RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 PEA15Q15121 130 aa7.13□□□□□ -1.27
CCDC88C-213ENST00000557455 RASL11AQ6T310 242 aa7.13□□□□□ -1.27
CCDC88C-213ENST00000557455 SMIM12Q96EX1 92 aa7.13□□□□□ -1.27
CCDC88C-213ENST00000557455 TRAV8-4A0A0B4J246 113 aa7.12□□□□□ -1.27
CCDC88C-213ENST00000557455 P01737 135 aa7.12□□□□□ -1.27
CCDC88C-213ENST00000557455 TRGC1P0CF51 173 aa7.12□□□□□ -1.27
CCDC88C-213ENST00000557455 C20orf203Q8NBC4 194 aa7.12□□□□□ -1.27
CCDC88C-213ENST00000557455 TMEM243Q9BU79 118 aa7.12□□□□□ -1.27
CCDC88C-213ENST00000557455 EIF5A2Q9GZV4 153 aaKnown RBP7.12□□□□□ -1.27
CCDC88C-213ENST00000557455 SMDT1Q9H4I9 107 aa7.12□□□□□ -1.27
CCDC88C-213ENST00000557455 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.12□□□□□ -1.27
CCDC88C-213ENST00000557455 IGLV4-60A0A075B6I1 120 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 A0A1B0GUV1 79 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 hDV102S1A0JD36 115 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 F8W036 122 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 PANO1I0J062 215 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 UBE2L6O14933 153 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 PDE6DO43924 150 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 IFNA1P01562 189 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 APOC3P02656 99 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 NTF3P20783 257 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 MEF2BQ02080 365 aaPredicted RBP7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 LYZL1Q6UWQ5 148 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 SDIM1Q6ZPB5 146 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 SVBPQ8N300 66 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 SEC11CQ9BY50 192 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 DPH3P1Q9H4G8 78 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 NIT2Q9NQR4 276 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 BIN3Q9NQY0 253 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 CARHSP1Q9Y2V2 147 aaKnown RBP7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 HMCN2Q8NDA2 5059 aa7.11□□□□□ -1.27
CCDC88C-213ENST00000557455 CNBPP62633 177 aaKnown RBP7.1□□□□□ -1.27
CCDC88C-213ENST00000557455 COTL1Q14019 142 aa7.1□□□□□ -1.27
CCDC88C-213ENST00000557455 PGLYRP4Q96LB8 373 aa7.1□□□□□ -1.27
CCDC88C-213ENST00000557455 AP5S1Q9NUS5 200 aa7.1□□□□□ -1.27
CCDC88C-213ENST00000557455 TRBV20OR9-2A0A075B6H5 130 aa7.09□□□□□ -1.27
CCDC88C-213ENST00000557455 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.09□□□□□ -1.27
CCDC88C-213ENST00000557455 SNAPINO95295 136 aa7.09□□□□□ -1.27
CCDC88C-213ENST00000557455 TAGLN2P37802 199 aaKnown RBP7.09□□□□□ -1.27
CCDC88C-213ENST00000557455 AMTP48728 403 aa7.09□□□□□ -1.27
CCDC88C-213ENST00000557455 HNRNPA3P51991 378 aaKnown RBP7.09□□□□□ -1.27
CCDC88C-213ENST00000557455 SRSF3P84103 164 aaKnown RBP7.09□□□□□ -1.27
CCDC88C-213ENST00000557455 C10orf91Q5T1B1 145 aa7.09□□□□□ -1.27
CCDC88C-213ENST00000557455 WDR73Q6P4I2 378 aa7.09□□□□□ -1.27
CCDC88C-213ENST00000557455 NUDT10Q8NFP7 164 aa7.09□□□□□ -1.27
CCDC88C-213ENST00000557455 DPH3Q96FX2 82 aa7.09□□□□□ -1.27
CCDC88C-213ENST00000557455 NUDT11Q96G61 164 aa7.09□□□□□ -1.27
CCDC88C-213ENST00000557455 GFRA4Q9GZZ7 299 aa7.09□□□□□ -1.27
CCDC88C-213ENST00000557455 IGHV3-64A0A075B6Q5 118 aa7.08□□□□□ -1.28
CCDC88C-213ENST00000557455 BCL2P10415 239 aa7.08□□□□□ -1.28
CCDC88C-213ENST00000557455 TWIST1Q15672 202 aa7.08□□□□□ -1.28
CCDC88C-213ENST00000557455 ADCYAP1P18509 176 aa7.07□□□□□ -1.28
CCDC88C-213ENST00000557455 CTRLP40313 264 aa7.07□□□□□ -1.28
CCDC88C-213ENST00000557455 CIRBPQ14011 172 aaKnown RBP7.07□□□□□ -1.28
CCDC88C-213ENST00000557455 PLA2G2DQ9UNK4 145 aa7.07□□□□□ -1.28
CCDC88C-213ENST00000557455 UBR4Q5T4S7 5183 aa7.06□□□□□ -1.28
CCDC88C-213ENST00000557455 IGKV3OR2-268A0A0C4DH90 116 aa7.06□□□□□ -1.28
CCDC88C-213ENST00000557455 SCO1O75880 301 aa7.06□□□□□ -1.28
CCDC88C-213ENST00000557455 SLPIP03973 132 aa7.06□□□□□ -1.28
CCDC88C-213ENST00000557455 GATD1Q8NB37 220 aa7.06□□□□□ -1.28
CCDC88C-213ENST00000557455 RNASE7Q9H1E1 156 aaKnown RBP7.06□□□□□ -1.28
CCDC88C-213ENST00000557455 RPP21Q9H633 154 aaKnown RBP7.06□□□□□ -1.28
CCDC88C-213ENST00000557455 TRAV26-2A0A0B4J265 109 aa7.05□□□□□ -1.28
CCDC88C-213ENST00000557455 GAGE12HA6NDE8 117 aa7.05□□□□□ -1.28
CCDC88C-213ENST00000557455 C9JQL5 133 aa7.05□□□□□ -1.28
CCDC88C-213ENST00000557455 AMMECR1LQ6DCA0 310 aa7.05□□□□□ -1.28
CCDC88C-213ENST00000557455 CFAP161Q6P656 301 aa7.05□□□□□ -1.28
CCDC88C-213ENST00000557455 SMIM15Q7Z3B0 74 aa7.05□□□□□ -1.28
CCDC88C-213ENST00000557455 RNF185Q96GF1 192 aa7.05□□□□□ -1.28
CCDC88C-213ENST00000557455 CNFNQ9BYD5 112 aa7.05□□□□□ -1.28
CCDC88C-213ENST00000557455 A0A087WYN8 130 aa7.04□□□□□ -1.28
CCDC88C-213ENST00000557455 NDUFS6O75380 124 aaKnown RBP7.04□□□□□ -1.28
CCDC88C-213ENST00000557455 SRP19P09132 144 aaKnown RBP7.04□□□□□ -1.28
CCDC88C-213ENST00000557455 CHTF8P0CG12 524 aa7.04□□□□□ -1.28
CCDC88C-213ENST00000557455 Q6ZRU5 148 aa7.04□□□□□ -1.28
CCDC88C-213ENST00000557455 C15orf56Q8N910 161 aa7.04□□□□□ -1.28
CCDC88C-213ENST00000557455 OCC1Q8TAD7 63 aa7.04□□□□□ -1.28
CCDC88C-213ENST00000557455 SPACA4Q8TDM5 124 aa7.04□□□□□ -1.28
CCDC88C-213ENST00000557455 K7EN84 100 aa7.03□□□□□ -1.28
CCDC88C-213ENST00000557455 NCR2O95944 276 aa7.03□□□□□ -1.28
CCDC88C-213ENST00000557455 APCSP02743 223 aa7.03□□□□□ -1.28
CCDC88C-213ENST00000557455 RPS10P46783 165 aaKnown RBP7.03□□□□□ -1.28
CCDC88C-213ENST00000557455 CEBPGP53567 150 aa7.03□□□□□ -1.28
CCDC88C-213ENST00000557455 RHEBQ15382 184 aa7.03□□□□□ -1.28
CCDC88C-213ENST00000557455 RNASEKQ6P5S7 137 aaKnown RBP7.03□□□□□ -1.28
CCDC88C-213ENST00000557455 RPL39LQ96EH5 51 aaKnown RBP7.03□□□□□ -1.28
CCDC88C-213ENST00000557455 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.02□□□□□ -1.29
CCDC88C-213ENST00000557455 IGKV2-29A2NJV5 120 aaPredicted RBP7.02□□□□□ -1.29
CCDC88C-213ENST00000557455 H7C423 109 aa7.02□□□□□ -1.29
CCDC88C-213ENST00000557455 COX6A2Q02221 97 aa7.02□□□□□ -1.29
CCDC88C-213ENST00000557455 HIGD2BQ4VC39 106 aa7.02□□□□□ -1.29
CCDC88C-213ENST00000557455 GTSF1Q8WW33 167 aa7.02□□□□□ -1.29
CCDC88C-213ENST00000557455 CHCHD10Q8WYQ3 142 aaPredicted RBP7.02□□□□□ -1.29
CCDC88C-213ENST00000557455 PLAC8Q9NZF1 115 aa7.02□□□□□ -1.29
CCDC88C-213ENST00000557455 SDHAF1A6NFY7 115 aa7.01□□□□□ -1.29
CCDC88C-213ENST00000557455 TMEM250H0YL14 139 aa7.01□□□□□ -1.29
CCDC88C-213ENST00000557455 GATCO43716 136 aaKnown RBP7.01□□□□□ -1.29
CCDC88C-213ENST00000557455 MT1HL1P0DM35 61 aa7.01□□□□□ -1.29
CCDC88C-213ENST00000557455 FGF6P10767 208 aa7.01□□□□□ -1.29
CCDC88C-213ENST00000557455 PMCHP20382 165 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms