RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 TCTEX1D4Q5JR98 221 aa6.8□□□□□ -1.32
LIMCH1-215ENST00000512632 DUX3Q96PT4 197 aa6.8□□□□□ -1.32
LIMCH1-215ENST00000512632 PIEZO1Q92508 2521 aa6.79□□□□□ -1.32
LIMCH1-215ENST00000512632 IGHV3-38A0A0C4DH36 116 aa6.79□□□□□ -1.32
LIMCH1-215ENST00000512632 A0A0J9YXY3 114 aa6.79□□□□□ -1.32
LIMCH1-215ENST00000512632 Q6ZUT4 128 aa6.79□□□□□ -1.32
LIMCH1-215ENST00000512632 NAV2Q8IVL1 2488 aa6.79□□□□□ -1.32
LIMCH1-215ENST00000512632 TMEM263Q8WUH6 116 aaKnown RBP6.79□□□□□ -1.32
LIMCH1-215ENST00000512632 TNFRSF18Q9Y5U5 241 aa6.79□□□□□ -1.32
LIMCH1-215ENST00000512632 Q5PR19 223 aa6.79□□□□□ -1.32
LIMCH1-215ENST00000512632 C18orf65Q6ZTR6 163 aa6.79□□□□□ -1.32
LIMCH1-215ENST00000512632 CRYBA4P53673 196 aa6.78□□□□□ -1.32
LIMCH1-215ENST00000512632 ODF3Q96PU9 254 aa6.78□□□□□ -1.32
LIMCH1-215ENST00000512632 TIMM21Q9BVV7 248 aa6.78□□□□□ -1.32
LIMCH1-215ENST00000512632 Q6ZSV7 163 aa6.78□□□□□ -1.32
LIMCH1-215ENST00000512632 TRGV11A0A075B6L2 103 aa6.78□□□□□ -1.32
LIMCH1-215ENST00000512632 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.78□□□□□ -1.32
LIMCH1-215ENST00000512632 IGKV2-29A2NJV5 120 aaPredicted RBP6.78□□□□□ -1.32
LIMCH1-215ENST00000512632 Q6ZSN1 163 aa6.78□□□□□ -1.32
LIMCH1-215ENST00000512632 GEMIN7Q9H840 131 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-215ENST00000512632 ANKRD17O75179 2603 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-215ENST00000512632 SLURP1P55000 103 aa6.78□□□□□ -1.32
LIMCH1-215ENST00000512632 NTN5Q8WTR8 489 aaPredicted RBP6.77□□□□□ -1.33
LIMCH1-215ENST00000512632 ADAMTSL4-AS1Q5T5F5 129 aa6.77□□□□□ -1.33
LIMCH1-215ENST00000512632 MXRA5Q9NR99 2828 aa6.77□□□□□ -1.33
LIMCH1-215ENST00000512632 SBSPONQ8IVN8 264 aa6.77□□□□□ -1.33
LIMCH1-215ENST00000512632 PRORYQ9H606 182 aa6.77□□□□□ -1.33
LIMCH1-215ENST00000512632 KHDC1LQ5JSQ8 128 aa6.77□□□□□ -1.33
LIMCH1-215ENST00000512632 FAM104AQ969W3 186 aa6.77□□□□□ -1.33
LIMCH1-215ENST00000512632 NDUFA12Q9UI09 145 aa6.77□□□□□ -1.33
LIMCH1-215ENST00000512632 TRAV26-1A0A087WT03 109 aa6.76□□□□□ -1.33
LIMCH1-215ENST00000512632 M0R2P5 195 aa6.76□□□□□ -1.33
LIMCH1-215ENST00000512632 DAND5Q8N907 189 aa6.76□□□□□ -1.33
LIMCH1-215ENST00000512632 CCDC168Q8NDH2 2452 aa6.76□□□□□ -1.33
LIMCH1-215ENST00000512632 EPG5Q9HCE0 2579 aa6.76□□□□□ -1.33
LIMCH1-215ENST00000512632 A0A0U1RRA0 63 aa6.76□□□□□ -1.33
LIMCH1-215ENST00000512632 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-215ENST00000512632 RBMY1BA6NDE4 496 aaKnown RBP6.76□□□□□ -1.33
LIMCH1-215ENST00000512632 RBMY1EA6NEQ0 496 aaKnown RBP6.76□□□□□ -1.33
LIMCH1-215ENST00000512632 RBMY1DP0C7P1 496 aaKnown RBP6.76□□□□□ -1.33
LIMCH1-215ENST00000512632 A0A0B4J2C4 111 aa6.75□□□□□ -1.33
LIMCH1-215ENST00000512632 TRIAP1O43715 76 aa6.75□□□□□ -1.33
LIMCH1-215ENST00000512632 LINC01620Q4KN68 170 aa6.75□□□□□ -1.33
LIMCH1-215ENST00000512632 JMJD1CQ15652 2540 aa6.75□□□□□ -1.33
LIMCH1-215ENST00000512632 LINC01587Q99440 93 aa6.75□□□□□ -1.33
LIMCH1-215ENST00000512632 H3BMM0 161 aa6.74□□□□□ -1.33
LIMCH1-215ENST00000512632 MRPS36P82909 103 aaKnown RBP6.74□□□□□ -1.33
LIMCH1-215ENST00000512632 TMEM61Q8N0U2 210 aa6.74□□□□□ -1.33
LIMCH1-215ENST00000512632 CLUHP3Q96NS8 147 aa6.74□□□□□ -1.33
LIMCH1-215ENST00000512632 IGHV3OR16-12A0A075B7B8 117 aa6.74□□□□□ -1.33
LIMCH1-215ENST00000512632 IGHV1-58A0A0C4DH39 117 aa6.74□□□□□ -1.33
LIMCH1-215ENST00000512632 ZNF625Q96I27 306 aaPredicted RBP6.74□□□□□ -1.33
LIMCH1-215ENST00000512632 LITAFQ99732 161 aa6.74□□□□□ -1.33
LIMCH1-215ENST00000512632 TEX49A0A1B0GTD5 131 aa6.74□□□□□ -1.33
LIMCH1-215ENST00000512632 LINC01356Q8N9X3 169 aa6.74□□□□□ -1.33
LIMCH1-215ENST00000512632 LINC00467Q9BRT7 94 aa6.74□□□□□ -1.33
LIMCH1-215ENST00000512632 ATXN8Q156A1 80 aa6.74□□□□□ -1.33
LIMCH1-215ENST00000512632 IGSF10Q6WRI0 2623 aa6.73□□□□□ -1.33
LIMCH1-215ENST00000512632 UBE2E2Q96LR5 201 aa6.73□□□□□ -1.33
LIMCH1-215ENST00000512632 PYGO1Q9Y3Y4 419 aa6.73□□□□□ -1.33
LIMCH1-215ENST00000512632 TEX15Q9BXT5 2789 aa6.73□□□□□ -1.33
LIMCH1-215ENST00000512632 DGAT2L7PQ6IED9 249 aa6.73□□□□□ -1.33
LIMCH1-215ENST00000512632 CDKN2A-AS1Q9UH64 79 aa6.73□□□□□ -1.33
LIMCH1-215ENST00000512632 ZNF462Q96JM2 2506 aa6.73□□□□□ -1.33
LIMCH1-215ENST00000512632 VSIG2Q96IQ7 327 aa6.73□□□□□ -1.33
LIMCH1-215ENST00000512632 CHCHD7Q9BUK0 85 aa6.73□□□□□ -1.33
LIMCH1-215ENST00000512632 VPREB3Q9UKI3 123 aa6.73□□□□□ -1.33
LIMCH1-215ENST00000512632 CLEC2BQ92478 149 aa6.73□□□□□ -1.33
LIMCH1-215ENST00000512632 RNF183Q96D59 192 aa6.73□□□□□ -1.33
LIMCH1-215ENST00000512632 ZNF702PQ9H963 129 aa6.73□□□□□ -1.33
LIMCH1-215ENST00000512632 UBE2D4Q9Y2X8 147 aa6.72□□□□□ -1.33
LIMCH1-215ENST00000512632 FBN2P35556 2912 aa6.72□□□□□ -1.33
LIMCH1-215ENST00000512632 TMEM262E9PQX1 116 aa6.72□□□□□ -1.33
LIMCH1-215ENST00000512632 GATA3P23771 443 aa6.72□□□□□ -1.33
LIMCH1-215ENST00000512632 XCL2Q9UBD3 114 aa6.72□□□□□ -1.33
LIMCH1-215ENST00000512632 TMEM89A2RUT3 159 aa6.72□□□□□ -1.33
LIMCH1-215ENST00000512632 ZNF415Q09FC8 603 aa6.72□□□□□ -1.33
LIMCH1-215ENST00000512632 C2orf82Q6UX34 121 aa6.72□□□□□ -1.33
LIMCH1-215ENST00000512632 CHD6Q8TD26 2715 aa6.72□□□□□ -1.33
LIMCH1-215ENST00000512632 TEX29Q8N6K0 151 aa6.71□□□□□ -1.33
LIMCH1-215ENST00000512632 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.71□□□□□ -1.33
LIMCH1-215ENST00000512632 C11orf44Q8N8P7 122 aa6.71□□□□□ -1.33
LIMCH1-215ENST00000512632 ICOSQ9Y6W8 199 aa6.71□□□□□ -1.33
LIMCH1-215ENST00000512632 CRLF1O75462 422 aa6.71□□□□□ -1.34
LIMCH1-215ENST00000512632 TRBV30A0A0K0K1B3 111 aa6.71□□□□□ -1.34
LIMCH1-215ENST00000512632 NDUFA7O95182 113 aa6.71□□□□□ -1.34
LIMCH1-215ENST00000512632 ZFAND6Q6FIF0 208 aa6.71□□□□□ -1.34
LIMCH1-215ENST00000512632 TRAV4A0A0B4J268 109 aa6.7□□□□□ -1.34
LIMCH1-215ENST00000512632 IGHV3-53P01767 116 aa6.7□□□□□ -1.34
LIMCH1-215ENST00000512632 DYNLRB2Q8TF09 96 aa6.7□□□□□ -1.34
LIMCH1-215ENST00000512632 TRBV10-2A0A0K0K1G8 114 aa6.7□□□□□ -1.34
LIMCH1-215ENST00000512632 TINCRA0A1B0GVN0 87 aa6.7□□□□□ -1.34
LIMCH1-215ENST00000512632 MIAQ16674 131 aa6.7□□□□□ -1.34
LIMCH1-215ENST00000512632 COX6CP09669 75 aa6.7□□□□□ -1.34
LIMCH1-215ENST00000512632 ANAPC13Q9BS18 74 aa6.7□□□□□ -1.34
LIMCH1-215ENST00000512632 SPANXA1Q9NS26 97 aa6.7□□□□□ -1.34
LIMCH1-215ENST00000512632 COX6A2Q02221 97 aa6.7□□□□□ -1.34
LIMCH1-215ENST00000512632 RPL13AP40429 203 aaKnown RBP6.69□□□□□ -1.34
LIMCH1-215ENST00000512632 MAP6D1Q9H9H5 199 aa6.69□□□□□ -1.34
LIMCH1-215ENST00000512632 TRAV13-1A0A0B4J241 112 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms