RNA–Protein interactions for RNA: ENSMUST00000005503.3

Msh6-201, Transcript of DNA mismatch repair protein Msh6, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Msh6, Length 4,254 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6-201ENSMUST00000005503 Crybg2B7ZCC2 1516 aa17.21■□□□□ 0.35
Msh6-201ENSMUST00000005503 Prdm10Q3UTQ7 1184 aa17.21■□□□□ 0.34
Msh6-201ENSMUST00000005503 Rad21Q61550 635 aaKnown RBP17.21■□□□□ 0.34
Msh6-201ENSMUST00000005503 Sin3aQ60520 1274 aaKnown RBP17.2■□□□□ 0.34
Msh6-201ENSMUST00000005503 ArxO35085 564 aa17.19■□□□□ 0.34
Msh6-201ENSMUST00000005503 Smarca2Q6DIC0 1577 aa17.19■□□□□ 0.34
Msh6-201ENSMUST00000005503 Slc4a3P16283 1227 aa17.14■□□□□ 0.33
Msh6-201ENSMUST00000005503 Fkbp15Q6P9Q6 1216 aaKnown RBP17.14■□□□□ 0.33
Msh6-201ENSMUST00000005503 Wwc2Q6NXJ0 1187 aa17.13■□□□□ 0.33
Msh6-201ENSMUST00000005503 Rapgef2Q8CHG7 1496 aa17.11■□□□□ 0.33
Msh6-201ENSMUST00000005503 Kif15Q6P9L6 1387 aa17.11■□□□□ 0.33
Msh6-201ENSMUST00000005503 Rgl3Q3UYI5 709 aa17.1■□□□□ 0.33
Msh6-201ENSMUST00000005503 Ofd1Q80Z25 1017 aa17.09■□□□□ 0.33
Msh6-201ENSMUST00000005503 Ubl4bQ9CQ84 188 aa17.09■□□□□ 0.33
Msh6-201ENSMUST00000005503 CftrP26361 1476 aa17.08■□□□□ 0.32
Msh6-201ENSMUST00000005503 Gm13697A2AK42 830 aa17.07■□□□□ 0.32
Msh6-201ENSMUST00000005503 Erich6D3Z6S9 713 aa17.06■□□□□ 0.32
Msh6-201ENSMUST00000005503 Nolc1E9Q5C9 702 aaKnown RBP17.05■□□□□ 0.32
Msh6-201ENSMUST00000005503 Supt16hQ920B9 1047 aa17.05■□□□□ 0.32
Msh6-201ENSMUST00000005503 Synj1Q8CHC4 1574 aa17.04■□□□□ 0.32
Msh6-201ENSMUST00000005503 Fmn1Q05860 1466 aa17.04■□□□□ 0.32
Msh6-201ENSMUST00000005503 Polr3glQ8R0C0 218 aa17.02■□□□□ 0.32
Msh6-201ENSMUST00000005503 Sycp2Q9CUU3 1500 aa17.01■□□□□ 0.31
Msh6-201ENSMUST00000005503 Grwd1Q810D6 446 aaKnown RBP16.99■□□□□ 0.31
Msh6-201ENSMUST00000005503 Nlrp6Q91WS2 869 aa16.98■□□□□ 0.31
Msh6-201ENSMUST00000005503 Ifnlr1Q8CGK5 535 aa16.97■□□□□ 0.31
Msh6-201ENSMUST00000005503 Hsp90aa1P07901 733 aaKnown RBP16.95■□□□□ 0.3
Msh6-201ENSMUST00000005503 Baz1bQ9Z277 1479 aa16.94■□□□□ 0.3
Msh6-201ENSMUST00000005503 Exoc6Q8R313 802 aa16.92■□□□□ 0.3
Msh6-201ENSMUST00000005503 CanxP35564 591 aaKnown RBP16.92■□□□□ 0.3
Msh6-201ENSMUST00000005503 Rangap1P46061 589 aaKnown RBP16.92■□□□□ 0.3
Msh6-201ENSMUST00000005503 Ccdc27Q3V036 639 aa16.91■□□□□ 0.3
Msh6-201ENSMUST00000005503 Upf2A2AT37 1269 aaKnown RBP16.88■□□□□ 0.29
Msh6-201ENSMUST00000005503 Mia2Q91ZV0 1396 aa16.88■□□□□ 0.29
Msh6-201ENSMUST00000005503 Apbb1Q9QXJ1 710 aa16.87■□□□□ 0.29
Msh6-201ENSMUST00000005503 Znf710Q3U288 666 aa16.85■□□□□ 0.29
Msh6-201ENSMUST00000005503 Card11Q8CIS0 1159 aa16.85■□□□□ 0.29
Msh6-201ENSMUST00000005503 Dbr1Q923B1 550 aa16.83■□□□□ 0.28
Msh6-201ENSMUST00000005503 Pkd2O35245 966 aa16.82■□□□□ 0.28
Msh6-201ENSMUST00000005503 B4galnt3Q6L8S8 986 aa16.81■□□□□ 0.28
Msh6-201ENSMUST00000005503 Ccdc18Q640L5 1455 aa16.81■□□□□ 0.28
Msh6-201ENSMUST00000005503 Aebp1Q640N1 1128 aa16.8■□□□□ 0.28
Msh6-201ENSMUST00000005503 Trim30dE9PWL0 497 aa16.79■□□□□ 0.28
Msh6-201ENSMUST00000005503 Mphosph9A6H5Y1 991 aa16.76■□□□□ 0.27
Msh6-201ENSMUST00000005503 Tcerg1Q8CGF7 1100 aaKnown RBP16.75■□□□□ 0.27
Msh6-201ENSMUST00000005503 Trim26Q99PN3 545 aa16.75■□□□□ 0.27
Msh6-201ENSMUST00000005503 Cwc22Q8C5N3 908 aaKnown RBP16.74■□□□□ 0.27
Msh6-201ENSMUST00000005503 Cabp1Q9JLK7 227 aa16.74■□□□□ 0.27
Msh6-201ENSMUST00000005503 Ccdc9Q8VC31 543 aaKnown RBP16.74■□□□□ 0.27
Msh6-201ENSMUST00000005503 Smg6P61406 1418 aaKnown RBP16.73■□□□□ 0.27
Msh6-201ENSMUST00000005503 Rundc1Q0VDN7 615 aa16.72■□□□□ 0.27
Msh6-201ENSMUST00000005503 Neurod2Q62414 383 aa16.72■□□□□ 0.27
Msh6-201ENSMUST00000005503 Arhgap35Q91YM2 1499 aa16.71■□□□□ 0.27
Msh6-201ENSMUST00000005503 PrkcshO08795 521 aa16.7■□□□□ 0.26
Msh6-201ENSMUST00000005503 Kdm2aP59997 1161 aa16.7■□□□□ 0.26
Msh6-201ENSMUST00000005503 Fyco1Q8VDC1 1437 aa16.69■□□□□ 0.26
Msh6-201ENSMUST00000005503 Atp1b4Q99ME6 356 aa16.69■□□□□ 0.26
Msh6-201ENSMUST00000005503 Hsp90ab1P11499 724 aaKnown RBP16.69■□□□□ 0.26
Msh6-201ENSMUST00000005503 Gm13695A2AK44 830 aa16.67■□□□□ 0.26
Msh6-201ENSMUST00000005503 4930567H17RikQ3V0K5 233 aa16.67■□□□□ 0.26
Msh6-201ENSMUST00000005503 Ncapd3Q6ZQK0 1506 aa16.65■□□□□ 0.26
Msh6-201ENSMUST00000005503 Mtus2Q3UHD3 1353 aa16.65■□□□□ 0.26
Msh6-201ENSMUST00000005503 Irx3P81067 507 aa16.65■□□□□ 0.26
Msh6-201ENSMUST00000005503 CntlnA2AM05 1397 aa16.65■□□□□ 0.26
Msh6-201ENSMUST00000005503 ChgaP26339 463 aaKnown RBP16.65■□□□□ 0.26
Msh6-201ENSMUST00000005503 Arhgap27A2AB59 869 aa16.64■□□□□ 0.25
Msh6-201ENSMUST00000005503 Arid4bA2CG63 1314 aaKnown RBP16.64■□□□□ 0.25
Msh6-201ENSMUST00000005503 Trak1Q6PD31 939 aa16.63■□□□□ 0.25
Msh6-201ENSMUST00000005503 Vsig10D3YX43 558 aa16.63■□□□□ 0.25
Msh6-201ENSMUST00000005503 Spryd3E9Q9B3 442 aa16.62■□□□□ 0.25
Msh6-201ENSMUST00000005503 Ipo9Q91YE6 1041 aa16.62■□□□□ 0.25
Msh6-201ENSMUST00000005503 Kif27Q7M6Z4 1394 aa16.62■□□□□ 0.25
Msh6-201ENSMUST00000005503 Cc2d2aQ8CFW7 1633 aa16.62■□□□□ 0.25
Msh6-201ENSMUST00000005503 Pak3Q61036 559 aa16.62■□□□□ 0.25
Msh6-201ENSMUST00000005503 Clstn2Q9ER65 966 aa16.61■□□□□ 0.25
Msh6-201ENSMUST00000005503 Armcx1Q9CX83 456 aa16.6■□□□□ 0.25
Msh6-201ENSMUST00000005503 Cttnbp2B9EJA2 1648 aa16.59■□□□□ 0.25
Msh6-201ENSMUST00000005503 Mroh3A0A1D5RM54 893 aa16.57■□□□□ 0.24
Msh6-201ENSMUST00000005503 Rrp7aQ9D1C9 280 aaKnown RBP16.57■□□□□ 0.24
Msh6-201ENSMUST00000005503 Chmp5Q9D7S9 219 aa16.57■□□□□ 0.24
Msh6-201ENSMUST00000005503 Zscan21Q07231 555 aa16.56■□□□□ 0.24
Msh6-201ENSMUST00000005503 Ercc6F8VPZ5 1481 aa16.55■□□□□ 0.24
Msh6-201ENSMUST00000005503 Arap1Q4LDD4 1452 aa16.55■□□□□ 0.24
Msh6-201ENSMUST00000005503 DekQ7TNV0 380 aaKnown RBP16.54■□□□□ 0.24
Msh6-201ENSMUST00000005503 Ccnb3Q810T2 1396 aa16.54■□□□□ 0.24
Msh6-201ENSMUST00000005503 Top2aQ01320 1528 aaKnown RBP16.54■□□□□ 0.24
Msh6-201ENSMUST00000005503 Ppm1gQ61074 542 aa16.53■□□□□ 0.24
Msh6-201ENSMUST00000005503 Smarca4Q3TKT4 1613 aaKnown RBP16.52■□□□□ 0.24
Msh6-201ENSMUST00000005503 Usp47Q8BY87 1376 aa16.52■□□□□ 0.24
Msh6-201ENSMUST00000005503 Map4P27546 1125 aaKnown RBP16.52■□□□□ 0.24
Msh6-201ENSMUST00000005503 Mak16Q8BGS0 296 aaKnown RBP16.52■□□□□ 0.23
Msh6-201ENSMUST00000005503 Rpap1Q80TE0 1409 aa16.52■□□□□ 0.23
Msh6-201ENSMUST00000005503 Slc4a2P13808 1237 aaKnown RBP16.51■□□□□ 0.23
Msh6-201ENSMUST00000005503 Rwdd1Q9CQK7 243 aa16.5■□□□□ 0.23
Msh6-201ENSMUST00000005503 Carmil1Q6EDY6 1374 aa16.49■□□□□ 0.23
Msh6-201ENSMUST00000005503 Naip1Q9QWK5 1403 aa16.48■□□□□ 0.23
Msh6-201ENSMUST00000005503 Hdac5Q9Z2V6 1113 aa16.48■□□□□ 0.23
Msh6-201ENSMUST00000005503 Dnai1Q8C0M8 701 aa16.48■□□□□ 0.23
Msh6-201ENSMUST00000005503 Pds5bQ4VA53 1446 aaKnown RBP16.47■□□□□ 0.23
Msh6-201ENSMUST00000005503 CrbnQ8C7D2 445 aa16.47■□□□□ 0.23
Retrieved 100 of 22,080 RNA–protein pairs in 33.2 ms