RNA–Protein interactions for RNA: ENSMUST00000093490.8

Clcn3-203, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 5,518 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-203ENSMUST00000093490 Arhgap27A2AB59 869 aa21.24■□□□□ 0.99
Clcn3-203ENSMUST00000093490 Upf2A2AT37 1269 aaKnown RBP21.23■□□□□ 0.99
Clcn3-203ENSMUST00000093490 Sycp2Q9CUU3 1500 aa21.22■□□□□ 0.99
Clcn3-203ENSMUST00000093490 Calr4Q3TQS0 420 aa21.22■□□□□ 0.99
Clcn3-203ENSMUST00000093490 Mapk8ip2Q9ERE9 830 aa21.19■□□□□ 0.98
Clcn3-203ENSMUST00000093490 Crybg2B7ZCC2 1516 aa21.16■□□□□ 0.98
Clcn3-203ENSMUST00000093490 Gm38655A0A286YDK6 273 aa21.15■□□□□ 0.98
Clcn3-203ENSMUST00000093490 Prdm10Q3UTQ7 1184 aa21.13■□□□□ 0.97
Clcn3-203ENSMUST00000093490 Ppp4r2Q0VGB7 417 aa21.09■□□□□ 0.97
Clcn3-203ENSMUST00000093490 Fmn1Q05860 1466 aa21.06■□□□□ 0.96
Clcn3-203ENSMUST00000093490 Polr3glQ8R0C0 218 aa21.05■□□□□ 0.96
Clcn3-203ENSMUST00000093490 Ccdc9Q8VC31 543 aaKnown RBP21.05■□□□□ 0.96
Clcn3-203ENSMUST00000093490 Wdr43Q6ZQL4 677 aaKnown RBP21.03■□□□□ 0.96
Clcn3-203ENSMUST00000093490 Mtus2Q3UHD3 1353 aa21.01■□□□□ 0.95
Clcn3-203ENSMUST00000093490 IqubQ8CDK3 788 aa20.99■□□□□ 0.95
Clcn3-203ENSMUST00000093490 P3h3Q8CG70 732 aa20.99■□□□□ 0.95
Clcn3-203ENSMUST00000093490 Phldb1Q6PDH0 1371 aaKnown RBP20.95■□□□□ 0.94
Clcn3-203ENSMUST00000093490 Mia2Q91ZV0 1396 aa20.93■□□□□ 0.94
Clcn3-203ENSMUST00000093490 Atad2bE9Q166 1460 aaKnown RBP20.92■□□□□ 0.94
Clcn3-203ENSMUST00000093490 Hsp90aa1P07901 733 aaKnown RBP20.91■□□□□ 0.94
Clcn3-203ENSMUST00000093490 Mrs2Q5NCE8 434 aa20.89■□□□□ 0.93
Clcn3-203ENSMUST00000093490 Srpk2O54781 681 aaKnown RBP20.88■□□□□ 0.93
Clcn3-203ENSMUST00000093490 ArxO35085 564 aa20.88■□□□□ 0.93
Clcn3-203ENSMUST00000093490 Rgl3Q3UYI5 709 aa20.88■□□□□ 0.93
Clcn3-203ENSMUST00000093490 Rrp7aQ9D1C9 280 aaKnown RBP20.87■□□□□ 0.93
Clcn3-203ENSMUST00000093490 Kif27Q7M6Z4 1394 aa20.85■□□□□ 0.93
Clcn3-203ENSMUST00000093490 Mroh3A0A1D5RM54 893 aa20.84■□□□□ 0.93
Clcn3-203ENSMUST00000093490 Cux2P70298 1426 aa20.82■□□□□ 0.92
Clcn3-203ENSMUST00000093490 Zfp777B9EKF4 885 aa20.82■□□□□ 0.92
Clcn3-203ENSMUST00000093490 Cwc22Q8C5N3 908 aaKnown RBP20.79■□□□□ 0.92
Clcn3-203ENSMUST00000093490 CftrP26361 1476 aa20.79■□□□□ 0.92
Clcn3-203ENSMUST00000093490 Ppp1r18Q8BQ30 594 aa20.78■□□□□ 0.92
Clcn3-203ENSMUST00000093490 Rad21Q61550 635 aaKnown RBP20.76■□□□□ 0.91
Clcn3-203ENSMUST00000093490 AknaQ80VW7 1404 aa20.76■□□□□ 0.91
Clcn3-203ENSMUST00000093490 Gm20521D3Z5F7 333 aa20.76■□□□□ 0.91
Clcn3-203ENSMUST00000093490 Dhx57Q6P5D3 1388 aaKnown RBP20.75■□□□□ 0.91
Clcn3-203ENSMUST00000093490 Smarca4Q3TKT4 1613 aaKnown RBP20.73■□□□□ 0.91
Clcn3-203ENSMUST00000093490 Cep162Q6ZQ06 1403 aa20.72■□□□□ 0.91
Clcn3-203ENSMUST00000093490 1700123L14RikQ3V2K7 440 aa20.71■□□□□ 0.91
Clcn3-203ENSMUST00000093490 Exosc9Q9JHI7 438 aaKnown RBP20.7■□□□□ 0.9
Clcn3-203ENSMUST00000093490 Kdm2aP59997 1161 aa20.7■□□□□ 0.9
Clcn3-203ENSMUST00000093490 Card11Q8CIS0 1159 aa20.7■□□□□ 0.9
Clcn3-203ENSMUST00000093490 MyclP10166 368 aa20.68■□□□□ 0.9
Clcn3-203ENSMUST00000093490 Rpap1Q80TE0 1409 aa20.68■□□□□ 0.9
Clcn3-203ENSMUST00000093490 Rsph4aQ8BYM7 716 aa20.67■□□□□ 0.9
Clcn3-203ENSMUST00000093490 Smarca2Q6DIC0 1577 aa20.66■□□□□ 0.9
Clcn3-203ENSMUST00000093490 Baz1bQ9Z277 1479 aa20.66■□□□□ 0.9
Clcn3-203ENSMUST00000093490 Aebp2Q9Z248 504 aaKnown RBP20.65■□□□□ 0.9
Clcn3-203ENSMUST00000093490 Aebp1Q640N1 1128 aa20.65■□□□□ 0.9
Clcn3-203ENSMUST00000093490 Fgd1P52734 960 aa20.65■□□□□ 0.9
Clcn3-203ENSMUST00000093490 Fyco1Q8VDC1 1437 aa20.65■□□□□ 0.9
Clcn3-203ENSMUST00000093490 CntlnA2AM05 1397 aa20.64■□□□□ 0.89
Clcn3-203ENSMUST00000093490 Lemd3Q9WU40 921 aa20.63■□□□□ 0.89
Clcn3-203ENSMUST00000093490 Fam71e1A1L3C1 212 aa20.62■□□□□ 0.89
Clcn3-203ENSMUST00000093490 Grwd1Q810D6 446 aaKnown RBP20.61■□□□□ 0.89
Clcn3-203ENSMUST00000093490 Ccdc88bQ4QRL3 1481 aa20.61■□□□□ 0.89
Clcn3-203ENSMUST00000093490 Stk24Q99KH8 431 aa20.61■□□□□ 0.89
Clcn3-203ENSMUST00000093490 Carmil1Q6EDY6 1374 aa20.6■□□□□ 0.89
Clcn3-203ENSMUST00000093490 CanxP35564 591 aaKnown RBP20.59■□□□□ 0.89
Clcn3-203ENSMUST00000093490 Stag3O70576 1240 aa20.59■□□□□ 0.89
Clcn3-203ENSMUST00000093490 ScribQ80U72 1612 aa20.59■□□□□ 0.89
Clcn3-203ENSMUST00000093490 Hsp90ab1P11499 724 aaKnown RBP20.59■□□□□ 0.89
Clcn3-203ENSMUST00000093490 Ofd1Q80Z25 1017 aa20.58■□□□□ 0.89
Clcn3-203ENSMUST00000093490 DekQ7TNV0 380 aaKnown RBP20.56■□□□□ 0.88
Clcn3-203ENSMUST00000093490 Trim44Q9QXA7 346 aa20.56■□□□□ 0.88
Clcn3-203ENSMUST00000093490 Cttnbp2B9EJA2 1648 aa20.56■□□□□ 0.88
Clcn3-203ENSMUST00000093490 Map4P27546 1125 aaKnown RBP20.55■□□□□ 0.88
Clcn3-203ENSMUST00000093490 Ccdc27Q3V036 639 aa20.55■□□□□ 0.88
Clcn3-203ENSMUST00000093490 Iqcf3Q9D498 203 aa20.55■□□□□ 0.88
Clcn3-203ENSMUST00000093490 Cecr2E9Q2Z1 1453 aa20.53■□□□□ 0.88
Clcn3-203ENSMUST00000093490 CatipB9EKE5 520 aa20.53■□□□□ 0.88
Clcn3-203ENSMUST00000093490 LrpprcQ6PB66 1392 aaKnown RBP20.52■□□□□ 0.87
Clcn3-203ENSMUST00000093490 Mapk8ip3Q9ESN9 1337 aa20.52■□□□□ 0.87
Clcn3-203ENSMUST00000093490 Synj1Q8CHC4 1574 aa20.52■□□□□ 0.87
Clcn3-203ENSMUST00000093490 Arid3cA6PWV5 409 aa20.51■□□□□ 0.87
Clcn3-203ENSMUST00000093490 Htatsf1Q8BGC0 757 aa20.49■□□□□ 0.87
Clcn3-203ENSMUST00000093490 Rangap1P46061 589 aaKnown RBP20.49■□□□□ 0.87
Clcn3-203ENSMUST00000093490 Arhgap35Q91YM2 1499 aa20.48■□□□□ 0.87
Clcn3-203ENSMUST00000093490 Trim30dE9PWL0 497 aa20.48■□□□□ 0.87
Clcn3-203ENSMUST00000093490 Chmp4bQ9D8B3 224 aaKnown RBP20.46■□□□□ 0.87
Clcn3-203ENSMUST00000093490 Arid4bA2CG63 1314 aaKnown RBP20.45■□□□□ 0.86
Clcn3-203ENSMUST00000093490 Ppm1gQ61074 542 aa20.43■□□□□ 0.86
Clcn3-203ENSMUST00000093490 Iqgap2Q3UQ44 1575 aa20.41■□□□□ 0.86
Clcn3-203ENSMUST00000093490 Ythdc1E9Q5K9 736 aaKnown RBP20.41■□□□□ 0.86
Clcn3-203ENSMUST00000093490 NudcO35685 332 aaKnown RBP20.4■□□□□ 0.86
Clcn3-203ENSMUST00000093490 Dhx29Q6PGC1 1365 aaKnown RBP20.4■□□□□ 0.86
Clcn3-203ENSMUST00000093490 Fhad1A6PWD2 1420 aa20.39■□□□□ 0.85
Clcn3-203ENSMUST00000093490 Pkd2O35245 966 aa20.38■□□□□ 0.85
Clcn3-203ENSMUST00000093490 Plekhh2Q8C115 1491 aa20.37■□□□□ 0.85
Clcn3-203ENSMUST00000093490 NgefQ8CHT1 710 aa20.36■□□□□ 0.85
Clcn3-203ENSMUST00000093490 Pabpn1Q8CCS6 302 aaKnown RBP20.36■□□□□ 0.85
Clcn3-203ENSMUST00000093490 Mbd3Q9Z2D8 285 aaKnown RBP20.35■□□□□ 0.85
Clcn3-203ENSMUST00000093490 Trim26Q99PN3 545 aa20.34■□□□□ 0.85
Clcn3-203ENSMUST00000093490 PtmaP26350 111 aa20.33■□□□□ 0.85
Clcn3-203ENSMUST00000093490 Vsig10D3YX43 558 aa20.33■□□□□ 0.84
Clcn3-203ENSMUST00000093490 Gtf2e1Q9D0D5 440 aa20.33■□□□□ 0.84
Clcn3-203ENSMUST00000093490 Cabp1Q9JLK7 227 aa20.3■□□□□ 0.84
Clcn3-203ENSMUST00000093490 Psme1P97371 249 aa20.29■□□□□ 0.84
Clcn3-203ENSMUST00000093490 Nup155Q99P88 1391 aaKnown RBP20.29■□□□□ 0.84
Clcn3-203ENSMUST00000093490 Ncoa2Q61026 1462 aa20.28■□□□□ 0.84
Retrieved 100 of 22,080 RNA–protein pairs in 22.8 ms