RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 RBMY1CP0DJD4 496 aa14.9□□□□□ -0.02
TMEM260-203ENST00000539559 RBMY1FQ15415 496 aaKnown RBP14.9□□□□□ -0.02
TMEM260-203ENST00000539559 ADAMTSL4-AS1Q5T5F5 129 aa14.9□□□□□ -0.02
TMEM260-203ENST00000539559 FAM104AQ969W3 186 aa14.9□□□□□ -0.02
TMEM260-203ENST00000539559 TEX49A0A1B0GTD5 131 aa14.9□□□□□ -0.02
TMEM260-203ENST00000539559 M0R2P5 195 aa14.9□□□□□ -0.02
TMEM260-203ENST00000539559 K7EMT4 169 aa14.89□□□□□ -0.03
TMEM260-203ENST00000539559 TRIAP1O43715 76 aa14.89□□□□□ -0.03
TMEM260-203ENST00000539559 SNRPD3P62318 126 aaKnown RBP14.89□□□□□ -0.03
TMEM260-203ENST00000539559 CRLF1O75462 422 aa14.89□□□□□ -0.03
TMEM260-203ENST00000539559 NACAE9PAV3 2078 aa14.89□□□□□ -0.03
TMEM260-203ENST00000539559 A0A0B4J2C4 111 aa14.89□□□□□ -0.03
TMEM260-203ENST00000539559 TIMM21Q9BVV7 248 aa14.89□□□□□ -0.03
TMEM260-203ENST00000539559 IGHV4-59P01825 116 aa14.88□□□□□ -0.03
TMEM260-203ENST00000539559 LINC01620Q4KN68 170 aa14.88□□□□□ -0.03
TMEM260-203ENST00000539559 K7EQG2 157 aa14.88□□□□□ -0.03
TMEM260-203ENST00000539559 PSMB8P28062 276 aa14.87□□□□□ -0.03
TMEM260-203ENST00000539559 ANAPC13Q9BS18 74 aa14.87□□□□□ -0.03
TMEM260-203ENST00000539559 LITAFQ99732 161 aa14.87□□□□□ -0.03
TMEM260-203ENST00000539559 TRAV4A0A0B4J268 109 aa14.86□□□□□ -0.03
TMEM260-203ENST00000539559 ZFAND6Q6FIF0 208 aa14.86□□□□□ -0.03
TMEM260-203ENST00000539559 DAND5Q8N907 189 aa14.86□□□□□ -0.03
TMEM260-203ENST00000539559 USP9YO00507 2555 aaPredicted RBP14.85□□□□□ -0.03
TMEM260-203ENST00000539559 ATXN8Q156A1 80 aa14.85□□□□□ -0.03
TMEM260-203ENST00000539559 Q6ZSN1 163 aa14.85□□□□□ -0.03
TMEM260-203ENST00000539559 TEX29Q8N6K0 151 aa14.85□□□□□ -0.03
TMEM260-203ENST00000539559 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.84□□□□□ -0.03
TMEM260-203ENST00000539559 IGHV3-38A0A0C4DH36 116 aa14.84□□□□□ -0.03
TMEM260-203ENST00000539559 IGKV2-29A2NJV5 120 aaPredicted RBP14.84□□□□□ -0.03
TMEM260-203ENST00000539559 LINC01356Q8N9X3 169 aa14.84□□□□□ -0.03
TMEM260-203ENST00000539559 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.83□□□□□ -0.03
TMEM260-203ENST00000539559 CLEC2BQ92478 149 aa14.83□□□□□ -0.03
TMEM260-203ENST00000539559 NDUFA12Q9UI09 145 aa14.83□□□□□ -0.03
TMEM260-203ENST00000539559 TMEM262E9PQX1 116 aa14.83□□□□□ -0.04
TMEM260-203ENST00000539559 CITED1Q99966 193 aa14.82□□□□□ -0.04
TMEM260-203ENST00000539559 DEFB112Q30KQ8 113 aa14.82□□□□□ -0.04
TMEM260-203ENST00000539559 ODF3Q96PU9 254 aa14.82□□□□□ -0.04
TMEM260-203ENST00000539559 HIST2H2BDQ6DRA6 164 aa14.81□□□□□ -0.04
TMEM260-203ENST00000539559 A0A096LNT2 108 aa14.81□□□□□ -0.04
TMEM260-203ENST00000539559 POLQO75417 2590 aa14.8□□□□□ -0.04
TMEM260-203ENST00000539559 KRTAP10-9P60411 292 aa14.8□□□□□ -0.04
TMEM260-203ENST00000539559 MRPS36P82909 103 aaKnown RBP14.8□□□□□ -0.04
TMEM260-203ENST00000539559 MAPK1IP1LQ8NDC0 245 aa14.8□□□□□ -0.04
TMEM260-203ENST00000539559 TNFRSF18Q9Y5U5 241 aa14.8□□□□□ -0.04
TMEM260-203ENST00000539559 SS18L2Q9UHA2 77 aa14.8□□□□□ -0.04
TMEM260-203ENST00000539559 ICOSQ9Y6W8 199 aa14.8□□□□□ -0.04
TMEM260-203ENST00000539559 ANKRD17O75179 2603 aaKnown RBP14.8□□□□□ -0.04
TMEM260-203ENST00000539559 NHLRC4P0CG21 123 aaPredicted RBP14.79□□□□□ -0.04
TMEM260-203ENST00000539559 FBN2P35556 2912 aa14.79□□□□□ -0.04
TMEM260-203ENST00000539559 IGHV1-58A0A0C4DH39 117 aa14.79□□□□□ -0.04
TMEM260-203ENST00000539559 DEFB136Q30KP8 78 aa14.79□□□□□ -0.04
TMEM260-203ENST00000539559 MXRA5Q9NR99 2828 aa14.79□□□□□ -0.04
TMEM260-203ENST00000539559 SNCGO76070 127 aa14.79□□□□□ -0.04
TMEM260-203ENST00000539559 TRGV11A0A075B6L2 103 aa14.78□□□□□ -0.04
TMEM260-203ENST00000539559 TRBV30A0A0K0K1B3 111 aa14.78□□□□□ -0.04
TMEM260-203ENST00000539559 TRBV10-2A0A0K0K1G8 114 aa14.78□□□□□ -0.04
TMEM260-203ENST00000539559 J3QLI3 93 aa14.78□□□□□ -0.04
TMEM260-203ENST00000539559 C2orf82Q6UX34 121 aa14.78□□□□□ -0.04
TMEM260-203ENST00000539559 DUX3Q96PT4 197 aa14.78□□□□□ -0.04
TMEM260-203ENST00000539559 A0A0U1RRA0 63 aa14.78□□□□□ -0.04
TMEM260-203ENST00000539559 DEFB131AP59861 70 aa14.78□□□□□ -0.04
TMEM260-203ENST00000539559 C18orf65Q6ZTR6 163 aa14.78□□□□□ -0.04
TMEM260-203ENST00000539559 H7C423 109 aa14.77□□□□□ -0.04
TMEM260-203ENST00000539559 HOXD3P31249 432 aaPredicted RBP14.77□□□□□ -0.04
TMEM260-203ENST00000539559 GAGE2BQ13066 116 aa14.77□□□□□ -0.04
TMEM260-203ENST00000539559 DEFB113Q30KQ7 82 aa14.77□□□□□ -0.04
TMEM260-203ENST00000539559 GAGE2EQ4V326 116 aa14.77□□□□□ -0.04
TMEM260-203ENST00000539559 GAGE2DQ9UEU5 116 aa14.77□□□□□ -0.04
TMEM260-203ENST00000539559 CENPEQ02224 2701 aa14.77□□□□□ -0.04
TMEM260-203ENST00000539559 TRAV8-4A0A0B4J246 113 aa14.77□□□□□ -0.05
TMEM260-203ENST00000539559 VSIG2Q96IQ7 327 aa14.77□□□□□ -0.05
TMEM260-203ENST00000539559 LINC00467Q9BRT7 94 aa14.77□□□□□ -0.05
TMEM260-203ENST00000539559 CHCHD7Q9BUK0 85 aa14.77□□□□□ -0.05
TMEM260-203ENST00000539559 B5MCH6 92 aa14.76□□□□□ -0.05
TMEM260-203ENST00000539559 PTPN13Q12923 2485 aa14.76□□□□□ -0.05
TMEM260-203ENST00000539559 RBMY1BA6NDE4 496 aaKnown RBP14.76□□□□□ -0.05
TMEM260-203ENST00000539559 RBMY1EA6NEQ0 496 aaKnown RBP14.76□□□□□ -0.05
TMEM260-203ENST00000539559 H3BMM0 161 aa14.76□□□□□ -0.05
TMEM260-203ENST00000539559 RBMY1DP0C7P1 496 aaKnown RBP14.76□□□□□ -0.05
TMEM260-203ENST00000539559 UBE2WQ96B02 151 aa14.76□□□□□ -0.05
TMEM260-203ENST00000539559 PYGO1Q9Y3Y4 419 aa14.76□□□□□ -0.05
TMEM260-203ENST00000539559 ZNF625Q96I27 306 aaPredicted RBP14.75□□□□□ -0.05
TMEM260-203ENST00000539559 LRRC75A-AS1Q8N1F1 130 aa14.75□□□□□ -0.05
TMEM260-203ENST00000539559 NOTCH3Q9UM47 2321 aa14.75□□□□□ -0.05
TMEM260-203ENST00000539559 UBE2D4Q9Y2X8 147 aa14.75□□□□□ -0.05
TMEM260-203ENST00000539559 MIAQ16674 131 aa14.74□□□□□ -0.05
TMEM260-203ENST00000539559 TTC32Q5I0X7 151 aa14.74□□□□□ -0.05
TMEM260-203ENST00000539559 C15orf53Q8NAA6 179 aa14.74□□□□□ -0.05
TMEM260-203ENST00000539559 M0QXV9 152 aa14.74□□□□□ -0.05
TMEM260-203ENST00000539559 SLURP1P55000 103 aa14.74□□□□□ -0.05
TMEM260-203ENST00000539559 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.74□□□□□ -0.05
TMEM260-203ENST00000539559 CDKN2A-AS1Q9UH64 79 aa14.74□□□□□ -0.05
TMEM260-203ENST00000539559 RPL13AP40429 203 aaKnown RBP14.73□□□□□ -0.05
TMEM260-203ENST00000539559 NDUFV3P56181 108 aaKnown RBP14.72□□□□□ -0.05
TMEM260-203ENST00000539559 SPANXDQ9BXN6 97 aa14.72□□□□□ -0.05
TMEM260-203ENST00000539559 SPANXCQ9NY87 97 aa14.72□□□□□ -0.05
TMEM260-203ENST00000539559 C2CD3Q4AC94 2353 aa14.72□□□□□ -0.05
TMEM260-203ENST00000539559 NAV2Q8IVL1 2488 aa14.71□□□□□ -0.06
TMEM260-203ENST00000539559 TINCRA0A1B0GVN0 87 aa14.7□□□□□ -0.06
TMEM260-203ENST00000539559 CCDC179H3BU77 68 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms