
HCFC2-201ENST00000229330 CC2D1BQ5T0F9 858 aaKnown RBP17.68■□□□□ 0.42
HCFC2-201ENST00000229330 CHAF1AQ13111 956 aaPredicted RBP17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms