RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 KRTAP10-1P60331 282 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 MPV17LQ2QL34 196 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 Q6ZQT0 140 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 LINC00269Q8N2A0 174 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 TMEM141Q96I45 108 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 PRO0461Q9UI25 63 aa2.48□□□□□ -2.01
HMGB1-204ENST00000399489 NCOR2Q9Y618 2525 aa2.47□□□□□ -2.01
HMGB1-204ENST00000399489 SPTBN4Q9H254 2564 aa2.47□□□□□ -2.01
HMGB1-204ENST00000399489 TPRP12270 2363 aaKnown RBP2.47□□□□□ -2.01
HMGB1-204ENST00000399489 A6NIN4 97 aa2.47□□□□□ -2.01
HMGB1-204ENST00000399489 IGLV1-51P01701 117 aa2.47□□□□□ -2.01
HMGB1-204ENST00000399489 MDKP21741 143 aaPredicted RBP2.47□□□□□ -2.01
HMGB1-204ENST00000399489 ELOBQ15370 118 aa2.47□□□□□ -2.01
HMGB1-204ENST00000399489 FAM27BQ5VT28 67 aa2.47□□□□□ -2.01
HMGB1-204ENST00000399489 RPL7L1Q6DKI1 246 aaKnown RBP2.47□□□□□ -2.01
HMGB1-204ENST00000399489 TMEM136Q6ZRR5 245 aa2.47□□□□□ -2.01
HMGB1-204ENST00000399489 NDUFA12Q9UI09 145 aa2.47□□□□□ -2.01
HMGB1-204ENST00000399489 TRANK1O15050 2925 aa2.47□□□□□ -2.01
HMGB1-204ENST00000399489 GVINP1Q7Z2Y8 2422 aa2.47□□□□□ -2.01
HMGB1-204ENST00000399489 RIF1Q5UIP0 2472 aaKnown RBP2.47□□□□□ -2.01
HMGB1-204ENST00000399489 ZFHX2Q9C0A1 2572 aaPredicted RBP2.47□□□□□ -2.01
HMGB1-204ENST00000399489 CCDC88CQ9P219 2028 aa2.47□□□□□ -2.01
HMGB1-204ENST00000399489 PLXNB2O15031 1838 aa2.46□□□□□ -2.02
HMGB1-204ENST00000399489 MYH1P12882 1939 aa2.46□□□□□ -2.02
HMGB1-204ENST00000399489 IGHV1-18A0A0C4DH31 117 aa2.46□□□□□ -2.02
HMGB1-204ENST00000399489 UMAD1C9J7I0 102 aa2.46□□□□□ -2.02
HMGB1-204ENST00000399489 CRPP02741 224 aa2.46□□□□□ -2.02
HMGB1-204ENST00000399489 SNRPFP62306 86 aaKnown RBP2.46□□□□□ -2.02
HMGB1-204ENST00000399489 LINC00483Q53H64 154 aa2.46□□□□□ -2.02
HMGB1-204ENST00000399489 Q6ZS52 159 aa2.46□□□□□ -2.02
HMGB1-204ENST00000399489 LINC00474Q9P2X8 69 aa2.46□□□□□ -2.02
HMGB1-204ENST00000399489 PRRC2BQ5JSZ5 2229 aaKnown RBP2.46□□□□□ -2.02
HMGB1-204ENST00000399489 ARID1AO14497 2285 aa2.46□□□□□ -2.02
HMGB1-204ENST00000399489 ATRXP46100 2492 aa2.46□□□□□ -2.02
HMGB1-204ENST00000399489 BAHCC1Q9P281 2608 aa2.46□□□□□ -2.02
HMGB1-204ENST00000399489 KMT2BQ9UMN6 2715 aaPredicted RBP2.46□□□□□ -2.02
HMGB1-204ENST00000399489 DMXL1Q9Y485 3027 aa2.46□□□□□ -2.02
HMGB1-204ENST00000399489 MGAMO43451 1857 aa2.46□□□□□ -2.02
HMGB1-204ENST00000399489 BRWD1Q9NSI6 2320 aa2.46□□□□□ -2.02
HMGB1-204ENST00000399489 SMG1Q96Q15 3661 aaKnown RBP2.45□□□□□ -2.02
HMGB1-204ENST00000399489 IGKV1D-17A0A075B6S4 117 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 TRAV3A0A0B4J244 114 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 B4DSR2 109 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 SMIM13P0DJ93 91 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 ROMO1P60602 79 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 UBE2G1P62253 170 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 FAM19A2Q8N3H0 131 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 CMTM2Q8TAZ6 248 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 MYO5AQ9Y4I1 1855 aaKnown RBP2.45□□□□□ -2.02
HMGB1-204ENST00000399489 TANC2Q9HCD6 1990 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 SCN8AQ9UQD0 1980 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 ACACBO00763 2458 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 MYO9BQ13459 2157 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 PLXNA4Q9HCM2 1894 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 ASAH2BP0C7U1 165 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 NNATQ16517 81 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 C1orf134Q5TEV5 83 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 CFAP126Q5VTH2 177 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 CYP2G1PQ6ZSU1 146 aa2.45□□□□□ -2.02
HMGB1-204ENST00000399489 FAM186AA6NE01 2351 aa2.44□□□□□ -2.02
HMGB1-204ENST00000399489 ZFC3H1O60293 1989 aaKnown RBP2.44□□□□□ -2.02
HMGB1-204ENST00000399489 PTPRBP23467 1997 aa2.44□□□□□ -2.02
HMGB1-204ENST00000399489 DOCK1Q14185 1865 aa2.44□□□□□ -2.02
HMGB1-204ENST00000399489 CHD6Q8TD26 2715 aa2.44□□□□□ -2.02
HMGB1-204ENST00000399489 F2Z2F3 143 aa2.44□□□□□ -2.02
HMGB1-204ENST00000399489 ACYP1P07311 99 aa2.44□□□□□ -2.02
HMGB1-204ENST00000399489 CXCL8P10145 99 aa2.44□□□□□ -2.02
HMGB1-204ENST00000399489 MGST1P10620 155 aaKnown RBP2.44□□□□□ -2.02
HMGB1-204ENST00000399489 IL9P15248 144 aa2.44□□□□□ -2.02
HMGB1-204ENST00000399489 SMIM11AP58511 58 aa2.44□□□□□ -2.02
HMGB1-204ENST00000399489 CASC2Q6XLA1 102 aa2.44□□□□□ -2.02
HMGB1-204ENST00000399489 ODF3Q96PU9 254 aa2.44□□□□□ -2.02
HMGB1-204ENST00000399489 C14orf132Q9NPU4 83 aa2.44□□□□□ -2.02
HMGB1-204ENST00000399489 HIGD1BQ9P298 99 aa2.44□□□□□ -2.02
HMGB1-204ENST00000399489 WDFY3Q8IZQ1 3526 aa2.44□□□□□ -2.02
HMGB1-204ENST00000399489 DLG5Q8TDM6 1919 aa2.44□□□□□ -2.02
HMGB1-204ENST00000399489 LRRC37A2A6NM11 1700 aa2.44□□□□□ -2.02
HMGB1-204ENST00000399489 TECTAO75443 2155 aa2.44□□□□□ -2.02
HMGB1-204ENST00000399489 SPEGQ15772 3267 aa2.43□□□□□ -2.02
HMGB1-204ENST00000399489 MYO18AQ92614 2054 aaKnown RBP2.43□□□□□ -2.02
HMGB1-204ENST00000399489 MYO10Q9HD67 2058 aa2.43□□□□□ -2.02
HMGB1-204ENST00000399489 FASNP49327 2511 aaKnown RBP2.43□□□□□ -2.02
HMGB1-204ENST00000399489 PTPRFP10586 1907 aa2.43□□□□□ -2.02
HMGB1-204ENST00000399489 TCHHQ07283 1943 aa2.43□□□□□ -2.02
HMGB1-204ENST00000399489 TCRBV4S1A1TA0A5B7 111 aa2.43□□□□□ -2.02
HMGB1-204ENST00000399489 C5orf67F2Z3F1 127 aa2.43□□□□□ -2.02
HMGB1-204ENST00000399489 IGFBP7Q16270 282 aa2.43□□□□□ -2.02
HMGB1-204ENST00000399489 SLC48A1Q6P1K1 146 aa2.43□□□□□ -2.02
HMGB1-204ENST00000399489 SPINT4Q6UDR6 99 aa2.43□□□□□ -2.02
HMGB1-204ENST00000399489 SPTSSBQ8NFR3 76 aa2.43□□□□□ -2.02
HMGB1-204ENST00000399489 SCRT1Q9BWW7 348 aa2.43□□□□□ -2.02
HMGB1-204ENST00000399489 R4GN34 69 aa2.43□□□□□ -2.02
HMGB1-204ENST00000399489 LOC285556D6RIA3 1793 aa2.43□□□□□ -2.02
HMGB1-204ENST00000399489 PRRC2AP48634 2157 aaKnown RBP2.43□□□□□ -2.02
HMGB1-204ENST00000399489 TRPM6Q9BX84 2022 aa2.43□□□□□ -2.02
HMGB1-204ENST00000399489 HEATR5AQ86XA9 2040 aa2.42□□□□□ -2.02
HMGB1-204ENST00000399489 IGHV3-64A0A075B6Q5 118 aa2.42□□□□□ -2.02
HMGB1-204ENST00000399489 TRAV13-2A0A0B4J235 113 aa2.42□□□□□ -2.02
HMGB1-204ENST00000399489 LINC01600Q96MT4 127 aa2.42□□□□□ -2.02
HMGB1-204ENST00000399489 CYSTM1Q9H1C7 97 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms