RNA–Protein interactions for RNA: ENST00000553709.5

ARHGEF40-202, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 5,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-202ENST00000553709 NFE4Q86UQ8 179 aa11.55□□□□□ -0.56
ARHGEF40-202ENST00000553709 SMAD5-AS1Q9Y6J3 95 aa11.55□□□□□ -0.56
ARHGEF40-202ENST00000553709 NDUFA1O15239 70 aa11.55□□□□□ -0.56
ARHGEF40-202ENST00000553709 RBM3P98179 157 aaKnown RBP11.54□□□□□ -0.56
ARHGEF40-202ENST00000553709 MIAQ16674 131 aa11.54□□□□□ -0.56
ARHGEF40-202ENST00000553709 SPANXCQ9NY87 97 aa11.54□□□□□ -0.56
ARHGEF40-202ENST00000553709 FUSP35637 526 aaKnown RBP eCLIP11.54□□□□□ -0.56
ARHGEF40-202ENST00000553709 DNAJC9-AS1A6NH13 148 aa11.54□□□□□ -0.56
ARHGEF40-202ENST00000553709 HIVEP2P31629 2446 aa11.54□□□□□ -0.56
ARHGEF40-202ENST00000553709 IGLV2-11P01706 119 aa11.53□□□□□ -0.56
ARHGEF40-202ENST00000553709 PTH2Q96A98 100 aa11.53□□□□□ -0.56
ARHGEF40-202ENST00000553709 TP73-AS1Q9UF72 201 aa11.53□□□□□ -0.56
ARHGEF40-202ENST00000553709 DEFB4AO15263 64 aa11.53□□□□□ -0.56
ARHGEF40-202ENST00000553709 PRO0255Q9UI72 69 aa11.53□□□□□ -0.56
ARHGEF40-202ENST00000553709 U3KQK5 164 aa11.53□□□□□ -0.56
ARHGEF40-202ENST00000553709 A0A0J9YXY3 114 aa11.53□□□□□ -0.56
ARHGEF40-202ENST00000553709 IGKV3D-7A0A0C4DH55 119 aa11.53□□□□□ -0.56
ARHGEF40-202ENST00000553709 NCR3O14931 201 aa11.53□□□□□ -0.56
ARHGEF40-202ENST00000553709 CCL18P55774 89 aa11.53□□□□□ -0.56
ARHGEF40-202ENST00000553709 SPAG11BQ08648 103 aa11.53□□□□□ -0.56
ARHGEF40-202ENST00000553709 C11orf71Q6IPW1 123 aa11.52□□□□□ -0.56
ARHGEF40-202ENST00000553709 LRRC75A-AS1Q8N1F1 130 aa11.52□□□□□ -0.56
ARHGEF40-202ENST00000553709 ATRXP46100 2492 aa11.52□□□□□ -0.56
ARHGEF40-202ENST00000553709 ZFAND2AQ8N6M9 145 aa11.52□□□□□ -0.57
ARHGEF40-202ENST00000553709 TCL1BO95988 128 aa11.52□□□□□ -0.57
ARHGEF40-202ENST00000553709 ADAMTS20P59510 1910 aa11.52□□□□□ -0.57
ARHGEF40-202ENST00000553709 JMJD7-PLA2G4BH0Y9G9 81 aa11.52□□□□□ -0.57
ARHGEF40-202ENST00000553709 RNF185Q96GF1 192 aa11.52□□□□□ -0.57
ARHGEF40-202ENST00000553709 FAM236AA0A1B0GUQ0 79 aa11.51□□□□□ -0.57
ARHGEF40-202ENST00000553709 FAM236BA0A1B0GV22 79 aa11.51□□□□□ -0.57
ARHGEF40-202ENST00000553709 Q6YL49 198 aa11.51□□□□□ -0.57
ARHGEF40-202ENST00000553709 Q6ZTI0 123 aa11.51□□□□□ -0.57
ARHGEF40-202ENST00000553709 TM2D2Q9BX73 214 aa11.51□□□□□ -0.57
ARHGEF40-202ENST00000553709 H3BQ85 93 aa11.51□□□□□ -0.57
ARHGEF40-202ENST00000553709 KIAA1549Q9HCM3 1950 aa11.51□□□□□ -0.57
ARHGEF40-202ENST00000553709 KLK12Q9UKR0 248 aa11.51□□□□□ -0.57
ARHGEF40-202ENST00000553709 IGF2RP11717 2491 aa11.5□□□□□ -0.57
ARHGEF40-202ENST00000553709 ATOX1O00244 68 aa11.5□□□□□ -0.57
ARHGEF40-202ENST00000553709 INSL3P51460 131 aa11.5□□□□□ -0.57
ARHGEF40-202ENST00000553709 TNRC6BQ9UPQ9 1833 aaKnown RBP11.5□□□□□ -0.57
ARHGEF40-202ENST00000553709 CPAMD8Q8IZJ3 1885 aa11.49□□□□□ -0.57
ARHGEF40-202ENST00000553709 PLXNB1O43157 2135 aa11.49□□□□□ -0.57
ARHGEF40-202ENST00000553709 NCOR2Q9Y618 2525 aa11.49□□□□□ -0.57
ARHGEF40-202ENST00000553709 J3KT08 172 aa11.49□□□□□ -0.57
ARHGEF40-202ENST00000553709 CHD9Q3L8U1 2897 aa11.49□□□□□ -0.57
ARHGEF40-202ENST00000553709 IGKV2D-26A0A0A0MRZ7 120 aa11.48□□□□□ -0.57
ARHGEF40-202ENST00000553709 A0A1B0GX51 115 aa11.48□□□□□ -0.57
ARHGEF40-202ENST00000553709 DEFB114Q30KQ6 69 aa11.48□□□□□ -0.57
ARHGEF40-202ENST00000553709 LINC00467Q9BRT7 94 aa11.48□□□□□ -0.57
ARHGEF40-202ENST00000553709 TIRAPP58753 221 aa11.48□□□□□ -0.57
ARHGEF40-202ENST00000553709 Q8N6K4 173 aa11.48□□□□□ -0.57
ARHGEF40-202ENST00000553709 PKIGQ9Y2B9 76 aa11.48□□□□□ -0.57
ARHGEF40-202ENST00000553709 IGHV4-31P0DP07 118 aa11.48□□□□□ -0.57
ARHGEF40-202ENST00000553709 ZNF22P17026 224 aaPredicted RBP11.48□□□□□ -0.57
ARHGEF40-202ENST00000553709 DSCAML1Q8TD84 2053 aa11.47□□□□□ -0.57
ARHGEF40-202ENST00000553709 IGLV4-3A0A075B6K6 122 aa11.47□□□□□ -0.57
ARHGEF40-202ENST00000553709 TMEM258P61165 79 aa11.47□□□□□ -0.57
ARHGEF40-202ENST00000553709 M0QY20 66 aa11.47□□□□□ -0.57
ARHGEF40-202ENST00000553709 TMEM223A0PJW6 202 aa11.46□□□□□ -0.57
ARHGEF40-202ENST00000553709 F8W735 103 aaPredicted RBP11.46□□□□□ -0.57
ARHGEF40-202ENST00000553709 DIRC1Q969H9 104 aa11.46□□□□□ -0.57
ARHGEF40-202ENST00000553709 RNF183Q96D59 192 aa11.46□□□□□ -0.57
ARHGEF40-202ENST00000553709 CDKN2A-AS1Q9UH64 79 aa11.46□□□□□ -0.57
ARHGEF40-202ENST00000553709 MAPKAPK5-AS1Q8N8E1 139 aa11.46□□□□□ -0.57
ARHGEF40-202ENST00000553709 PTPN13Q12923 2485 aa11.46□□□□□ -0.57
ARHGEF40-202ENST00000553709 IGHV4-28A0A0C4DH34 117 aa11.45□□□□□ -0.58
ARHGEF40-202ENST00000553709 PIEZO2Q9H5I5 2752 aa11.45□□□□□ -0.58
ARHGEF40-202ENST00000553709 NREPQ16612 68 aa11.45□□□□□ -0.58
ARHGEF40-202ENST00000553709 RBX1P62877 108 aa11.45□□□□□ -0.58
ARHGEF40-202ENST00000553709 TMEM256-PLSCR3K7ERE1 68 aa11.45□□□□□ -0.58
ARHGEF40-202ENST00000553709 PSMB8P28062 276 aa11.45□□□□□ -0.58
ARHGEF40-202ENST00000553709 HIST2H2BDQ6DRA6 164 aa11.45□□□□□ -0.58
ARHGEF40-202ENST00000553709 SPANXB1Q9NS25 103 aaPredicted RBP11.45□□□□□ -0.58
ARHGEF40-202ENST00000553709 DSCAMO60469 2012 aa11.44□□□□□ -0.58
ARHGEF40-202ENST00000553709 HCFC1P51610 2035 aa11.44□□□□□ -0.58
ARHGEF40-202ENST00000553709 SONP18583 2426 aaKnown RBP11.44□□□□□ -0.58
ARHGEF40-202ENST00000553709 CFAP126Q5VTH2 177 aa11.43□□□□□ -0.58
ARHGEF40-202ENST00000553709 C10orf99Q6UWK7 81 aa11.43□□□□□ -0.58
ARHGEF40-202ENST00000553709 TRBV27A0A0K0K1C4 114 aa11.42□□□□□ -0.58
ARHGEF40-202ENST00000553709 NRACQ8N912 160 aa11.42□□□□□ -0.58
ARHGEF40-202ENST00000553709 ZNF843Q8N446 348 aa11.42□□□□□ -0.58
ARHGEF40-202ENST00000553709 C11orf21Q9P2W6 132 aa11.42□□□□□ -0.58
ARHGEF40-202ENST00000553709 NDUFS5O43920 106 aa11.41□□□□□ -0.58
ARHGEF40-202ENST00000553709 TRBV6-5A0A0K0K1A5 114 aa11.41□□□□□ -0.58
ARHGEF40-202ENST00000553709 H7C423 109 aa11.41□□□□□ -0.58
ARHGEF40-202ENST00000553709 LINC00269Q8N2A0 174 aa11.41□□□□□ -0.58
ARHGEF40-202ENST00000553709 C14orf132Q9NPU4 83 aa11.41□□□□□ -0.58
ARHGEF40-202ENST00000553709 TANC2Q9HCD6 1990 aa11.41□□□□□ -0.58
ARHGEF40-202ENST00000553709 TLN1Q9Y490 2541 aaKnown RBP11.41□□□□□ -0.58
ARHGEF40-202ENST00000553709 LINC00643Q86TS7 51 aa11.41□□□□□ -0.58
ARHGEF40-202ENST00000553709 RNASE3P12724 160 aaKnown RBP11.4□□□□□ -0.58
ARHGEF40-202ENST00000553709 PRR9Q5T870 116 aa11.4□□□□□ -0.58
ARHGEF40-202ENST00000553709 REG3AQ06141 175 aa11.4□□□□□ -0.58
ARHGEF40-202ENST00000553709 FAM222AQ5U5X8 452 aa11.4□□□□□ -0.59
ARHGEF40-202ENST00000553709 KLK5Q9Y337 293 aaPredicted RBP11.4□□□□□ -0.59
ARHGEF40-202ENST00000553709 SMIM9A6NGZ8 99 aa11.39□□□□□ -0.59
ARHGEF40-202ENST00000553709 WFDC11Q8NEX6 87 aa11.39□□□□□ -0.59
ARHGEF40-202ENST00000553709 NAV2Q8IVL1 2488 aa11.39□□□□□ -0.59
ARHGEF40-202ENST00000553709 Q6ZSV7 163 aa11.39□□□□□ -0.59
ARHGEF40-202ENST00000553709 C2orf91Q6ZV80 131 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms