RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 EXPH5Q8NEV8 1989 aa6.03□□□□□ -1.44
SYNE1-210ENST00000409694 K7EIM0 57 aa6.03□□□□□ -1.44
SYNE1-210ENST00000409694 TRBV30A0A0K0K1B3 111 aa6.03□□□□□ -1.44
SYNE1-210ENST00000409694 VPREB1P12018 145 aa6.03□□□□□ -1.44
SYNE1-210ENST00000409694 RNF144BQ7Z419 303 aa6.03□□□□□ -1.44
SYNE1-210ENST00000409694 IGKV1D-37A0A075B6S9 117 aa6.03□□□□□ -1.44
SYNE1-210ENST00000409694 RNASE8Q8TDE3 154 aaKnown RBP6.03□□□□□ -1.44
SYNE1-210ENST00000409694 TRBV27A0A0K0K1C4 114 aa6.02□□□□□ -1.45
SYNE1-210ENST00000409694 IGKV2-24A0A0C4DH68 120 aa6.02□□□□□ -1.45
SYNE1-210ENST00000409694 CTSGP08311 255 aa6.02□□□□□ -1.45
SYNE1-210ENST00000409694 Q6ZVQ6 151 aa6.02□□□□□ -1.45
SYNE1-210ENST00000409694 A0A1B0GXF2 115 aa6.02□□□□□ -1.45
SYNE1-210ENST00000409694 LINC00269Q8N2A0 174 aa6.02□□□□□ -1.45
SYNE1-210ENST00000409694 LINC01548A6NM66 108 aa6.02□□□□□ -1.45
SYNE1-210ENST00000409694 PMAIP1Q13794 54 aa6.02□□□□□ -1.45
SYNE1-210ENST00000409694 WFDC10AQ9H1F0 79 aa6.02□□□□□ -1.45
SYNE1-210ENST00000409694 TMEM223A0PJW6 202 aa6.02□□□□□ -1.45
SYNE1-210ENST00000409694 WT1P19544 449 aaPredicted RBP6.02□□□□□ -1.45
SYNE1-210ENST00000409694 SMIM26A0A096LP01 95 aa6.02□□□□□ -1.45
SYNE1-210ENST00000409694 MT-ATP8P03928 68 aa6.01□□□□□ -1.45
SYNE1-210ENST00000409694 CHCHD10Q8WYQ3 142 aaPredicted RBP6.01□□□□□ -1.45
SYNE1-210ENST00000409694 LINC00322Q6ZN03 302 aaPredicted RBP6.01□□□□□ -1.45
SYNE1-210ENST00000409694 COX7CP15954 63 aa6.01□□□□□ -1.45
SYNE1-210ENST00000409694 IGLV3-1P01715 115 aa6.01□□□□□ -1.45
SYNE1-210ENST00000409694 DIAPH2-AS1Q14236 149 aa6.01□□□□□ -1.45
SYNE1-210ENST00000409694 C10orf25Q5T742 122 aa6.01□□□□□ -1.45
SYNE1-210ENST00000409694 C1orf147Q96MC9 270 aaPredicted RBP6.01□□□□□ -1.45
SYNE1-210ENST00000409694 CCDC140Q96MF4 163 aa6.01□□□□□ -1.45
SYNE1-210ENST00000409694 LRCOL1A6NCL2 159 aa6.01□□□□□ -1.45
SYNE1-210ENST00000409694 NRACQ8N912 160 aa6.01□□□□□ -1.45
SYNE1-210ENST00000409694 THSD7BQ9C0I4 1608 aa6□□□□□ -1.45
SYNE1-210ENST00000409694 CDPF1Q6NVV7 123 aa6□□□□□ -1.45
SYNE1-210ENST00000409694 C1orf158Q8N1D5 194 aa6□□□□□ -1.45
SYNE1-210ENST00000409694 A0A0J9YX75 114 aa6□□□□□ -1.45
SYNE1-210ENST00000409694 COL4A5P29400 1685 aa6□□□□□ -1.45
SYNE1-210ENST00000409694 MUC4Q99102 2169 aa5.99□□□□□ -1.45
SYNE1-210ENST00000409694 RAI1Q7Z5J4 1906 aaPredicted RBP5.99□□□□□ -1.45
SYNE1-210ENST00000409694 MIFP14174 115 aa5.99□□□□□ -1.45
SYNE1-210ENST00000409694 NBASA2RRP1 2371 aa5.99□□□□□ -1.45
SYNE1-210ENST00000409694 PTPRSQ13332 1948 aa5.99□□□□□ -1.45
SYNE1-210ENST00000409694 C3orf84H3BNL1 204 aa5.99□□□□□ -1.45
SYNE1-210ENST00000409694 PRR14LQ5THK1 2151 aa5.99□□□□□ -1.45
SYNE1-210ENST00000409694 NEXN-AS1Q8NBZ9 246 aa5.99□□□□□ -1.45
SYNE1-210ENST00000409694 LINC00308Q8TCZ7 52 aa5.99□□□□□ -1.45
SYNE1-210ENST00000409694 SNURFQ9Y675 71 aa5.99□□□□□ -1.45
SYNE1-210ENST00000409694 M0R378 163 aa5.99□□□□□ -1.45
SYNE1-210ENST00000409694 LINC00173Q6ZV60 143 aa5.99□□□□□ -1.45
SYNE1-210ENST00000409694 A0A0J9YWU9 116 aa5.98□□□□□ -1.45
SYNE1-210ENST00000409694 MAP6D1Q9H9H5 199 aa5.98□□□□□ -1.45
SYNE1-210ENST00000409694 C19orf71A6NCJ1 209 aa5.98□□□□□ -1.45
SYNE1-210ENST00000409694 FAM19A5Q7Z5A7 132 aaPredicted RBP5.98□□□□□ -1.45
SYNE1-210ENST00000409694 CSDC2Q9Y534 153 aaKnown RBP5.98□□□□□ -1.45
SYNE1-210ENST00000409694 FAM167A-AS1Q96KT0 104 aa5.98□□□□□ -1.45
SYNE1-210ENST00000409694 IGHV4-38-2P0DP08 117 aa5.98□□□□□ -1.45
SYNE1-210ENST00000409694 SIRPDQ9H106 197 aa5.98□□□□□ -1.45
SYNE1-210ENST00000409694 LOC107984640A0A0U1RRK4 108 aa5.98□□□□□ -1.45
SYNE1-210ENST00000409694 CPAMD8Q8IZJ3 1885 aa5.98□□□□□ -1.45
SYNE1-210ENST00000409694 TRIAP1O43715 76 aa5.97□□□□□ -1.45
SYNE1-210ENST00000409694 SCXQ7RTU7 201 aa5.97□□□□□ -1.45
SYNE1-210ENST00000409694 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.97□□□□□ -1.45
SYNE1-210ENST00000409694 MSRB1Q9NZV6 116 aa5.97□□□□□ -1.45
SYNE1-210ENST00000409694 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.97□□□□□ -1.45
SYNE1-210ENST00000409694 TRAV7A0A075B6U4 112 aa5.97□□□□□ -1.45
SYNE1-210ENST00000409694 Q6JHZ5 121 aa5.97□□□□□ -1.45
SYNE1-210ENST00000409694 TDRG1Q3Y452 100 aa5.97□□□□□ -1.45
SYNE1-210ENST00000409694 ESM1Q9NQ30 184 aa5.97□□□□□ -1.45
SYNE1-210ENST00000409694 CTSZQ9UBR2 303 aa5.97□□□□□ -1.45
SYNE1-210ENST00000409694 IGHV4-30-2A0A087WSY4 118 aa5.97□□□□□ -1.45
SYNE1-210ENST00000409694 LRP4O75096 1905 aa5.97□□□□□ -1.45
SYNE1-210ENST00000409694 PRR4Q16378 134 aa5.96□□□□□ -1.45
SYNE1-210ENST00000409694 TRBV7-6A0A0J9YX20 115 aa5.96□□□□□ -1.46
SYNE1-210ENST00000409694 FAM215AQ9Y5M1 114 aa5.96□□□□□ -1.46
SYNE1-210ENST00000409694 TRBV6-5A0A0K0K1A5 114 aa5.96□□□□□ -1.46
SYNE1-210ENST00000409694 Q6Q795 121 aa5.96□□□□□ -1.46
SYNE1-210ENST00000409694 LINC00467Q9BRT7 94 aa5.96□□□□□ -1.46
SYNE1-210ENST00000409694 KRTAP27-1Q3LI81 207 aa5.96□□□□□ -1.46
SYNE1-210ENST00000409694 COL4A1P02462 1669 aa5.95□□□□□ -1.46
SYNE1-210ENST00000409694 SYCNQ0VAF6 134 aa5.95□□□□□ -1.46
SYNE1-210ENST00000409694 SORL1Q92673 2214 aa5.95□□□□□ -1.46
SYNE1-210ENST00000409694 CREBBPQ92793 2442 aa5.95□□□□□ -1.46
SYNE1-210ENST00000409694 DEFB131BA0A096LNP1 70 aa5.95□□□□□ -1.46
SYNE1-210ENST00000409694 WFDC13Q8IUB5 93 aa5.95□□□□□ -1.46
SYNE1-210ENST00000409694 SLX1AQ9BQ83 275 aa5.95□□□□□ -1.46
SYNE1-210ENST00000409694 TP73-AS1Q9UF72 201 aa5.95□□□□□ -1.46
SYNE1-210ENST00000409694 LY6LH3BQJ8 138 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 FAM30AQ9NZY2 134 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 TRBV6-8A0A0A6YYG3 113 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 LY6G6EA0A0G2JKS1 128 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 IGF2-ASQ6U949 168 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 ZFAND3Q9H8U3 227 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 IGLV4-69A0A075B6H9 119 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 TRBV6-4A0A1B0GX49 114 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 SPINK6Q6UWN8 80 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 CD164L2Q6UWJ8 174 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 YPEL4Q96NS1 127 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 ZNF503-AS2A6NEH8 195 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 ESRGQ1W209 222 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 PYGO1Q9Y3Y4 419 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 NOTCH4Q99466 2003 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 PCNX3Q9H6A9 2034 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms