RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 SPINK8P0C7L1 97 aa-0.24□□□□□ -2.45
SCFD1-218ENST00000556256 KRTAP6-1Q3LI64 71 aa-0.24□□□□□ -2.45
SCFD1-218ENST00000556256 S100A7L2Q5SY68 101 aa-0.24□□□□□ -2.45
SCFD1-218ENST00000556256 BAGE3Q86Y29 109 aa-0.24□□□□□ -2.45
SCFD1-218ENST00000556256 CNFNQ9BYD5 112 aa-0.24□□□□□ -2.45
SCFD1-218ENST00000556256 CASKIN1Q8WXD9 1431 aa-0.24□□□□□ -2.45
SCFD1-218ENST00000556256 ZNF518AQ6AHZ1 1483 aa-0.24□□□□□ -2.45
SCFD1-218ENST00000556256 PXDNQ92626 1479 aa-0.24□□□□□ -2.45
SCFD1-218ENST00000556256 PIEZO2Q9H5I5 2752 aa-0.24□□□□□ -2.45
SCFD1-218ENST00000556256 USF3Q68DE3 2245 aa-0.25□□□□□ -2.45
SCFD1-218ENST00000556256 CSPG4Q6UVK1 2322 aa-0.25□□□□□ -2.45
SCFD1-218ENST00000556256 BSNQ9UPA5 3926 aa-0.25□□□□□ -2.45
SCFD1-218ENST00000556256 HECTD4Q9Y4D8 3996 aa-0.25□□□□□ -2.45
SCFD1-218ENST00000556256 SIX6O95475 246 aa-0.25□□□□□ -2.45
SCFD1-218ENST00000556256 CCL18P55774 89 aa-0.25□□□□□ -2.45
SCFD1-218ENST00000556256 SMCO1Q147U7 214 aa-0.25□□□□□ -2.45
SCFD1-218ENST00000556256 CCDC167Q9P0B6 97 aa-0.25□□□□□ -2.45
SCFD1-218ENST00000556256 MYOM3Q5VTT5 1437 aa-0.25□□□□□ -2.45
SCFD1-218ENST00000556256 WNK1Q9H4A3 2382 aa-0.25□□□□□ -2.45
SCFD1-218ENST00000556256 PTPN13Q12923 2485 aa-0.26□□□□□ -2.45
SCFD1-218ENST00000556256 KMT2CQ8NEZ4 4911 aaKnown RBP-0.26□□□□□ -2.45
SCFD1-218ENST00000556256 GRIN2AQ12879 1464 aa-0.26□□□□□ -2.45
SCFD1-218ENST00000556256 A0A0D9SFI3 127 aa-0.26□□□□□ -2.45
SCFD1-218ENST00000556256 SPAARA0A1B0GVQ0 90 aa-0.26□□□□□ -2.45
SCFD1-218ENST00000556256 PFDN5Q99471 154 aa-0.26□□□□□ -2.45
SCFD1-218ENST00000556256 TENM2Q9NT68 2774 aa-0.27□□□□□ -2.45
SCFD1-218ENST00000556256 BIVM-ERCC5R4GMW8 1640 aa-0.27□□□□□ -2.45
SCFD1-218ENST00000556256 LRP1BQ9NZR2 4599 aa-0.27□□□□□ -2.45
SCFD1-218ENST00000556256 FAM92AA1XBS5 289 aa-0.27□□□□□ -2.45
SCFD1-218ENST00000556256 C10orf142B7Z368 130 aa-0.27□□□□□ -2.45
SCFD1-218ENST00000556256 HCG22E2RYF7 251 aa-0.27□□□□□ -2.45
SCFD1-218ENST00000556256 IFITM1P13164 125 aa-0.27□□□□□ -2.45
SCFD1-218ENST00000556256 CFAP126Q5VTH2 177 aa-0.27□□□□□ -2.45
SCFD1-218ENST00000556256 MYO7BQ6PIF6 2116 aa-0.27□□□□□ -2.45
SCFD1-218ENST00000556256 SEC11CQ9BY50 192 aa-0.27□□□□□ -2.45
SCFD1-218ENST00000556256 PAIP2BQ9ULR5 123 aaKnown RBP-0.27□□□□□ -2.45
SCFD1-218ENST00000556256 PLXNB2O15031 1838 aa-0.27□□□□□ -2.45
SCFD1-218ENST00000556256 IFT172Q9UG01 1749 aa-0.27□□□□□ -2.45
SCFD1-218ENST00000556256 APC2O95996 2303 aa-0.27□□□□□ -2.45
SCFD1-218ENST00000556256 GVINP1Q7Z2Y8 2422 aa-0.28□□□□□ -2.45
SCFD1-218ENST00000556256 HIST1H1DP16402 221 aaKnown RBP-0.28□□□□□ -2.45
SCFD1-218ENST00000556256 AGPAT4-IT1Q9H0P7 198 aa-0.28□□□□□ -2.45
SCFD1-218ENST00000556256 PRO0255Q9UI72 69 aa-0.28□□□□□ -2.45
SCFD1-218ENST00000556256 DOPEY1Q5JWR5 2465 aa-0.28□□□□□ -2.45
SCFD1-218ENST00000556256 BICRAQ9NZM4 1560 aa-0.28□□□□□ -2.45
SCFD1-218ENST00000556256 MYH8P13535 1937 aa-0.28□□□□□ -2.46
SCFD1-218ENST00000556256 ZNF609O15014 1411 aa-0.29□□□□□ -2.46
SCFD1-218ENST00000556256 SRRM2Q9UQ35 2752 aaKnown RBP-0.29□□□□□ -2.46
SCFD1-218ENST00000556256 SMIM6P0DI80 62 aa-0.29□□□□□ -2.46
SCFD1-218ENST00000556256 ARPC4P59998 168 aa-0.29□□□□□ -2.46
SCFD1-218ENST00000556256 Q8N8P6 123 aa-0.29□□□□□ -2.46
SCFD1-218ENST00000556256 LSM10Q969L4 123 aaKnown RBP-0.29□□□□□ -2.46
SCFD1-218ENST00000556256 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.3□□□□□ -2.46
SCFD1-218ENST00000556256 NHSL1Q5SYE7 1610 aa-0.3□□□□□ -2.46
SCFD1-218ENST00000556256 TRAV13-2A0A0B4J235 113 aa-0.3□□□□□ -2.46
SCFD1-218ENST00000556256 PPP1R17O96001 155 aa-0.3□□□□□ -2.46
SCFD1-218ENST00000556256 CFDP00746 253 aaPredicted RBP-0.3□□□□□ -2.46
SCFD1-218ENST00000556256 WFDC2Q14508 124 aa-0.3□□□□□ -2.46
SCFD1-218ENST00000556256 SCN3BQ9NY72 215 aa-0.3□□□□□ -2.46
SCFD1-218ENST00000556256 RYR3Q15413 4870 aa-0.3□□□□□ -2.46
SCFD1-218ENST00000556256 MRC1P22897 1456 aa-0.3□□□□□ -2.46
SCFD1-218ENST00000556256 LAMC1P11047 1609 aa-0.31□□□□□ -2.46
SCFD1-218ENST00000556256 M0R135 149 aa-0.31□□□□□ -2.46
SCFD1-218ENST00000556256 NDUFA2O43678 99 aa-0.31□□□□□ -2.46
SCFD1-218ENST00000556256 RBM3P98179 157 aaKnown RBP-0.31□□□□□ -2.46
SCFD1-218ENST00000556256 PDCD10Q9BUL8 212 aa-0.31□□□□□ -2.46
SCFD1-218ENST00000556256 RERGLQ9H628 205 aa-0.31□□□□□ -2.46
SCFD1-218ENST00000556256 R4GMQ9 66 aa-0.31□□□□□ -2.46
SCFD1-218ENST00000556256 SPTA1P02549 2419 aa-0.31□□□□□ -2.46
SCFD1-218ENST00000556256 CFTRP13569 1480 aa-0.31□□□□□ -2.46
SCFD1-218ENST00000556256 MAP1AP78559 2803 aaPredicted RBP-0.31□□□□□ -2.46
SCFD1-218ENST00000556256 PRKDCP78527 4128 aaKnown RBP-0.32□□□□□ -2.46
SCFD1-218ENST00000556256 ATRQ13535 2644 aa-0.32□□□□□ -2.46
SCFD1-218ENST00000556256 COL6A3P12111 3177 aa-0.32□□□□□ -2.46
SCFD1-218ENST00000556256 M0R3E3 92 aa-0.32□□□□□ -2.46
SCFD1-218ENST00000556256 PRM1P04553 51 aa-0.32□□□□□ -2.46
SCFD1-218ENST00000556256 SELENOWP63302 87 aa-0.32□□□□□ -2.46
SCFD1-218ENST00000556256 C10orf128Q5T292 105 aa-0.32□□□□□ -2.46
SCFD1-218ENST00000556256 Q5VSD8 79 aa-0.32□□□□□ -2.46
SCFD1-218ENST00000556256 C12orf73Q69YU5 71 aa-0.32□□□□□ -2.46
SCFD1-218ENST00000556256 Q6AWC8 147 aa-0.32□□□□□ -2.46
SCFD1-218ENST00000556256 AMELXQ99217 191 aa-0.32□□□□□ -2.46
SCFD1-218ENST00000556256 SNRNP25Q9BV90 132 aaKnown RBP-0.32□□□□□ -2.46
SCFD1-218ENST00000556256 LENEPQ9Y5L5 61 aa-0.32□□□□□ -2.46
SCFD1-218ENST00000556256 ACANP16112 2415 aa-0.32□□□□□ -2.46
SCFD1-218ENST00000556256 WNK3Q9BYP7 1800 aa-0.32□□□□□ -2.46
SCFD1-218ENST00000556256 BCE1O60756 84 aa-0.33□□□□□ -2.46
SCFD1-218ENST00000556256 SPRR2DP22532 72 aa-0.33□□□□□ -2.46
SCFD1-218ENST00000556256 PI4KAP42356 2102 aa-0.33□□□□□ -2.46
SCFD1-218ENST00000556256 LINC00470Q9BZP3 86 aa-0.33□□□□□ -2.46
SCFD1-218ENST00000556256 NPVFQ9HCQ7 196 aa-0.33□□□□□ -2.46
SCFD1-218ENST00000556256 SERP1Q9Y6X1 66 aa-0.33□□□□□ -2.46
SCFD1-218ENST00000556256 NWD2Q9ULI1 1742 aa-0.33□□□□□ -2.46
SCFD1-218ENST00000556256 RNF213Q63HN8 5207 aa-0.34□□□□□ -2.46
SCFD1-218ENST00000556256 GOLGA4Q13439 2230 aaKnown RBP-0.34□□□□□ -2.46
SCFD1-218ENST00000556256 TRAV22A0A0B4J277 110 aa-0.34□□□□□ -2.46
SCFD1-218ENST00000556256 PRDM2Q13029 1718 aa-0.34□□□□□ -2.46
SCFD1-218ENST00000556256 DEFB109BQ30KR1 87 aa-0.34□□□□□ -2.46
SCFD1-218ENST00000556256 Q8IZM0 81 aa-0.34□□□□□ -2.46
SCFD1-218ENST00000556256 SMIM4Q8WVI0 70 aa-0.34□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms