RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 GZMBP10144 247 aa7.86□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 HNRNPA3P51991 378 aaKnown RBP7.86□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 SSTP61278 116 aa7.86□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 GAGE6Q13070 117 aa7.86□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 CIRBPQ14011 172 aaKnown RBP7.86□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 SERTAD4-AS1Q5TG53 156 aa7.86□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 C20orf203Q8NBC4 194 aa7.86□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 NUDT10Q8NFP7 164 aa7.86□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 NUDT11Q96G61 164 aa7.86□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 TPPP3Q9BW30 176 aa7.86□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 RPP21Q9H633 154 aaKnown RBP7.86□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.86□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 IGHV1-24A0A0C4DH33 117 aa7.85□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 K7EN84 100 aa7.85□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 HLA-DQA1P01909 254 aa7.85□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 SRP19P09132 144 aaKnown RBP7.85□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 CNBPP62633 177 aaKnown RBP7.85□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 SUMO4Q6EEV6 95 aa7.85□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 WDR73Q6P4I2 378 aa7.85□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 FAM231DQ6ZW35 169 aa7.85□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 CLRN3Q8NCR9 226 aa7.85□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 A8MWL6 223 aa7.84□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 SLPIP03973 132 aa7.84□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 REG3AQ06141 175 aa7.84□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 PGLYRP4Q96LB8 373 aa7.84□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 GFRA4Q9GZZ7 299 aa7.84□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 RNASE7Q9H1E1 156 aaKnown RBP7.84□□□□□ -1.15
MSH5-SAPCD1-205ENST00000476085 IGLV4-60A0A075B6I1 120 aa7.83□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 TRAV8-4A0A0B4J246 113 aa7.83□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 H7C1H1 209 aa7.83□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 GATCO43716 136 aaKnown RBP7.83□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 TRGC1P0CF51 173 aa7.83□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 RPL37AP61513 92 aaKnown RBP7.83□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 TMEM241Q24JQ0 296 aa7.83□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 CT83Q5H943 113 aa7.83□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 RASL11AQ6T310 242 aa7.83□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 CLPSL2Q6UWE3 100 aa7.83□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 LYZL1Q6UWQ5 148 aa7.83□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 LINC01551Q86U37 167 aa7.83□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 CNFNQ9BYD5 112 aa7.83□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 HMCN2Q8NDA2 5059 aa7.82□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 NTF3P20783 257 aa7.82□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 CTRLP40313 264 aa7.82□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 NIT2Q9NQR4 276 aa7.82□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 IGLV10-54A0A075B6I4 117 aa7.81□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 MGPP08493 103 aa7.81□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 SMIM15Q7Z3B0 74 aa7.81□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 BORCS7Q96B45 105 aa7.81□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 TMEM243Q9BU79 118 aa7.81□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 OSTCQ9NRP0 149 aa7.81□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 NAT8Q9UHE5 227 aa7.81□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 FAM231BA6NCW3 169 aa7.8□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 MT1HL1P0DM35 61 aa7.8□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 TWIST1Q15672 202 aa7.8□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 DPH3P1Q9H4G8 78 aa7.8□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 FOXA3P55318 350 aaPredicted RBP7.79□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 hDV102S1A0JD36 115 aa7.78□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 C9JQL5 133 aa7.78□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 RPL23P62829 140 aaKnown RBP7.78□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 SRSF3P84103 164 aaKnown RBP7.78□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 ADIRFQ15847 76 aa7.78□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 CLLU1Q5K131 121 aa7.78□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 GATD1Q8NB37 220 aa7.78□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 TSKUQ8WUA8 353 aa7.78□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 GTSF1Q8WW33 167 aa7.78□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 ISOC2Q96AB3 205 aa7.78□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 RNF185Q96GF1 192 aa7.78□□□□□ -1.16
MSH5-SAPCD1-205ENST00000476085 Q6ZRU5 148 aa7.77□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 C15orf56Q8N910 161 aa7.77□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 SPACA4Q8TDM5 124 aa7.77□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 IGHV3-64A0A075B6Q5 118 aa7.76□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 A0A087WYN8 130 aa7.76□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 A0A1B0GUT8 65 aa7.76□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 HIGD1CA8MV81 97 aa7.76□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 COTL1Q14019 142 aa7.76□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 PLAC8Q9NZF1 115 aa7.76□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 AMTP48728 403 aa7.75□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 NAT8BQ9UHF3 227 aa7.75□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 V9GYV3 84 aa7.75□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.74□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 TRAV26-2A0A0B4J265 109 aa7.74□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 H7C423 109 aa7.74□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 CHTF8P0CG12 524 aa7.74□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 PNRC1Q12796 327 aaPredicted RBP7.74□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 RIGQ13278 110 aa7.74□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 AP5S1Q9NUS5 200 aa7.74□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 PLA2G2DQ9UNK4 145 aa7.74□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 GAGE12HA6NDE8 117 aa7.73□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 UBE2L6O14933 153 aa7.73□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 PPP1R2P9O14990 202 aa7.73□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 NCR2O95944 276 aa7.73□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 UQCC3Q6UW78 93 aa7.73□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 RPL39LQ96EH5 51 aaKnown RBP7.73□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 TNXBP22105 4242 aa7.73□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 A0A1B0GW15 77 aa7.72□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 SMIM27A0A1W2PRY6 76 aa7.72□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 RPS10P46783 165 aaKnown RBP7.72□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 IFITM2Q01629 132 aa7.72□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 CFAP161Q6P656 301 aa7.72□□□□□ -1.17
MSH5-SAPCD1-205ENST00000476085 NUP35Q8NFH5 326 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms