RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 IGHV1-58A0A0C4DH39 117 aa8.28□□□□□ -1.08
SYNE1-237ENST00000539504 ATP5J2P56134 94 aa8.28□□□□□ -1.08
SYNE1-237ENST00000539504 DUX3Q96PT4 197 aa8.28□□□□□ -1.08
SYNE1-237ENST00000539504 CHD8Q9HCK8 2581 aa8.28□□□□□ -1.08
SYNE1-237ENST00000539504 DGAT2L7PQ6IED9 249 aa8.28□□□□□ -1.08
SYNE1-237ENST00000539504 ABCA2Q9BZC7 2435 aa8.28□□□□□ -1.08
SYNE1-237ENST00000539504 RPL13AP40429 203 aaKnown RBP8.27□□□□□ -1.08
SYNE1-237ENST00000539504 K7EQG2 157 aa8.27□□□□□ -1.09
SYNE1-237ENST00000539504 NACAE9PAV3 2078 aa8.27□□□□□ -1.09
SYNE1-237ENST00000539504 GAGE12JA6NER3 117 aa8.27□□□□□ -1.09
SYNE1-237ENST00000539504 GAGE7O76087 117 aa8.27□□□□□ -1.09
SYNE1-237ENST00000539504 GAGE12FP0CL80 117 aa8.27□□□□□ -1.09
SYNE1-237ENST00000539504 GAGE12GP0CL81 117 aa8.27□□□□□ -1.09
SYNE1-237ENST00000539504 GAGE12IP0CL82 117 aa8.27□□□□□ -1.09
SYNE1-237ENST00000539504 GAGE4Q13068 117 aa8.27□□□□□ -1.09
SYNE1-237ENST00000539504 ZNF625Q96I27 306 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-237ENST00000539504 CCL19Q99731 98 aa8.27□□□□□ -1.09
SYNE1-237ENST00000539504 ODF3Q96PU9 254 aa8.26□□□□□ -1.09
SYNE1-237ENST00000539504 C2CD3Q4AC94 2353 aa8.26□□□□□ -1.09
SYNE1-237ENST00000539504 H7C423 109 aa8.26□□□□□ -1.09
SYNE1-237ENST00000539504 M0QXV9 152 aa8.26□□□□□ -1.09
SYNE1-237ENST00000539504 Q9UF83 564 aa8.26□□□□□ -1.09
SYNE1-237ENST00000539504 CCDC179H3BU77 68 aa8.26□□□□□ -1.09
SYNE1-237ENST00000539504 IGHV4-59P01825 116 aa8.26□□□□□ -1.09
SYNE1-237ENST00000539504 MRPS36P82909 103 aaKnown RBP8.26□□□□□ -1.09
SYNE1-237ENST00000539504 MIAQ16674 131 aa8.26□□□□□ -1.09
SYNE1-237ENST00000539504 IGHV4-30-2A0A087WSY4 118 aa8.25□□□□□ -1.09
SYNE1-237ENST00000539504 BRI3O95415 125 aa8.25□□□□□ -1.09
SYNE1-237ENST00000539504 MSMBP08118 114 aa8.25□□□□□ -1.09
SYNE1-237ENST00000539504 NHLRC4P0CG21 123 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-237ENST00000539504 DEFB131AP59861 70 aa8.25□□□□□ -1.09
SYNE1-237ENST00000539504 VSIG2Q96IQ7 327 aa8.25□□□□□ -1.09
SYNE1-237ENST00000539504 LITAFQ99732 161 aa8.25□□□□□ -1.09
SYNE1-237ENST00000539504 YAE1D1Q9NRH1 226 aa8.25□□□□□ -1.09
SYNE1-237ENST00000539504 PYGO1Q9Y3Y4 419 aa8.25□□□□□ -1.09
SYNE1-237ENST00000539504 PSMB8P28062 276 aa8.24□□□□□ -1.09
SYNE1-237ENST00000539504 CIRBPQ14011 172 aaKnown RBP8.24□□□□□ -1.09
SYNE1-237ENST00000539504 C10orf105Q8TEF2 133 aa8.24□□□□□ -1.09
SYNE1-237ENST00000539504 USP9YO00507 2555 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-237ENST00000539504 H3BT86 120 aa8.23□□□□□ -1.09
SYNE1-237ENST00000539504 AVPP01185 164 aa8.23□□□□□ -1.09
SYNE1-237ENST00000539504 GNLYP22749 145 aa8.23□□□□□ -1.09
SYNE1-237ENST00000539504 SPTBN4Q9H254 2564 aa8.23□□□□□ -1.09
SYNE1-237ENST00000539504 TMEM61Q8N0U2 210 aa8.23□□□□□ -1.09
SYNE1-237ENST00000539504 SVIPQ8NHG7 77 aa8.23□□□□□ -1.09
SYNE1-237ENST00000539504 SPANXDQ9BXN6 97 aa8.23□□□□□ -1.09
SYNE1-237ENST00000539504 SPANXCQ9NY87 97 aa8.23□□□□□ -1.09
SYNE1-237ENST00000539504 CDKN2A-AS1Q9UH64 79 aa8.23□□□□□ -1.09
SYNE1-237ENST00000539504 TINCRA0A1B0GVN0 87 aa8.23□□□□□ -1.09
SYNE1-237ENST00000539504 RBMY1A1P0DJD3 496 aaKnown RBP8.23□□□□□ -1.09
SYNE1-237ENST00000539504 RBMY1CP0DJD4 496 aa8.23□□□□□ -1.09
SYNE1-237ENST00000539504 RBMY1FQ15415 496 aaKnown RBP8.23□□□□□ -1.09
SYNE1-237ENST00000539504 LINC00467Q9BRT7 94 aa8.23□□□□□ -1.09
SYNE1-237ENST00000539504 ZFHX3Q15911 3703 aa8.23□□□□□ -1.09
SYNE1-237ENST00000539504 CFHR3Q02985 330 aa8.22□□□□□ -1.09
SYNE1-237ENST00000539504 DEFB112Q30KQ8 113 aa8.22□□□□□ -1.09
SYNE1-237ENST00000539504 LINC01587Q99440 93 aa8.22□□□□□ -1.09
SYNE1-237ENST00000539504 HOXD3P31249 432 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-237ENST00000539504 Q6ZSN1 163 aa8.22□□□□□ -1.09
SYNE1-237ENST00000539504 SPANXA1Q9NS26 97 aa8.22□□□□□ -1.09
SYNE1-237ENST00000539504 LST1O00453 97 aa8.21□□□□□ -1.09
SYNE1-237ENST00000539504 KHDC1LQ5JSQ8 128 aa8.21□□□□□ -1.09
SYNE1-237ENST00000539504 UBE2D4Q9Y2X8 147 aa8.21□□□□□ -1.09
SYNE1-237ENST00000539504 MEIG1Q5JSS6 88 aa8.21□□□□□ -1.1
SYNE1-237ENST00000539504 IGHV3OR16-12A0A075B7B8 117 aa8.21□□□□□ -1.1
SYNE1-237ENST00000539504 ZNF415Q09FC8 603 aa8.21□□□□□ -1.1
SYNE1-237ENST00000539504 DEFB136Q30KP8 78 aa8.21□□□□□ -1.1
SYNE1-237ENST00000539504 Q9H8V8 135 aa8.21□□□□□ -1.1
SYNE1-237ENST00000539504 FAM104AQ969W3 186 aa8.2□□□□□ -1.1
SYNE1-237ENST00000539504 CHCHD7Q9BUK0 85 aa8.2□□□□□ -1.1
SYNE1-237ENST00000539504 B4DSR2 109 aa8.2□□□□□ -1.1
SYNE1-237ENST00000539504 C3orf56Q8N813 242 aa8.2□□□□□ -1.1
SYNE1-237ENST00000539504 TRAV13-1A0A0B4J241 112 aa8.19□□□□□ -1.1
SYNE1-237ENST00000539504 Q6Q795 121 aa8.19□□□□□ -1.1
SYNE1-237ENST00000539504 MAPK1IP1LQ8NDC0 245 aa8.19□□□□□ -1.1
SYNE1-237ENST00000539504 TMEM101Q96IK0 257 aa8.19□□□□□ -1.1
SYNE1-237ENST00000539504 CHCHD5Q9BSY4 110 aa8.19□□□□□ -1.1
SYNE1-237ENST00000539504 SLURP1P55000 103 aa8.18□□□□□ -1.1
SYNE1-237ENST00000539504 SMIM20Q8N5G0 67 aa8.18□□□□□ -1.1
SYNE1-237ENST00000539504 PRIMA1Q86XR5 153 aa8.17□□□□□ -1.1
SYNE1-237ENST00000539504 MYO9AB2RTY4 2548 aa8.17□□□□□ -1.1
SYNE1-237ENST00000539504 LINC00308Q8TCZ7 52 aa8.17□□□□□ -1.1
SYNE1-237ENST00000539504 USP9XQ93008 2570 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-237ENST00000539504 COX6A2Q02221 97 aa8.17□□□□□ -1.1
SYNE1-237ENST00000539504 NDUFA1O15239 70 aa8.16□□□□□ -1.1
SYNE1-237ENST00000539504 IGHV3-53P01767 116 aa8.16□□□□□ -1.1
SYNE1-237ENST00000539504 DYNLRB2Q8TF09 96 aa8.16□□□□□ -1.1
SYNE1-237ENST00000539504 NRGNQ92686 78 aa8.16□□□□□ -1.1
SYNE1-237ENST00000539504 NDUFA7O95182 113 aa8.16□□□□□ -1.1
SYNE1-237ENST00000539504 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-237ENST00000539504 RBMY1BA6NDE4 496 aaKnown RBP8.15□□□□□ -1.1
SYNE1-237ENST00000539504 RBMY1EA6NEQ0 496 aaKnown RBP8.15□□□□□ -1.1
SYNE1-237ENST00000539504 RBMY1DP0C7P1 496 aaKnown RBP8.15□□□□□ -1.1
SYNE1-237ENST00000539504 CITED2Q99967 270 aaPredicted RBP8.15□□□□□ -1.1
SYNE1-237ENST00000539504 XCL2Q9UBD3 114 aa8.15□□□□□ -1.1
SYNE1-237ENST00000539504 TIMM17BO60830 172 aa8.15□□□□□ -1.1
SYNE1-237ENST00000539504 C18orf65Q6ZTR6 163 aa8.15□□□□□ -1.1
SYNE1-237ENST00000539504 HERVK_113P63121 156 aa8.15□□□□□ -1.11
SYNE1-237ENST00000539504 UBE2E2Q96LR5 201 aa8.15□□□□□ -1.11
SYNE1-237ENST00000539504 TRGV1A0A0A0MS02 117 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms