RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CCDC179H3BU77 68 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 J3QR89 54 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 NPC2P61916 151 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 EMX2Q04743 252 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 LINC01545Q5VT33 79 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 TSTD1Q8NFU3 115 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 MAFIPQ8WZ33 124 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 PRO3102Q9H379 93 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 ERG28Q9UKR5 140 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 KIAA0586Q9BVV6 1533 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 TNCP24821 2201 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 HSPG2P98160 4391 aa0.21□□□□□ -2.38
VPS13A-206ENST00000376646 LAMA1P25391 3075 aa0.21□□□□□ -2.38
VPS13A-206ENST00000376646 NDUFA11Q86Y39 141 aa0.21□□□□□ -2.38
VPS13A-206ENST00000376646 COPZ2Q9P299 210 aa0.21□□□□□ -2.38
VPS13A-206ENST00000376646 NDUFA12Q9UI09 145 aa0.21□□□□□ -2.38
VPS13A-206ENST00000376646 DCHS2Q6V1P9 2916 aa0.21□□□□□ -2.38
VPS13A-206ENST00000376646 LRP2P98164 4655 aa0.21□□□□□ -2.38
VPS13A-206ENST00000376646 TNS1Q9HBL0 1735 aaKnown RBP0.21□□□□□ -2.38
VPS13A-206ENST00000376646 PRG4Q92954 1404 aaPredicted RBP0.21□□□□□ -2.38
VPS13A-206ENST00000376646 F5P12259 2224 aa0.21□□□□□ -2.38
VPS13A-206ENST00000376646 TRAV12-3A0A0B4J271 114 aa0.21□□□□□ -2.38
VPS13A-206ENST00000376646 F2Z2F3 143 aa0.21□□□□□ -2.38
VPS13A-206ENST00000376646 K7ERU9 68 aa0.21□□□□□ -2.38
VPS13A-206ENST00000376646 TSPAN19P0C672 248 aa0.21□□□□□ -2.38
VPS13A-206ENST00000376646 SMIM21Q3B7S5 101 aa0.21□□□□□ -2.38
VPS13A-206ENST00000376646 VSTM2AQ8TAG5 236 aa0.21□□□□□ -2.38
VPS13A-206ENST00000376646 ANP32BQ92688 251 aaKnown RBP0.21□□□□□ -2.38
VPS13A-206ENST00000376646 EFCAB6Q5THR3 1501 aa0.21□□□□□ -2.38
VPS13A-206ENST00000376646 FHAD1B1AJZ9 1412 aa0.21□□□□□ -2.38
VPS13A-206ENST00000376646 ALMS1Q8TCU4 4167 aa0.21□□□□□ -2.38
VPS13A-206ENST00000376646 MYH6P13533 1939 aa0.2□□□□□ -2.38
VPS13A-206ENST00000376646 CCL3L1P16619 93 aa0.2□□□□□ -2.38
VPS13A-206ENST00000376646 C20orf197Q8N268 126 aa0.2□□□□□ -2.38
VPS13A-206ENST00000376646 SAR1AQ9NR31 198 aa0.2□□□□□ -2.38
VPS13A-206ENST00000376646 MAGI2Q86UL8 1455 aa0.2□□□□□ -2.38
VPS13A-206ENST00000376646 PLXNA1Q9UIW2 1896 aa0.2□□□□□ -2.38
VPS13A-206ENST00000376646 MUC22E2RYF6 1773 aaPredicted RBP0.2□□□□□ -2.38
VPS13A-206ENST00000376646 A0A087WTM6 91 aa0.2□□□□□ -2.38
VPS13A-206ENST00000376646 RBAKDNA6NC62 111 aa0.2□□□□□ -2.38
VPS13A-206ENST00000376646 PITX3O75364 302 aa0.2□□□□□ -2.38
VPS13A-206ENST00000376646 PIRTP0C851 137 aa0.2□□□□□ -2.38
VPS13A-206ENST00000376646 SPCS2Q15005 226 aa0.2□□□□□ -2.38
VPS13A-206ENST00000376646 SPINK6Q6UWN8 80 aa0.2□□□□□ -2.38
VPS13A-206ENST00000376646 Q6ZUT4 128 aa0.2□□□□□ -2.38
VPS13A-206ENST00000376646 C4orf33Q8N1A6 199 aa0.2□□□□□ -2.38
VPS13A-206ENST00000376646 PROK2Q9HC23 129 aa0.2□□□□□ -2.38
VPS13A-206ENST00000376646 HRNRQ86YZ3 2850 aaPredicted RBP0.19□□□□□ -2.38
VPS13A-206ENST00000376646 COL4A6Q14031 1691 aa0.19□□□□□ -2.38
VPS13A-206ENST00000376646 MCRIP1C9JLW8 97 aa0.19□□□□□ -2.38
VPS13A-206ENST00000376646 NPFFO15130 113 aa0.19□□□□□ -2.38
VPS13A-206ENST00000376646 NCR2O95944 276 aa0.19□□□□□ -2.38
VPS13A-206ENST00000376646 COX4I1P13073 169 aa0.19□□□□□ -2.38
VPS13A-206ENST00000376646 SPRR2DP22532 72 aa0.19□□□□□ -2.38
VPS13A-206ENST00000376646 SLC48A1Q6P1K1 146 aa0.19□□□□□ -2.38
VPS13A-206ENST00000376646 VMO1Q7Z5L0 202 aa0.19□□□□□ -2.38
VPS13A-206ENST00000376646 COX7B2Q8TF08 81 aa0.19□□□□□ -2.38
VPS13A-206ENST00000376646 PSMG3Q9BT73 122 aaPredicted RBP0.19□□□□□ -2.38
VPS13A-206ENST00000376646 PRR15LQ9BU68 103 aa0.19□□□□□ -2.38
VPS13A-206ENST00000376646 BPESC1Q9GZL8 116 aa0.19□□□□□ -2.38
VPS13A-206ENST00000376646 TPT1P8Q9HAU6 139 aa0.19□□□□□ -2.38
VPS13A-206ENST00000376646 UNC80Q8N2C7 3258 aa0.19□□□□□ -2.38
VPS13A-206ENST00000376646 PHIPQ8WWQ0 1821 aa0.19□□□□□ -2.38
VPS13A-206ENST00000376646 NRXN2Q9P2S2 1712 aa0.19□□□□□ -2.38
VPS13A-206ENST00000376646 KIAA0100Q14667 2235 aaKnown RBP0.19□□□□□ -2.38
VPS13A-206ENST00000376646 TACC2O95359 2948 aa0.19□□□□□ -2.38
VPS13A-206ENST00000376646 HTTP42858 3142 aa0.19□□□□□ -2.38
VPS13A-206ENST00000376646 SPRR2EP22531 72 aa0.18□□□□□ -2.38
VPS13A-206ENST00000376646 SPRR2BP35325 72 aa0.18□□□□□ -2.38
VPS13A-206ENST00000376646 SPRR2AP35326 72 aa0.18□□□□□ -2.38
VPS13A-206ENST00000376646 MT4P47944 62 aa0.18□□□□□ -2.38
VPS13A-206ENST00000376646 SSBP1Q04837 148 aaKnown RBP0.18□□□□□ -2.38
VPS13A-206ENST00000376646 SMCO1Q147U7 214 aa0.18□□□□□ -2.38
VPS13A-206ENST00000376646 SPANXN1Q5VSR9 72 aa0.18□□□□□ -2.38
VPS13A-206ENST00000376646 C10orf82Q8WW14 230 aa0.18□□□□□ -2.38
VPS13A-206ENST00000376646 LRP1Q07954 4544 aaKnown RBP0.18□□□□□ -2.38
VPS13A-206ENST00000376646 MAPKBP1O60336 1514 aa0.18□□□□□ -2.38
VPS13A-206ENST00000376646 SSC5DA1L4H1 1573 aa0.18□□□□□ -2.38
VPS13A-206ENST00000376646 ADGRB1O14514 1584 aa0.18□□□□□ -2.38
VPS13A-206ENST00000376646 USP34Q70CQ2 3546 aa0.18□□□□□ -2.38
VPS13A-206ENST00000376646 C5orf42Q9H799 3197 aa0.18□□□□□ -2.38
VPS13A-206ENST00000376646 DMXL2Q8TDJ6 3036 aa0.18□□□□□ -2.38
VPS13A-206ENST00000376646 FAM74A4Q5TZK3 123 aa0.18□□□□□ -2.38
VPS13A-206ENST00000376646 CDK13Q14004 1512 aaKnown RBP0.18□□□□□ -2.38
VPS13A-206ENST00000376646 SYNE1Q8NF91 8797 aaKnown RBP0.18□□□□□ -2.38
VPS13A-206ENST00000376646 SOGA1O94964 1423 aa0.18□□□□□ -2.38
VPS13A-206ENST00000376646 ANK2Q01484 3957 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 GVQW2A0A096LPI5 108 aaPredicted RBP0.17□□□□□ -2.38
VPS13A-206ENST00000376646 IL5P05113 134 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 ASIPP42127 132 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 COPZ1P61923 177 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 RRAS2P62070 204 aaPredicted RBP0.17□□□□□ -2.38
VPS13A-206ENST00000376646 RPS25P62851 125 aaKnown RBP0.17□□□□□ -2.38
VPS13A-206ENST00000376646 C9orf116Q5BN46 136 aaPredicted RBP0.17□□□□□ -2.38
VPS13A-206ENST00000376646 RPL7L1Q6DKI1 246 aaKnown RBP0.17□□□□□ -2.38
VPS13A-206ENST00000376646 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 TMEM242Q9NWH2 141 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 V9GYV3 84 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 DMXL1Q9Y485 3027 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 CENPEQ02224 2701 aa0.17□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms