RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 DEFB113Q30KQ7 82 aa2.78□□□□□ -1.96
RTN4-209ENST00000405240 UBR5O95071 2799 aaPredicted RBP2.78□□□□□ -1.96
RTN4-209ENST00000405240 MED13LQ71F56 2210 aa2.78□□□□□ -1.96
RTN4-209ENST00000405240 IGKV3-20P01619 116 aa2.78□□□□□ -1.97
RTN4-209ENST00000405240 KRTAP10-9P60411 292 aa2.78□□□□□ -1.97
RTN4-209ENST00000405240 DEFB121Q5J5C9 76 aa2.78□□□□□ -1.97
RTN4-209ENST00000405240 ADAMTSL4-AS1Q5T5F5 129 aa2.78□□□□□ -1.97
RTN4-209ENST00000405240 PPDPFLQ8WWR9 84 aa2.78□□□□□ -1.97
RTN4-209ENST00000405240 DUX5Q96PT3 197 aa2.78□□□□□ -1.97
RTN4-209ENST00000405240 ANK3Q12955 4377 aaKnown RBP2.77□□□□□ -1.97
RTN4-209ENST00000405240 TPRP12270 2363 aaKnown RBP2.77□□□□□ -1.97
RTN4-209ENST00000405240 APOMO95445 188 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 RPL13AP40429 203 aaKnown RBP2.77□□□□□ -1.97
RTN4-209ENST00000405240 PSMB2P49721 201 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 MIAQ16674 131 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 C1orf158Q8N1D5 194 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 FAM110AQ9BQ89 295 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 NDUFA1O15239 70 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 SCGB2A2Q13296 93 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 ODF3L2Q3SX64 289 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.77□□□□□ -1.97
RTN4-209ENST00000405240 C16orf95Q9H693 158 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 TNFRSF18Q9Y5U5 241 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 CFAP46Q8IYW2 2715 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 PLAC8L1A1L4L8 177 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 INSP01308 110 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 PRM2P04554 102 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 GIG44P09565 113 aaPredicted RBP2.77□□□□□ -1.97
RTN4-209ENST00000405240 LINC00694P0DN24 101 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 DEFB136Q30KP8 78 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 DOPEY1Q5JWR5 2465 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 DEFB104AQ8WTQ1 72 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 RAX2Q96IS3 184 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 BBC3Q96PG8 261 aaPredicted RBP2.77□□□□□ -1.97
RTN4-209ENST00000405240 DUX3Q96PT4 197 aa2.77□□□□□ -1.97
RTN4-209ENST00000405240 COL6A6A6NMZ7 2263 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 IFITM1P13164 125 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 CEMP1Q6PRD7 247 aaPredicted RBP2.76□□□□□ -1.97
RTN4-209ENST00000405240 Q6ZSV7 163 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 ZNF843Q8N446 348 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 GTSF1LQ9H1H1 148 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 CACNA1AO00555 2505 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 SPTA1P02549 2419 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 IGHV3OR16-12A0A075B7B8 117 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 TRBV10-1A0A0K0K1A3 114 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 F5H768 121 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 Q6ZUT4 128 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 MAPK1IP1LQ8NDC0 245 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 C19orf73Q9NVV2 129 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 ERG28Q9UKR5 140 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 TRAV8-3A0A0A6YYJ7 113 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 COX6A2Q02221 97 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 KRTAP1-1Q07627 177 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 DAZ2Q13117 558 aaKnown RBP2.76□□□□□ -1.97
RTN4-209ENST00000405240 NTM-AS1Q6ZSK4 140 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 MTURNQ8N3F0 131 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 ANKRD29Q8N6D5 301 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 TMEM101Q96IK0 257 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 CITED1Q99966 193 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 IGSF10Q6WRI0 2623 aa2.76□□□□□ -1.97
RTN4-209ENST00000405240 CUBNO60494 3623 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 NBPF19A0A087WUL8 3843 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 TRAV4A0A0B4J268 109 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 H7C423 109 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 TRIAP1O43715 76 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 CIDEAO60543 219 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 LINC00242Q5T6M2 205 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 CSNK1G2-AS1Q8NCQ2 148 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 ZNF625Q96I27 306 aaPredicted RBP2.75□□□□□ -1.97
RTN4-209ENST00000405240 CITED2Q99967 270 aaPredicted RBP2.75□□□□□ -1.97
RTN4-209ENST00000405240 OVOL2Q9BRP0 275 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 UTP20O75691 2785 aaKnown RBP2.75□□□□□ -1.97
RTN4-209ENST00000405240 IGHV3-73A0A0B4J1V6 119 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 LOC107984156A0A0G2JMH3 177 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 TRBV10-2A0A0K0K1G8 114 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 ATXN8Q156A1 80 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 DAZ4Q86SG3 579 aaKnown RBP2.75□□□□□ -1.97
RTN4-209ENST00000405240 ARL17AQ8IVW1 177 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 DAZ3Q9NR90 486 aaKnown RBP2.75□□□□□ -1.97
RTN4-209ENST00000405240 NDUFA12Q9UI09 145 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 MXRA5Q9NR99 2828 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.75□□□□□ -1.97
RTN4-209ENST00000405240 IGKV2-29A2NJV5 120 aaPredicted RBP2.75□□□□□ -1.97
RTN4-209ENST00000405240 SLC25A20O43772 301 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 LINC01620Q4KN68 170 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 TEX29Q8N6K0 151 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 LINC01587Q99440 93 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 YAE1D1Q9NRH1 226 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 ICOSQ9Y6W8 199 aa2.75□□□□□ -1.97
RTN4-209ENST00000405240 SMIM1B2RUZ4 78 aa2.74□□□□□ -1.97
RTN4-209ENST00000405240 XGP55808 180 aa2.74□□□□□ -1.97
RTN4-209ENST00000405240 CMC4P56277 68 aaPredicted RBP2.74□□□□□ -1.97
RTN4-209ENST00000405240 HERVK_113P63121 156 aa2.74□□□□□ -1.97
RTN4-209ENST00000405240 SHISA2Q6UWI4 295 aa2.74□□□□□ -1.97
RTN4-209ENST00000405240 ZNF418Q8TF45 676 aaPredicted RBP2.74□□□□□ -1.97
RTN4-209ENST00000405240 Q96MF0 132 aa2.74□□□□□ -1.97
RTN4-209ENST00000405240 ESM1Q9NQ30 184 aa2.74□□□□□ -1.97
RTN4-209ENST00000405240 CDC42SE2Q9NRR3 84 aa2.74□□□□□ -1.97
RTN4-209ENST00000405240 CDKN2A-AS1Q9UH64 79 aa2.74□□□□□ -1.97
RTN4-209ENST00000405240 PKD1L2Q7Z442 2459 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms