RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 DEFB4AO15263 64 aa10.65□□□□□ -0.71
COL4A3-202ENST00000396578 GRNP28799 593 aaKnown RBP10.65□□□□□ -0.71
COL4A3-202ENST00000396578 TMEM89A2RUT3 159 aa10.64□□□□□ -0.71
COL4A3-202ENST00000396578 CEMP1Q6PRD7 247 aaPredicted RBP10.64□□□□□ -0.71
COL4A3-202ENST00000396578 SIRPDQ9H106 197 aa10.64□□□□□ -0.71
COL4A3-202ENST00000396578 IGLV2-14P01704 120 aa10.63□□□□□ -0.71
COL4A3-202ENST00000396578 H7C423 109 aa10.63□□□□□ -0.71
COL4A3-202ENST00000396578 LINC00269Q8N2A0 174 aa10.63□□□□□ -0.71
COL4A3-202ENST00000396578 A0A0J9YX75 114 aa10.63□□□□□ -0.71
COL4A3-202ENST00000396578 A0A1B0GXF2 115 aa10.63□□□□□ -0.71
COL4A3-202ENST00000396578 RAI1Q7Z5J4 1906 aaPredicted RBP10.62□□□□□ -0.71
COL4A3-202ENST00000396578 A6NED7 52 aa10.62□□□□□ -0.71
COL4A3-202ENST00000396578 WFDC11Q8NEX6 87 aa10.62□□□□□ -0.71
COL4A3-202ENST00000396578 C10orf105Q8TEF2 133 aa10.62□□□□□ -0.71
COL4A3-202ENST00000396578 FRMD6-AS1P0C7T7 363 aa10.62□□□□□ -0.71
COL4A3-202ENST00000396578 P0DMU3 169 aa10.62□□□□□ -0.71
COL4A3-202ENST00000396578 FAM231AP0DMU4 169 aa10.62□□□□□ -0.71
COL4A3-202ENST00000396578 FAM231CP0DMU5 169 aa10.62□□□□□ -0.71
COL4A3-202ENST00000396578 PLA2G2CQ5R387 149 aa10.62□□□□□ -0.71
COL4A3-202ENST00000396578 SCXQ7RTU7 201 aa10.62□□□□□ -0.71
COL4A3-202ENST00000396578 HIGD2AQ9BW72 106 aa10.62□□□□□ -0.71
COL4A3-202ENST00000396578 TECTAO75443 2155 aa10.62□□□□□ -0.71
COL4A3-202ENST00000396578 ODF3L1Q8IXM7 274 aa10.62□□□□□ -0.71
COL4A3-202ENST00000396578 E7EUB6 86 aa10.62□□□□□ -0.71
COL4A3-202ENST00000396578 REG3AQ06141 175 aa10.62□□□□□ -0.71
COL4A3-202ENST00000396578 Q6ZSR3 168 aa10.61□□□□□ -0.71
COL4A3-202ENST00000396578 NDUFA7O95182 113 aa10.61□□□□□ -0.71
COL4A3-202ENST00000396578 DEFB1P60022 68 aa10.61□□□□□ -0.71
COL4A3-202ENST00000396578 IGKV2-24A0A0C4DH68 120 aa10.6□□□□□ -0.71
COL4A3-202ENST00000396578 NEXN-AS1Q8NBZ9 246 aa10.6□□□□□ -0.71
COL4A3-202ENST00000396578 MYCNOSP40205 109 aa10.6□□□□□ -0.71
COL4A3-202ENST00000396578 LINC00467Q9BRT7 94 aa10.6□□□□□ -0.71
COL4A3-202ENST00000396578 PTPRBP23467 1997 aa10.6□□□□□ -0.71
COL4A3-202ENST00000396578 TMEM223A0PJW6 202 aa10.59□□□□□ -0.71
COL4A3-202ENST00000396578 UNQ9165/PRO28630Q6UXU0 137 aa10.59□□□□□ -0.71
COL4A3-202ENST00000396578 SPRY4Q9C004 299 aa10.59□□□□□ -0.71
COL4A3-202ENST00000396578 IMUPQ9GZP8 106 aa10.59□□□□□ -0.71
COL4A3-202ENST00000396578 SMAD5-AS1Q9Y6J3 95 aa10.59□□□□□ -0.71
COL4A3-202ENST00000396578 TRIAP1O43715 76 aa10.59□□□□□ -0.71
COL4A3-202ENST00000396578 WT1P19544 449 aaPredicted RBP10.59□□□□□ -0.71
COL4A3-202ENST00000396578 ODF3Q96PU9 254 aa10.59□□□□□ -0.71
COL4A3-202ENST00000396578 LOXL1Q08397 574 aaPredicted RBP10.59□□□□□ -0.71
COL4A3-202ENST00000396578 INSL3P51460 131 aa10.59□□□□□ -0.71
COL4A3-202ENST00000396578 MAP6D1Q9H9H5 199 aa10.59□□□□□ -0.71
COL4A3-202ENST00000396578 TRBV30A0A0K0K1B3 111 aa10.59□□□□□ -0.71
COL4A3-202ENST00000396578 SLPIP03973 132 aa10.59□□□□□ -0.71
COL4A3-202ENST00000396578 SONP18583 2426 aaKnown RBP10.58□□□□□ -0.72
COL4A3-202ENST00000396578 CPAMD8Q8IZJ3 1885 aa10.58□□□□□ -0.72
COL4A3-202ENST00000396578 IBA57-AS1B1ANH7 110 aa10.58□□□□□ -0.72
COL4A3-202ENST00000396578 SERP2Q8N6R1 65 aa10.58□□□□□ -0.72
COL4A3-202ENST00000396578 GPR179Q6PRD1 2367 aa10.58□□□□□ -0.72
COL4A3-202ENST00000396578 LINC00308Q8TCZ7 52 aa10.57□□□□□ -0.72
COL4A3-202ENST00000396578 CHCHD10Q8WYQ3 142 aaPredicted RBP10.57□□□□□ -0.72
COL4A3-202ENST00000396578 IGLV1-47P01700 117 aa10.56□□□□□ -0.72
COL4A3-202ENST00000396578 FAM19A3Q7Z5A8 133 aa10.56□□□□□ -0.72
COL4A3-202ENST00000396578 FAM19A1Q7Z5A9 133 aa10.56□□□□□ -0.72
COL4A3-202ENST00000396578 PIP4P1Q86T03 277 aa10.56□□□□□ -0.72
COL4A3-202ENST00000396578 TP53TG3Q9ULZ0 132 aa10.56□□□□□ -0.72
COL4A3-202ENST00000396578 SNURFQ9Y675 71 aa10.56□□□□□ -0.72
COL4A3-202ENST00000396578 C11orf45Q8TAV5 145 aa10.56□□□□□ -0.72
COL4A3-202ENST00000396578 CCKP06307 115 aa10.56□□□□□ -0.72
COL4A3-202ENST00000396578 IGKV1D-37A0A075B6S9 117 aa10.55□□□□□ -0.72
COL4A3-202ENST00000396578 A0A0J9YWU9 116 aa10.55□□□□□ -0.72
COL4A3-202ENST00000396578 CRYGDP07320 174 aa10.55□□□□□ -0.72
COL4A3-202ENST00000396578 ZNF80P51504 273 aaPredicted RBP10.55□□□□□ -0.72
COL4A3-202ENST00000396578 IGFL2Q6UWQ7 119 aa10.55□□□□□ -0.72
COL4A3-202ENST00000396578 C1orf158Q8N1D5 194 aa10.55□□□□□ -0.72
COL4A3-202ENST00000396578 Q8N7P7 452 aa10.55□□□□□ -0.72
COL4A3-202ENST00000396578 A0A087WZ39 114 aa10.55□□□□□ -0.72
COL4A3-202ENST00000396578 C3orf84H3BNL1 204 aa10.55□□□□□ -0.72
COL4A3-202ENST00000396578 ZFP36P26651 326 aaKnown RBP10.55□□□□□ -0.72
COL4A3-202ENST00000396578 SERP1Q9Y6X1 66 aa10.55□□□□□ -0.72
COL4A3-202ENST00000396578 PTPRSQ13332 1948 aa10.55□□□□□ -0.72
COL4A3-202ENST00000396578 GDF5OSQ5U4N7 250 aa10.55□□□□□ -0.72
COL4A3-202ENST00000396578 CDKN2A-AS1Q9UH64 79 aa10.55□□□□□ -0.72
COL4A3-202ENST00000396578 A0A096LNI7 61 aa10.54□□□□□ -0.72
COL4A3-202ENST00000396578 IL17DQ8TAD2 202 aa10.54□□□□□ -0.72
COL4A3-202ENST00000396578 HIVEP2P31629 2446 aa10.54□□□□□ -0.72
COL4A3-202ENST00000396578 IGLV4-3A0A075B6K6 122 aa10.54□□□□□ -0.72
COL4A3-202ENST00000396578 TIMM17BO60830 172 aa10.54□□□□□ -0.72
COL4A3-202ENST00000396578 LINC00322Q6ZN03 302 aaPredicted RBP10.53□□□□□ -0.72
COL4A3-202ENST00000396578 LYRM9A8MSI8 78 aa10.53□□□□□ -0.72
COL4A3-202ENST00000396578 C11orf1Q9H5F2 150 aa10.53□□□□□ -0.72
COL4A3-202ENST00000396578 Q6ZTI0 123 aa10.52□□□□□ -0.72
COL4A3-202ENST00000396578 SMIM9A6NGZ8 99 aa10.52□□□□□ -0.73
COL4A3-202ENST00000396578 IGLV2-8P01709 118 aa10.52□□□□□ -0.73
COL4A3-202ENST00000396578 LRCOL1A6NCL2 159 aa10.51□□□□□ -0.73
COL4A3-202ENST00000396578 ZNF22P17026 224 aaPredicted RBP10.51□□□□□ -0.73
COL4A3-202ENST00000396578 C1orf195Q5TG92 126 aa10.51□□□□□ -0.73
COL4A3-202ENST00000396578 MRPS12O15235 138 aaKnown RBP10.51□□□□□ -0.73
COL4A3-202ENST00000396578 CCDC140Q96MF4 163 aa10.5□□□□□ -0.73
COL4A3-202ENST00000396578 NAV3Q8IVL0 2385 aa10.5□□□□□ -0.73
COL4A3-202ENST00000396578 ANKHD1Q8IWZ3 2542 aaKnown RBP10.5□□□□□ -0.73
COL4A3-202ENST00000396578 COX7CP15954 63 aa10.5□□□□□ -0.73
COL4A3-202ENST00000396578 C9orf85Q96MD7 179 aa10.5□□□□□ -0.73
COL4A3-202ENST00000396578 C20orf173Q96LM9 149 aa10.49□□□□□ -0.73
COL4A3-202ENST00000396578 U3KQK5 164 aa10.49□□□□□ -0.73
COL4A3-202ENST00000396578 TRBV6-5A0A0K0K1A5 114 aa10.49□□□□□ -0.73
COL4A3-202ENST00000396578 MAPKAPK5-AS1Q8N8E1 139 aa10.49□□□□□ -0.73
COL4A3-202ENST00000396578 FAM19A5Q7Z5A7 132 aaPredicted RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 109.7 ms